Wall clock time and date at job start Tue Mar 31 2020 08:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.47337 * 2 1 4 4 C 1.33011 * 119.99517 * 95.00071 * 3 2 1 5 5 C 1.47068 * 119.99361 * 172.69682 * 4 3 2 6 6 O 1.21624 * 120.00516 * 354.49614 * 5 4 3 7 7 N 1.34787 * 119.99713 * 174.50159 * 5 4 3 8 8 C 1.46495 * 119.99969 * 5.04850 * 7 5 4 9 9 C 1.50706 * 109.46993 * 269.99931 * 8 7 5 10 10 H 1.07998 * 120.00067 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99889 * 180.02562 * 9 8 7 12 12 N 1.31512 * 120.00112 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99541 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47477 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.46991 * 120.00134 * 13 11 9 16 16 H 1.48501 * 109.46478 * 239.99733 * 13 11 9 17 17 C 1.39935 * 119.99829 * 185.04484 * 7 5 4 18 18 C 1.38873 * 120.05001 * 246.37995 * 17 7 5 19 19 C 1.38111 * 119.95135 * 179.78934 * 18 17 7 20 20 C 1.38475 * 120.04911 * 0.49431 * 19 18 17 21 21 F 1.35097 * 119.95585 * 179.71647 * 20 19 18 22 22 C 1.38479 * 120.09394 * 359.73750 * 20 19 18 23 23 C 1.38114 * 120.04717 * 0.02646 * 22 20 19 24 24 C 1.50701 * 120.00022 * 275.00146 * 3 2 1 25 25 C 1.52995 * 109.47078 * 271.41041 * 24 3 2 26 26 H 1.08997 * 109.46769 * 299.99909 * 1 2 3 27 27 H 1.08995 * 109.47096 * 59.99464 * 1 2 3 28 28 H 1.08989 * 109.47235 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46700 * 239.99896 * 2 1 3 30 30 H 1.08995 * 109.47096 * 120.00536 * 2 1 3 31 31 H 1.07995 * 120.00809 * 352.69560 * 4 3 2 32 32 H 1.09000 * 109.47236 * 29.99825 * 8 7 5 33 33 H 1.09000 * 109.47602 * 150.00523 * 8 7 5 34 34 H 0.97004 * 119.99745 * 180.02562 * 12 11 9 35 35 H 1.07994 * 120.02508 * 0.02755 * 18 17 7 36 36 H 1.08004 * 119.97638 * 180.22859 * 19 18 17 37 37 H 1.08004 * 119.97758 * 180.02562 * 22 20 19 38 38 H 1.08001 * 120.02081 * 179.97438 * 23 22 20 39 39 H 1.09007 * 109.46896 * 31.41308 * 24 3 2 40 40 H 1.09002 * 109.46541 * 151.40808 * 24 3 2 41 41 H 1.09000 * 109.46925 * 179.97438 * 25 24 3 42 42 H 1.09000 * 109.47144 * 300.00020 * 25 24 3 43 43 H 1.08994 * 109.46999 * 60.00384 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.3488 2.0142 1.1476 5 6 2.9886 3.3384 1.1386 6 8 3.3195 3.8469 0.0844 7 7 3.2084 3.9885 2.2987 8 6 2.9123 3.3314 3.5740 9 6 1.4884 3.6245 3.9714 10 1 0.8662 4.2384 3.3371 11 6 0.9801 3.1088 5.1448 12 7 1.7376 2.3608 5.9169 13 14 -0.7851 3.4715 5.6369 14 1 -1.4204 4.3297 4.6048 15 1 -1.5382 2.1971 5.7537 16 1 -0.7996 4.1766 6.9437 17 6 3.7195 5.2911 2.2847 18 6 4.9876 5.5460 2.7902 19 6 5.4918 6.8317 2.7715 20 6 4.7298 7.8679 2.2585 21 9 5.2226 9.1257 2.2464 22 6 3.4631 7.6168 1.7583 23 6 2.9570 6.3318 1.7707 24 6 2.1764 2.1691 -1.3001 25 6 3.5677 1.9150 -1.8835 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 2.1359 1.5238 2.0859 32 1 3.0456 2.2549 3.4677 33 1 3.5884 3.7072 4.3420 34 1 1.3798 1.9977 6.7422 35 1 5.5806 4.7389 3.1942 36 1 6.4794 7.0297 3.1611 37 1 2.8706 8.4263 1.3583 38 1 1.9689 6.1365 1.3809 39 1 1.4187 1.8240 -2.0038 40 1 2.0467 3.2365 -1.1212 41 1 3.6716 2.4559 -2.8241 42 1 4.3253 2.2601 -1.1799 43 1 3.6972 0.8477 -2.0624 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759196491.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:10 Heat of formation + Delta-G solvation = -56.940411 kcal Electronic energy + Delta-G solvation = -25203.895643 eV Core-core repulsion = 21549.272637 eV Total energy + Delta-G solvation = -3654.623006 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.88093 -41.52071 -39.62253 -37.48638 -36.54799 -34.57395 -32.73472 -32.17389 -31.56064 -30.19748 -28.80918 -25.78293 -25.07113 -24.14409 -23.95243 -23.48904 -21.08022 -18.95329 -18.77805 -18.60256 -18.30903 -17.52243 -17.27374 -16.56133 -16.39220 -15.94075 -15.69800 -15.47978 -15.24321 -14.77368 -14.55689 -14.43972 -14.30980 -14.18534 -13.86331 -13.72730 -13.50206 -13.32377 -13.20096 -12.89155 -12.86243 -12.63129 -12.54053 -12.21848 -12.18466 -12.03702 -11.83621 -11.65445 -11.49448 -10.66643 -10.37712 -10.13834 -10.11172 -9.91509 -9.15855 -8.22164 -6.36261 0.05757 0.23943 0.51619 1.37799 1.41237 1.51361 2.16943 2.36797 2.40888 2.60671 3.08275 3.24438 3.73243 3.78635 3.87042 3.89612 4.22827 4.23753 4.35392 4.40720 4.44671 4.46014 4.50754 4.66999 4.76598 4.84635 4.88660 4.95778 5.00152 5.02964 5.07420 5.11088 5.13013 5.15238 5.28908 5.37204 5.44028 5.46390 5.62760 5.68231 5.71738 5.74702 6.01688 6.09032 6.49221 6.76170 7.29705 7.39777 8.83453 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.008736 B = 0.006294 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3204.392328 B = 4447.716332 C = 6896.354550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.023 4.023 4 C -0.233 4.233 5 C 0.546 3.454 6 O -0.561 6.561 7 N -0.564 5.564 8 C 0.257 3.743 9 C -0.540 4.540 10 H 0.050 0.950 11 C 0.024 3.976 12 N -0.919 5.919 13 Si 0.953 3.047 14 H -0.272 1.272 15 H -0.274 1.274 16 H -0.279 1.279 17 C 0.138 3.862 18 C -0.107 4.107 19 C -0.133 4.133 20 C 0.078 3.922 21 F -0.141 7.141 22 C -0.137 4.137 23 C -0.096 4.096 24 C -0.100 4.100 25 C -0.123 4.123 26 H 0.039 0.961 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.122 0.878 32 H 0.035 0.965 33 H 0.021 0.979 34 H 0.268 0.732 35 H 0.138 0.862 36 H 0.165 0.835 37 H 0.158 0.842 38 H 0.120 0.880 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.035 0.965 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.110 0.047 -10.307 10.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.128 4.128 3 C -0.025 4.025 4 C -0.254 4.254 5 C 0.340 3.660 6 O -0.443 6.443 7 N -0.290 5.290 8 C 0.138 3.862 9 C -0.579 4.579 10 H 0.068 0.932 11 C -0.176 4.176 12 N -0.558 5.558 13 Si 0.778 3.222 14 H -0.197 1.197 15 H -0.199 1.199 16 H -0.205 1.205 17 C 0.047 3.953 18 C -0.127 4.127 19 C -0.152 4.152 20 C 0.059 3.941 21 F -0.119 7.119 22 C -0.156 4.156 23 C -0.116 4.116 24 C -0.137 4.137 25 C -0.180 4.180 26 H 0.058 0.942 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.118 0.882 30 H 0.091 0.909 31 H 0.140 0.860 32 H 0.053 0.947 33 H 0.039 0.961 34 H 0.077 0.923 35 H 0.156 0.844 36 H 0.182 0.818 37 H 0.176 0.824 38 H 0.138 0.862 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.054 0.946 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.295 0.221 -10.649 10.896 hybrid contribution -0.863 0.373 1.047 1.407 sum 1.432 0.594 -9.602 9.726 Atomic orbital electron populations 1.21708 0.93740 1.02886 1.01863 1.20781 0.97058 0.90957 1.04039 1.22805 0.89616 0.95839 0.94217 1.22453 1.07401 0.95744 0.99771 1.18906 0.78368 0.86390 0.82301 1.90636 1.53200 1.70277 1.30218 1.45784 1.62205 1.12649 1.08383 1.19186 0.95437 0.92837 0.78747 1.21605 0.97755 1.32110 1.06388 0.93171 1.25585 1.01513 0.94560 0.95944 1.70005 1.37786 1.34294 1.13695 0.85578 0.80226 0.78262 0.78097 1.19663 1.19923 1.20487 1.17977 0.92916 0.85174 0.99283 1.21215 0.93859 0.97618 0.99986 1.21166 1.01726 0.90862 1.01440 1.17685 0.93895 0.79534 1.03016 1.91471 1.87793 1.37884 1.94778 1.21131 0.95058 0.97509 1.01921 1.21105 0.99357 0.91731 0.99398 1.20924 0.98678 1.00793 0.93274 1.21446 0.95468 1.01134 0.99940 0.94165 0.91823 0.90307 0.88206 0.90950 0.85976 0.94687 0.96140 0.92256 0.84437 0.81784 0.82421 0.86199 0.90104 0.90811 0.92127 0.94605 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 9.90 71.98 0.71 -2.47 16 2 C -0.09 -2.15 6.10 29.85 0.18 -1.97 16 3 C -0.02 -0.70 4.61 -17.61 -0.08 -0.78 16 4 C -0.23 -8.89 8.78 23.42 0.21 -8.68 16 5 C 0.55 22.99 7.32 86.56 0.63 23.63 16 6 O -0.56 -23.91 11.32 -4.11 -0.05 -23.96 16 7 N -0.56 -24.58 2.51 -639.30 -1.61 -26.18 16 8 C 0.26 12.50 4.74 85.64 0.41 12.91 16 9 C -0.54 -28.31 9.38 25.60 0.24 -28.07 16 10 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 11 C 0.02 1.28 5.46 84.66 0.46 1.74 16 12 N -0.92 -50.29 13.29 21.45 0.28 -50.01 16 13 Si 0.95 41.88 29.54 68.60 2.03 43.91 16 14 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 15 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 16 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 17 C 0.14 5.53 4.80 38.15 0.18 5.71 16 18 C -0.11 -3.72 9.62 22.39 0.22 -3.51 16 19 C -0.13 -3.90 10.02 22.30 0.22 -3.68 16 20 C 0.08 2.35 7.30 22.38 0.16 2.51 16 21 F -0.14 -3.98 17.26 44.97 0.78 -3.21 16 22 C -0.14 -4.25 10.02 22.30 0.22 -4.03 16 23 C -0.10 -3.57 9.49 22.39 0.21 -3.36 16 24 C -0.10 -2.89 5.33 29.85 0.16 -2.74 16 25 C -0.12 -3.30 9.44 71.98 0.68 -2.62 16 26 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.07 1.76 8.03 -2.39 -0.02 1.74 16 31 H 0.12 5.06 6.29 -2.91 -0.02 5.04 16 32 H 0.04 1.76 6.25 -2.39 -0.01 1.74 16 33 H 0.02 1.06 7.82 -2.39 -0.02 1.04 16 34 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 35 H 0.14 4.51 8.06 -2.91 -0.02 4.48 16 36 H 0.16 3.71 8.06 -2.91 -0.02 3.69 16 37 H 0.16 3.95 8.06 -2.91 -0.02 3.93 16 38 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 39 H 0.08 1.90 8.13 -2.38 -0.02 1.88 16 40 H 0.07 2.62 5.60 -2.39 -0.01 2.60 16 41 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.03 1.16 6.86 -2.39 -0.02 1.14 16 43 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -59.64 363.73 7.25 -52.39 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 1.00 Total: 22.47 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: 4.82 Total: -15.41 kcal Atomic # 7 Polarization: -74.87 SS G_CDS: -1.32 Total: -76.19 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.05 Total: -23.96 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.78 Total: -3.21 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -59.64 7.25 -52.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759196491.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.552 kcal (2) G-P(sol) polarization free energy of solvation -59.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds