Wall clock time and date at job start Tue Mar 31 2020 08:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47146 * 2 1 4 4 C 1.52999 * 109.47024 * 120.00221 * 2 1 3 5 5 N 1.46897 * 109.47497 * 60.95243 * 4 2 1 6 6 C 1.46902 * 110.99868 * 73.48225 * 5 4 2 7 7 C 1.50703 * 109.47370 * 279.60805 * 6 5 4 8 8 H 1.07999 * 119.99438 * 2.96941 * 7 6 5 9 9 C 1.37871 * 119.99788 * 182.96761 * 7 6 5 10 10 N 1.31513 * 120.00648 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99639 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47636 * 90.00048 * 11 9 7 13 13 H 1.48507 * 109.47063 * 210.00012 * 11 9 7 14 14 H 1.48504 * 109.47288 * 329.99699 * 11 9 7 15 15 C 1.46900 * 111.00363 * 197.43458 * 5 4 2 16 16 C 1.50704 * 109.46847 * 66.04764 * 15 5 4 17 17 C 1.34005 * 124.92354 * 90.56961 * 16 15 5 18 18 C 1.46781 * 106.18575 * 180.02562 * 17 16 15 19 19 C 1.39441 * 134.31042 * 179.35775 * 18 17 16 20 20 C 1.37915 * 119.57716 * 180.02562 * 19 18 17 21 21 F 1.35103 * 119.88503 * 179.97438 * 20 19 18 22 22 C 1.38945 * 120.22584 * 359.97438 * 20 19 18 23 23 C 1.37813 * 120.66447 * 0.02562 * 22 20 19 24 24 C 1.38913 * 119.99340 * 0.25472 * 23 22 20 25 25 O 1.34432 * 124.92301 * 269.97818 * 16 15 5 26 26 H 1.08996 * 109.47076 * 60.00027 * 1 2 3 27 27 H 1.09001 * 109.47212 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46702 * 299.99875 * 1 2 3 29 29 H 1.09006 * 109.47150 * 239.99780 * 2 1 3 30 30 H 1.09002 * 109.46969 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47045 * 300.00167 * 3 2 1 32 32 H 1.08995 * 109.46820 * 59.99781 * 3 2 1 33 33 H 1.09004 * 109.46941 * 300.95115 * 4 2 1 34 34 H 1.09003 * 109.46786 * 180.95651 * 4 2 1 35 35 H 1.09006 * 109.47068 * 39.61020 * 6 5 4 36 36 H 1.09002 * 109.47221 * 159.60569 * 6 5 4 37 37 H 0.97002 * 120.00262 * 180.02562 * 10 9 7 38 38 H 1.08996 * 109.47309 * 306.05003 * 15 5 4 39 39 H 1.08997 * 109.47080 * 186.04531 * 15 5 4 40 40 H 1.07998 * 126.90119 * 359.40524 * 17 16 15 41 41 H 1.08001 * 120.20900 * 0.02562 * 19 18 17 42 42 H 1.07996 * 119.67030 * 179.97438 * 22 20 19 43 43 H 1.08005 * 120.00224 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.5693 -2.1127 1.2378 6 6 2.3023 -2.9083 0.2439 7 6 1.7245 -2.6579 -1.1253 8 1 0.9275 -1.9401 -1.2519 9 6 2.2133 -3.3451 -2.2160 10 7 3.1835 -4.2195 -2.0616 11 14 1.4976 -3.0342 -3.9131 12 1 2.2528 -1.9411 -4.5763 13 1 1.6000 -4.2716 -4.7279 14 1 0.0708 -2.6429 -3.7846 15 6 1.6727 -2.7146 2.5738 16 6 0.7190 -2.0212 3.5123 17 6 -0.5482 -2.3966 3.7338 18 6 -1.0926 -1.4441 4.7088 19 6 -2.3324 -1.2843 5.3269 20 6 -2.5185 -0.2524 6.2227 21 9 -3.7172 -0.0915 6.8247 22 6 -1.4774 0.6223 6.5083 23 6 -0.2482 0.4734 5.9030 24 6 -0.0423 -0.5561 4.9934 25 8 1.0195 -0.9431 4.2571 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6628 -0.2174 2.1391 34 1 3.1299 -0.7064 1.2578 35 1 3.3538 -2.6212 0.2526 36 1 2.2127 -3.9668 0.4881 37 1 3.5276 -4.7027 -2.8291 38 1 2.6918 -2.6039 2.9443 39 1 1.4202 -3.7733 2.5160 40 1 -1.0678 -3.2264 3.2780 41 1 -3.1416 -1.9644 5.1054 42 1 -1.6331 1.4275 7.2109 43 1 0.5535 1.1598 6.1325 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768153863.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:27 Heat of formation + Delta-G solvation = -19.527277 kcal Electronic energy + Delta-G solvation = -25079.157742 eV Core-core repulsion = 21426.157091 eV Total energy + Delta-G solvation = -3653.000651 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.98912 -42.43812 -37.96825 -37.32849 -34.04827 -32.96848 -32.47214 -30.18973 -29.93269 -27.40420 -26.47233 -26.25135 -24.15408 -22.85747 -22.09794 -21.25328 -20.65827 -19.07041 -17.79271 -17.52057 -16.65783 -16.34737 -16.08713 -15.60848 -15.11416 -14.84139 -14.69141 -14.36493 -13.96134 -13.90585 -13.53641 -13.15405 -13.00163 -12.67742 -12.59462 -12.34451 -12.07610 -11.91938 -11.76643 -11.73169 -11.32472 -11.08338 -11.03508 -10.78610 -10.56965 -10.25173 -10.23045 -10.12844 -9.98651 -9.50050 -9.13098 -8.52563 -8.43323 -8.19942 -7.41979 -6.06536 -4.05684 0.71669 1.06687 2.39833 2.70770 3.29371 3.36583 3.40398 3.43643 4.00116 4.35226 4.40069 4.56601 4.83910 4.86510 5.06807 5.16134 5.20028 5.28352 5.50407 5.60202 5.67495 5.72253 5.78518 5.86001 5.90906 5.92905 5.94327 6.05646 6.12670 6.24356 6.27084 6.42833 6.45024 6.50864 6.57231 6.65363 6.76337 7.05411 7.16942 7.19894 7.22113 7.35768 7.78553 7.99841 8.08230 8.43210 9.01048 9.56877 11.03938 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.020770 B = 0.003470 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.804482 B = 8067.582971 C = 8247.815759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.106 4.106 3 C -0.144 4.144 4 C 0.072 3.928 5 N -0.527 5.527 6 C 0.193 3.807 7 C -0.505 4.505 8 H 0.079 0.921 9 C 0.055 3.945 10 N -0.899 5.899 11 Si 0.892 3.108 12 H -0.281 1.281 13 H -0.288 1.288 14 H -0.272 1.272 15 C 0.122 3.878 16 C 0.075 3.925 17 C -0.202 4.202 18 C -0.095 4.095 19 C -0.110 4.110 20 C 0.078 3.922 21 F -0.141 7.141 22 C -0.136 4.136 23 C -0.075 4.075 24 C 0.040 3.960 25 O -0.190 6.190 26 H 0.035 0.965 27 H 0.074 0.926 28 H 0.031 0.969 29 H 0.112 0.888 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.041 0.959 33 H 0.053 0.947 34 H 0.025 0.975 35 H -0.003 1.003 36 H 0.030 0.970 37 H 0.261 0.739 38 H 0.045 0.955 39 H 0.107 0.893 40 H 0.162 0.838 41 H 0.139 0.861 42 H 0.144 0.856 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.348 7.691 14.520 17.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.124 4.124 3 C -0.201 4.201 4 C -0.056 4.056 5 N -0.252 5.252 6 C 0.068 3.932 7 C -0.543 4.543 8 H 0.097 0.903 9 C -0.146 4.146 10 N -0.539 5.539 11 Si 0.720 3.280 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.197 1.197 15 C -0.006 4.006 16 C 0.027 3.973 17 C -0.221 4.221 18 C -0.097 4.097 19 C -0.129 4.129 20 C 0.058 3.942 21 F -0.119 7.119 22 C -0.155 4.155 23 C -0.093 4.093 24 C -0.008 4.008 25 O -0.092 6.092 26 H 0.055 0.945 27 H 0.093 0.907 28 H 0.050 0.950 29 H 0.130 0.870 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.014 0.986 36 H 0.049 0.951 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.125 0.875 40 H 0.179 0.821 41 H 0.157 0.843 42 H 0.162 0.838 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.506 7.688 14.298 17.489 hybrid contribution 0.197 0.068 -0.620 0.654 sum -6.309 7.756 13.678 16.943 Atomic orbital electron populations 1.21645 0.95608 1.02594 0.98752 1.21429 0.96095 0.94019 1.00850 1.21832 1.00401 0.97401 1.00515 1.22057 0.96510 0.89373 0.97668 1.62234 1.58398 1.02330 1.02274 1.19846 0.91300 0.92455 0.89559 1.21378 1.19356 1.22822 0.90744 0.90309 1.24988 0.95226 0.95183 0.99214 1.69950 1.27013 1.26170 1.30738 0.86579 0.79702 0.77581 0.84121 1.20740 1.21349 1.19656 1.20807 0.94317 0.97461 0.87997 1.22680 0.96166 0.85886 0.92562 1.22168 0.94324 1.03399 1.02257 1.19724 0.93815 0.97002 0.99114 1.20392 0.97104 0.98354 0.97004 1.17336 0.81664 0.98003 0.97150 1.91490 1.43160 1.95309 1.81984 1.20768 0.91611 1.00574 1.02532 1.19690 0.97614 0.96447 0.95581 1.19612 0.86212 0.98026 0.96971 1.84041 1.36229 1.41213 1.47670 0.94548 0.90695 0.94958 0.86973 0.93392 0.93214 0.93970 0.92856 0.95685 0.98568 0.95144 0.92957 0.93695 0.87474 0.82060 0.84331 0.83845 0.84249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.40 37.16 0.31 -2.01 16 2 C -0.11 -1.96 2.40 -90.62 -0.22 -2.18 16 3 C -0.14 -2.25 9.19 37.16 0.34 -1.91 16 4 C 0.07 1.35 4.27 -3.83 -0.02 1.33 16 5 N -0.53 -10.38 3.70 -237.51 -0.88 -11.26 16 6 C 0.19 4.58 4.79 -4.97 -0.02 4.55 16 7 C -0.50 -13.00 7.24 -34.44 -0.25 -13.25 16 8 H 0.08 1.99 4.58 -52.49 -0.24 1.75 16 9 C 0.06 1.48 5.46 -17.82 -0.10 1.38 16 10 N -0.90 -25.47 13.29 55.43 0.74 -24.73 16 11 Si 0.89 20.84 29.54 -169.99 -5.02 15.81 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 15 C 0.12 2.02 5.43 -4.97 -0.03 2.00 16 16 C 0.08 1.17 5.86 -35.80 -0.21 0.96 16 17 C -0.20 -2.94 11.01 -37.62 -0.41 -3.35 16 18 C -0.10 -1.34 6.39 -105.16 -0.67 -2.01 16 19 C -0.11 -1.35 10.07 -39.25 -0.40 -1.75 16 20 C 0.08 0.91 7.29 -39.44 -0.29 0.62 16 21 F -0.14 -1.66 17.26 2.25 0.04 -1.62 16 22 C -0.14 -1.39 9.99 -39.48 -0.39 -1.78 16 23 C -0.07 -0.83 10.06 -39.49 -0.40 -1.23 16 24 C 0.04 0.56 7.41 -38.50 -0.29 0.27 16 25 O -0.19 -2.96 9.52 3.74 0.04 -2.92 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 1.50 6.74 -51.93 -0.35 1.15 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.11 2.44 5.14 -51.93 -0.27 2.17 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.95 6.07 -51.93 -0.32 0.64 16 34 H 0.02 0.48 7.74 -51.93 -0.40 0.08 16 35 H 0.00 -0.09 7.67 -51.93 -0.40 -0.49 16 36 H 0.03 0.76 7.65 -51.93 -0.40 0.37 16 37 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.04 0.72 8.12 -51.93 -0.42 0.30 16 39 H 0.11 1.66 7.80 -51.93 -0.41 1.26 16 40 H 0.16 2.12 8.06 -52.49 -0.42 1.69 16 41 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 42 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.14 1.20 8.06 -52.48 -0.42 0.78 16 LS Contribution 352.64 15.07 5.31 5.31 Total: -1.00 -27.91 352.64 -8.94 -36.86 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.14 Total: 0.90 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -3.03 Total: -18.36 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: -0.14 Total: -35.99 kcal Atomic # 8 Polarization: -2.96 SS G_CDS: 0.04 Total: -2.92 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.91 -8.94 -36.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768153863.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.329 kcal (2) G-P(sol) polarization free energy of solvation -27.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds