Wall clock time and date at job start Tue Mar 31 2020 08:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46689 * 2 1 4 4 C 1.52998 * 109.47037 * 119.99586 * 2 1 3 5 5 N 1.46503 * 109.46974 * 65.00514 * 4 2 1 6 6 C 1.46501 * 119.99729 * 270.05908 * 5 4 2 7 7 C 1.50702 * 109.46985 * 269.99733 * 6 5 4 8 8 H 1.07992 * 120.00127 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00054 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00432 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 120.00078 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47328 * 89.99979 * 11 9 7 13 13 H 1.48498 * 109.47272 * 210.00375 * 11 9 7 14 14 H 1.48506 * 109.47092 * 330.00115 * 11 9 7 15 15 C 1.34779 * 120.00293 * 90.05760 * 5 4 2 16 16 O 1.21283 * 119.99984 * 185.11728 * 15 5 4 17 17 C 1.50697 * 119.99442 * 4.83927 * 15 5 4 18 18 F 1.39902 * 109.47500 * 319.73410 * 17 15 5 19 19 F 1.39890 * 109.47121 * 79.74165 * 17 15 5 20 20 C 1.53008 * 109.46637 * 199.73935 * 17 15 5 21 21 O 1.42899 * 112.85053 * 54.45782 * 20 17 15 22 22 C 1.53776 * 113.61385 * 283.15089 * 20 17 15 23 23 C 1.53783 * 87.08195 * 220.02194 * 22 20 17 24 24 C 1.53784 * 87.08170 * 25.43257 * 23 22 20 25 25 H 1.08996 * 109.47264 * 299.99677 * 1 2 3 26 26 H 1.09000 * 109.47198 * 60.00035 * 1 2 3 27 27 H 1.09001 * 109.46856 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47264 * 240.00323 * 2 1 3 29 29 H 1.09005 * 109.46642 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47353 * 299.99374 * 3 2 1 31 31 H 1.08996 * 109.47003 * 60.00163 * 3 2 1 32 32 H 1.08999 * 109.47518 * 305.00348 * 4 2 1 33 33 H 1.09000 * 109.47433 * 185.00158 * 4 2 1 34 34 H 1.08993 * 109.47589 * 29.99723 * 6 5 4 35 35 H 1.09003 * 109.47278 * 149.99724 * 6 5 4 36 36 H 0.96991 * 120.00108 * 180.02562 * 10 9 7 37 37 H 0.96703 * 113.99828 * 304.37936 * 21 20 17 38 38 H 1.09009 * 113.61597 * 334.56575 * 22 20 17 39 39 H 1.08994 * 113.61689 * 105.47060 * 22 20 17 40 40 H 1.08994 * 113.61134 * 270.88419 * 23 22 20 41 41 H 1.08996 * 113.61646 * 139.97980 * 23 22 20 42 42 H 1.08995 * 113.61676 * 220.02315 * 24 23 22 43 43 H 1.08994 * 113.69052 * 89.12613 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6525 -2.1328 1.1906 6 6 0.3740 -2.5657 1.7601 7 6 0.5696 -2.9402 3.2067 8 1 1.5483 -2.8638 3.6567 9 6 -0.5008 -3.3813 3.9554 10 7 -0.3301 -3.7086 5.2177 11 14 -2.1937 -3.5141 3.1769 12 1 -2.3644 -4.8679 2.5911 13 1 -3.2339 -3.2880 4.2124 14 1 -2.3287 -2.4917 2.1083 15 6 2.4722 -3.0332 0.6127 16 8 2.1123 -4.1839 0.4808 17 6 3.8333 -2.6087 0.1248 18 9 3.7408 -1.3499 -0.4786 19 9 4.7171 -2.5433 1.2072 20 6 4.3498 -3.6262 -0.8946 21 8 3.4371 -3.8441 -1.9724 22 6 4.8752 -4.9236 -0.2580 23 6 6.0087 -4.8813 -1.2964 24 6 5.7930 -3.3597 -1.3539 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6054 -0.2617 2.1370 33 1 3.1263 -0.6442 1.2953 34 1 -0.3489 -1.7530 1.6898 35 1 0.0042 -3.4296 1.2079 36 1 -1.0831 -4.0193 5.7443 37 1 2.5525 -4.1142 -1.6901 38 1 5.2190 -4.7981 0.7688 39 1 4.2031 -5.7730 -0.3796 40 1 5.7663 -5.3920 -2.2283 41 1 6.9800 -5.1697 -0.8947 42 1 5.8618 -2.9466 -2.3601 43 1 6.3871 -2.8055 -0.6273 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767335233.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:55 Heat of formation + Delta-G solvation = -172.781768 kcal Electronic energy + Delta-G solvation = -28045.605525 eV Core-core repulsion = 23955.190035 eV Total energy + Delta-G solvation = -4090.415489 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.54777 -48.45698 -41.26988 -40.21668 -38.05839 -35.80466 -35.44277 -34.36073 -31.19739 -29.62637 -28.03419 -27.14657 -26.90935 -25.58501 -23.72299 -21.83575 -20.89787 -20.67613 -19.50003 -19.24026 -18.80847 -18.74078 -17.54547 -16.95473 -16.46737 -16.32141 -16.16794 -15.95607 -15.43767 -15.29849 -15.03468 -14.78702 -14.70012 -14.58170 -14.38209 -14.08056 -13.85918 -13.67007 -13.43488 -13.31666 -13.19962 -13.02068 -12.73051 -12.55915 -12.42227 -12.23888 -12.04780 -11.89184 -11.83220 -11.80076 -11.65933 -11.53800 -11.16979 -10.86586 -10.70474 -9.67605 -8.38533 -6.45570 0.98788 1.30491 1.34020 1.42138 1.56511 2.26702 2.36070 2.59070 2.65030 2.94854 3.01035 3.25656 3.62190 3.74098 3.79990 3.80742 3.93014 4.15708 4.29308 4.44953 4.57867 4.61317 4.62248 4.70742 4.75391 4.84230 4.86400 4.92932 4.98280 4.99087 5.00772 5.04043 5.22137 5.24357 5.30903 5.35660 5.44932 5.49668 6.09592 6.19632 6.27717 6.55841 6.72407 7.18363 8.78216 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.014668 B = 0.006097 C = 0.004978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.434850 B = 4591.601665 C = 5622.865186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.107 4.107 3 C -0.135 4.135 4 C 0.099 3.901 5 N -0.569 5.569 6 C 0.222 3.778 7 C -0.544 4.544 8 H 0.027 0.973 9 C 0.017 3.983 10 N -0.941 5.941 11 Si 0.943 3.057 12 H -0.272 1.272 13 H -0.275 1.275 14 H -0.236 1.236 15 C 0.468 3.532 16 O -0.539 6.539 17 C 0.269 3.731 18 F -0.170 7.170 19 F -0.179 7.179 20 C 0.076 3.924 21 O -0.525 6.525 22 C -0.159 4.159 23 C -0.114 4.114 24 C -0.113 4.113 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.030 0.970 36 H 0.270 0.730 37 H 0.389 0.611 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.953 6.725 -15.496 19.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.126 4.126 3 C -0.193 4.193 4 C -0.023 4.023 5 N -0.297 5.297 6 C 0.100 3.900 7 C -0.582 4.582 8 H 0.046 0.954 9 C -0.182 4.182 10 N -0.580 5.580 11 Si 0.765 3.235 12 H -0.197 1.197 13 H -0.200 1.200 14 H -0.159 1.159 15 C 0.251 3.749 16 O -0.418 6.418 17 C 0.229 3.771 18 F -0.150 7.150 19 F -0.160 7.160 20 C 0.032 3.968 21 O -0.334 6.334 22 C -0.197 4.197 23 C -0.151 4.151 24 C -0.150 4.150 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.058 0.942 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.048 0.952 36 H 0.079 0.921 37 H 0.240 0.760 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.113 0.887 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 9.167 6.300 -15.723 19.260 hybrid contribution -1.343 -0.369 1.193 1.834 sum 7.824 5.932 -14.530 17.536 Atomic orbital electron populations 1.21973 0.95006 1.01340 1.02564 1.21601 0.96437 0.97750 0.96828 1.21702 1.01265 0.93487 1.02864 1.22147 1.00793 0.79190 1.00175 1.48066 1.19833 1.08634 1.53184 1.19646 0.81903 0.96510 0.91891 1.21473 0.95785 1.45482 0.95466 0.95439 1.25800 1.03613 0.93710 0.95042 1.70038 1.33418 1.45428 1.09152 0.85787 0.78328 0.80057 0.79322 1.19725 1.19987 1.15858 1.21144 0.86997 0.86501 0.80262 1.90673 1.74948 1.18772 1.57384 1.22053 0.87272 0.83718 0.84077 1.93028 1.96245 1.42321 1.83452 1.93030 1.69735 1.96509 1.56719 1.23302 0.92261 0.94141 0.87071 1.86404 1.25831 1.90280 1.30840 1.23583 0.99510 0.96355 1.00267 1.22722 0.98715 0.94754 0.98958 1.23125 0.88703 0.99097 1.04070 0.92416 0.90764 0.94166 0.90734 0.92154 0.90822 0.92077 0.90191 0.90140 0.91936 0.95181 0.92089 0.75999 0.89416 0.90677 0.88727 0.88333 0.88450 0.87198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.03 8.18 71.98 0.59 -3.44 16 2 C -0.11 -2.84 2.48 -10.79 -0.03 -2.86 16 3 C -0.14 -2.75 9.19 71.98 0.66 -2.09 16 4 C 0.10 3.31 4.41 86.38 0.38 3.69 16 5 N -0.57 -23.33 2.28 -826.15 -1.89 -25.21 16 6 C 0.22 10.44 3.34 85.63 0.29 10.73 16 7 C -0.54 -31.41 9.94 25.60 0.25 -31.16 16 8 H 0.03 1.80 8.06 -2.91 -0.02 1.77 16 9 C 0.02 0.99 5.47 84.65 0.46 1.46 16 10 N -0.94 -58.57 13.96 21.45 0.30 -58.27 16 11 Si 0.94 42.97 27.47 68.60 1.88 44.85 16 12 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 14 H -0.24 -9.55 6.54 99.48 0.65 -8.90 16 15 C 0.47 18.87 6.69 87.66 0.59 19.46 16 16 O -0.54 -24.20 13.76 7.41 0.10 -24.10 16 17 C 0.27 8.80 1.05 29.85 0.03 8.83 16 18 F -0.17 -4.99 11.90 44.97 0.54 -4.45 16 19 F -0.18 -6.05 15.11 44.97 0.68 -5.37 16 20 C 0.08 2.15 0.78 -10.26 -0.01 2.14 16 21 O -0.53 -15.36 13.35 -138.53 -1.85 -17.21 16 22 C -0.16 -4.35 6.62 31.12 0.21 -4.14 16 23 C -0.11 -2.23 8.02 31.12 0.25 -1.98 16 24 C -0.11 -2.38 7.33 31.12 0.23 -2.15 16 25 H 0.06 1.51 8.14 -2.39 -0.02 1.50 16 26 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.04 1.24 5.89 -2.39 -0.01 1.22 16 28 H 0.07 2.06 6.42 -2.39 -0.02 2.04 16 29 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 2.78 8.07 -2.39 -0.02 2.77 16 33 H 0.08 2.57 5.66 -2.39 -0.01 2.55 16 34 H 0.06 2.72 5.03 -2.39 -0.01 2.70 16 35 H 0.03 1.48 6.79 -2.39 -0.02 1.47 16 36 H 0.27 15.59 8.31 -92.72 -0.77 14.82 16 37 H 0.39 11.67 7.06 -74.06 -0.52 11.15 16 38 H 0.09 2.52 7.30 -2.38 -0.02 2.50 16 39 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.11 2.11 7.68 -2.39 -0.02 2.09 16 Total: -1.00 -68.39 341.64 4.11 -64.27 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: 0.45 Total: 27.02 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 3.90 Total: -1.53 kcal Atomic # 7 Polarization: -81.90 SS G_CDS: -1.59 Total: -83.49 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -1.75 Total: -41.31 kcal Atomic # 9 Polarization: -11.04 SS G_CDS: 1.21 Total: -9.82 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.88 Total: 44.85 kcal Total: -68.39 4.11 -64.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767335233.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.511 kcal (2) G-P(sol) polarization free energy of solvation -68.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds