Wall clock time and date at job start Tue Mar 31 2020 08:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46689 * 2 1 4 4 C 1.52998 * 109.47037 * 119.99586 * 2 1 3 5 5 N 1.46503 * 109.46974 * 65.00514 * 4 2 1 6 6 C 1.46501 * 119.99729 * 270.05908 * 5 4 2 7 7 C 1.50702 * 109.46985 * 269.99733 * 6 5 4 8 8 H 1.07992 * 120.00127 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00054 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00432 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 120.00078 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47328 * 89.99979 * 11 9 7 13 13 H 1.48498 * 109.47272 * 210.00375 * 11 9 7 14 14 H 1.48506 * 109.47092 * 330.00115 * 11 9 7 15 15 C 1.34779 * 120.00293 * 90.05760 * 5 4 2 16 16 O 1.21283 * 119.99984 * 185.11728 * 15 5 4 17 17 C 1.50697 * 119.99442 * 4.83927 * 15 5 4 18 18 F 1.39902 * 109.47500 * 319.73410 * 17 15 5 19 19 F 1.39890 * 109.47121 * 79.74165 * 17 15 5 20 20 C 1.53008 * 109.46637 * 199.73935 * 17 15 5 21 21 O 1.42899 * 112.85053 * 54.45782 * 20 17 15 22 22 C 1.53776 * 113.61385 * 283.15089 * 20 17 15 23 23 C 1.53783 * 87.08195 * 220.02194 * 22 20 17 24 24 C 1.53784 * 87.08170 * 25.43257 * 23 22 20 25 25 H 1.08996 * 109.47264 * 299.99677 * 1 2 3 26 26 H 1.09000 * 109.47198 * 60.00035 * 1 2 3 27 27 H 1.09001 * 109.46856 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47264 * 240.00323 * 2 1 3 29 29 H 1.09005 * 109.46642 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47353 * 299.99374 * 3 2 1 31 31 H 1.08996 * 109.47003 * 60.00163 * 3 2 1 32 32 H 1.08999 * 109.47518 * 305.00348 * 4 2 1 33 33 H 1.09000 * 109.47433 * 185.00158 * 4 2 1 34 34 H 1.08993 * 109.47589 * 29.99723 * 6 5 4 35 35 H 1.09003 * 109.47278 * 149.99724 * 6 5 4 36 36 H 0.96991 * 120.00108 * 180.02562 * 10 9 7 37 37 H 0.96703 * 113.99828 * 304.37936 * 21 20 17 38 38 H 1.09009 * 113.61597 * 334.56575 * 22 20 17 39 39 H 1.08994 * 113.61689 * 105.47060 * 22 20 17 40 40 H 1.08994 * 113.61134 * 270.88419 * 23 22 20 41 41 H 1.08996 * 113.61646 * 139.97980 * 23 22 20 42 42 H 1.08995 * 113.61676 * 220.02315 * 24 23 22 43 43 H 1.08994 * 113.69052 * 89.12613 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6525 -2.1328 1.1906 6 6 0.3740 -2.5657 1.7601 7 6 0.5696 -2.9402 3.2067 8 1 1.5483 -2.8638 3.6567 9 6 -0.5008 -3.3813 3.9554 10 7 -0.3301 -3.7086 5.2177 11 14 -2.1937 -3.5141 3.1769 12 1 -2.3644 -4.8679 2.5911 13 1 -3.2339 -3.2880 4.2124 14 1 -2.3287 -2.4917 2.1083 15 6 2.4722 -3.0332 0.6127 16 8 2.1123 -4.1839 0.4808 17 6 3.8333 -2.6087 0.1248 18 9 3.7408 -1.3499 -0.4786 19 9 4.7171 -2.5433 1.2072 20 6 4.3498 -3.6262 -0.8946 21 8 3.4371 -3.8441 -1.9724 22 6 4.8752 -4.9236 -0.2580 23 6 6.0087 -4.8813 -1.2964 24 6 5.7930 -3.3597 -1.3539 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6054 -0.2617 2.1370 33 1 3.1263 -0.6442 1.2953 34 1 -0.3489 -1.7530 1.6898 35 1 0.0042 -3.4296 1.2079 36 1 -1.0831 -4.0193 5.7443 37 1 2.5525 -4.1142 -1.6901 38 1 5.2190 -4.7981 0.7688 39 1 4.2031 -5.7730 -0.3796 40 1 5.7663 -5.3920 -2.2283 41 1 6.9800 -5.1697 -0.8947 42 1 5.8618 -2.9466 -2.3601 43 1 6.3871 -2.8055 -0.6273 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767335233.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:56 Heat of formation + Delta-G solvation = -153.148931 kcal Electronic energy + Delta-G solvation = -28044.754181 eV Core-core repulsion = 23955.190035 eV Total energy + Delta-G solvation = -4089.564145 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.20344 -47.11775 -39.87374 -38.93207 -36.64976 -34.68337 -33.79414 -32.45108 -29.50291 -28.11268 -26.94236 -25.88391 -25.74688 -24.08388 -22.13113 -20.50871 -19.82835 -19.27423 -18.17356 -17.54359 -17.32800 -17.01390 -16.10651 -15.65272 -15.08641 -14.88183 -14.68430 -14.56833 -14.21329 -13.83362 -13.65732 -13.43122 -13.33604 -13.15886 -12.87526 -12.62463 -12.43240 -12.33263 -12.22801 -12.13078 -11.88432 -11.47077 -11.41899 -11.25459 -11.03582 -10.94249 -10.70461 -10.61634 -10.51915 -10.36420 -10.20116 -10.01003 -9.64286 -9.25680 -8.68431 -8.00238 -6.18290 -4.18914 2.56546 3.02423 3.21888 3.27496 3.30021 3.65736 3.78616 4.00458 4.25205 4.30070 4.37233 4.67707 4.80992 5.03638 5.04847 5.11236 5.14239 5.25948 5.29913 5.57675 5.63727 5.66831 5.78555 5.79851 5.83902 5.95950 6.02678 6.05365 6.06478 6.09528 6.23777 6.24021 6.39410 6.54031 6.58326 6.72543 7.00314 7.44732 7.46580 7.81122 8.22413 8.43291 8.84520 9.39882 10.94710 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.014668 B = 0.006097 C = 0.004978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.434850 B = 4591.601665 C = 5622.865186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.140 4.140 4 C 0.104 3.896 5 N -0.561 5.561 6 C 0.209 3.791 7 C -0.536 4.536 8 H 0.076 0.924 9 C 0.076 3.924 10 N -0.892 5.892 11 Si 0.874 3.126 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.265 1.265 15 C 0.479 3.521 16 O -0.512 6.512 17 C 0.260 3.740 18 F -0.179 7.179 19 F -0.176 7.176 20 C 0.087 3.913 21 O -0.525 6.525 22 C -0.149 4.149 23 C -0.131 4.131 24 C -0.121 4.121 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.044 0.956 35 H 0.040 0.960 36 H 0.266 0.734 37 H 0.391 0.609 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.886 5.413 -13.168 16.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.133 4.133 3 C -0.198 4.198 4 C -0.020 4.020 5 N -0.289 5.289 6 C 0.090 3.910 7 C -0.574 4.574 8 H 0.094 0.906 9 C -0.127 4.127 10 N -0.530 5.530 11 Si 0.700 3.300 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.189 1.189 15 C 0.261 3.739 16 O -0.389 6.389 17 C 0.220 3.780 18 F -0.160 7.160 19 F -0.157 7.157 20 C 0.043 3.957 21 O -0.333 6.333 22 C -0.187 4.187 23 C -0.168 4.168 24 C -0.158 4.158 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.243 0.757 38 H 0.115 0.885 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.093 0.907 42 H 0.103 0.897 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 9.067 4.950 -13.373 16.899 hybrid contribution -1.393 0.045 0.388 1.447 sum 7.674 4.995 -12.985 15.889 Atomic orbital electron populations 1.21980 0.95088 1.02481 1.01333 1.21655 0.96388 0.96446 0.98854 1.21727 1.00945 0.95484 1.01673 1.21912 1.00406 0.80835 0.98832 1.47994 1.20523 1.07048 1.53383 1.19972 0.79828 0.96306 0.94919 1.21266 0.97734 1.45348 0.93056 0.90600 1.24826 0.98828 0.94371 0.94675 1.69885 1.31766 1.44067 1.07302 0.86891 0.84263 0.79386 0.79449 1.19790 1.20863 1.18934 1.20478 0.85827 0.86872 0.80745 1.90701 1.74074 1.17714 1.56433 1.22174 0.89373 0.82717 0.83770 1.93013 1.96375 1.42844 1.83771 1.93036 1.69978 1.96420 1.56228 1.22947 0.91082 0.94341 0.87294 1.86410 1.25831 1.90359 1.30733 1.23527 0.98248 0.97171 0.99739 1.22750 0.98902 0.95362 0.99813 1.23040 0.91350 0.98239 1.03204 0.92435 0.93175 0.91941 0.90353 0.92632 0.92698 0.92567 0.89292 0.90646 0.93821 0.94223 0.92380 0.75725 0.88504 0.89315 0.89453 0.90694 0.89726 0.88221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.18 37.16 0.30 -1.87 16 2 C -0.11 -1.62 2.48 -90.62 -0.22 -1.84 16 3 C -0.14 -1.62 9.19 37.16 0.34 -1.28 16 4 C 0.10 1.75 4.41 -4.04 -0.02 1.73 16 5 N -0.56 -11.36 2.28 -175.06 -0.40 -11.76 16 6 C 0.21 4.89 3.34 -5.19 -0.02 4.87 16 7 C -0.54 -14.95 9.94 -34.44 -0.34 -15.29 16 8 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 9 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 10 N -0.89 -26.92 13.96 55.43 0.77 -26.15 16 11 Si 0.87 20.86 27.47 -169.99 -4.67 16.19 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 15 C 0.48 9.51 6.69 -10.99 -0.07 9.44 16 16 O -0.51 -11.17 13.76 -5.38 -0.07 -11.25 16 17 C 0.26 4.31 1.05 -27.88 -0.03 4.28 16 18 F -0.18 -2.76 11.90 2.25 0.03 -2.74 16 19 F -0.18 -2.98 15.11 2.25 0.03 -2.95 16 20 C 0.09 1.27 0.78 -89.80 -0.07 1.20 16 21 O -0.52 -7.90 13.35 -46.16 -0.62 -8.52 16 22 C -0.15 -2.07 6.62 -25.92 -0.17 -2.24 16 23 C -0.13 -1.43 8.02 -25.92 -0.21 -1.64 16 24 C -0.12 -1.43 7.33 -25.91 -0.19 -1.62 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 1.02 5.89 -51.93 -0.31 0.71 16 28 H 0.08 1.16 6.42 -51.93 -0.33 0.83 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 1.54 8.07 -51.93 -0.42 1.12 16 33 H 0.08 1.22 5.66 -51.93 -0.29 0.93 16 34 H 0.04 0.97 5.03 -51.93 -0.26 0.71 16 35 H 0.04 0.97 6.79 -51.93 -0.35 0.62 16 36 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.39 5.84 7.06 45.56 0.32 6.17 16 38 H 0.10 1.38 7.30 -51.92 -0.38 1.00 16 39 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.10 1.09 7.68 -51.93 -0.40 0.69 16 LS Contribution 341.64 15.07 5.15 5.15 Total: -1.00 -30.64 341.64 -6.39 -37.03 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -5.82 Total: 7.21 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -0.80 Total: -2.21 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.37 Total: -37.91 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.69 Total: -19.77 kcal Atomic # 9 Polarization: -5.75 SS G_CDS: 0.06 Total: -5.68 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.64 -6.39 -37.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767335233.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.116 kcal (2) G-P(sol) polarization free energy of solvation -30.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds