Wall clock time and date at job start Tue Mar 31 2020 08:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47146 * 2 1 4 4 C 1.52999 * 109.47024 * 120.00221 * 2 1 3 5 5 N 1.46897 * 109.47497 * 60.95243 * 4 2 1 6 6 C 1.46902 * 110.99868 * 73.48225 * 5 4 2 7 7 C 1.50703 * 109.47370 * 279.60805 * 6 5 4 8 8 H 1.07999 * 119.99438 * 2.96941 * 7 6 5 9 9 C 1.37871 * 119.99788 * 182.96761 * 7 6 5 10 10 N 1.31513 * 120.00648 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99639 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47636 * 90.00048 * 11 9 7 13 13 H 1.48507 * 109.47063 * 210.00012 * 11 9 7 14 14 H 1.48504 * 109.47288 * 329.99699 * 11 9 7 15 15 C 1.46900 * 111.00363 * 197.43458 * 5 4 2 16 16 C 1.50704 * 109.46847 * 66.04764 * 15 5 4 17 17 C 1.34005 * 124.92354 * 90.56961 * 16 15 5 18 18 C 1.46781 * 106.18575 * 180.02562 * 17 16 15 19 19 C 1.39441 * 134.31042 * 179.35775 * 18 17 16 20 20 C 1.37915 * 119.57716 * 180.02562 * 19 18 17 21 21 F 1.35103 * 119.88503 * 179.97438 * 20 19 18 22 22 C 1.38945 * 120.22584 * 359.97438 * 20 19 18 23 23 C 1.37813 * 120.66447 * 0.02562 * 22 20 19 24 24 C 1.38913 * 119.99340 * 0.25472 * 23 22 20 25 25 O 1.34432 * 124.92301 * 269.97818 * 16 15 5 26 26 H 1.08996 * 109.47076 * 60.00027 * 1 2 3 27 27 H 1.09001 * 109.47212 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46702 * 299.99875 * 1 2 3 29 29 H 1.09006 * 109.47150 * 239.99780 * 2 1 3 30 30 H 1.09002 * 109.46969 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47045 * 300.00167 * 3 2 1 32 32 H 1.08995 * 109.46820 * 59.99781 * 3 2 1 33 33 H 1.09004 * 109.46941 * 300.95115 * 4 2 1 34 34 H 1.09003 * 109.46786 * 180.95651 * 4 2 1 35 35 H 1.09006 * 109.47068 * 39.61020 * 6 5 4 36 36 H 1.09002 * 109.47221 * 159.60569 * 6 5 4 37 37 H 0.97002 * 120.00262 * 180.02562 * 10 9 7 38 38 H 1.08996 * 109.47309 * 306.05003 * 15 5 4 39 39 H 1.08997 * 109.47080 * 186.04531 * 15 5 4 40 40 H 1.07998 * 126.90119 * 359.40524 * 17 16 15 41 41 H 1.08001 * 120.20900 * 0.02562 * 19 18 17 42 42 H 1.07996 * 119.67030 * 179.97438 * 22 20 19 43 43 H 1.08005 * 120.00224 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.5693 -2.1127 1.2378 6 6 2.3023 -2.9083 0.2439 7 6 1.7245 -2.6579 -1.1253 8 1 0.9275 -1.9401 -1.2519 9 6 2.2133 -3.3451 -2.2160 10 7 3.1835 -4.2195 -2.0616 11 14 1.4976 -3.0342 -3.9131 12 1 2.2528 -1.9411 -4.5763 13 1 1.6000 -4.2716 -4.7279 14 1 0.0708 -2.6429 -3.7846 15 6 1.6727 -2.7146 2.5738 16 6 0.7190 -2.0212 3.5123 17 6 -0.5482 -2.3966 3.7338 18 6 -1.0926 -1.4441 4.7088 19 6 -2.3324 -1.2843 5.3269 20 6 -2.5185 -0.2524 6.2227 21 9 -3.7172 -0.0915 6.8247 22 6 -1.4774 0.6223 6.5083 23 6 -0.2482 0.4734 5.9030 24 6 -0.0423 -0.5561 4.9934 25 8 1.0195 -0.9431 4.2571 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6628 -0.2174 2.1391 34 1 3.1299 -0.7064 1.2578 35 1 3.3538 -2.6212 0.2526 36 1 2.2127 -3.9668 0.4881 37 1 3.5276 -4.7027 -2.8291 38 1 2.6918 -2.6039 2.9443 39 1 1.4202 -3.7733 2.5160 40 1 -1.0678 -3.2264 3.2780 41 1 -3.1416 -1.9644 5.1054 42 1 -1.6331 1.4275 7.2109 43 1 0.5535 1.1598 6.1325 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768153863.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:26 Heat of formation + Delta-G solvation = -32.668372 kcal Electronic energy + Delta-G solvation = -25079.727582 eV Core-core repulsion = 21426.157091 eV Total energy + Delta-G solvation = -3653.570492 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.89933 -43.51068 -39.32224 -38.49090 -35.46699 -34.75059 -33.77315 -31.35457 -30.99565 -29.13600 -27.84586 -27.58450 -25.75252 -23.96358 -23.24844 -22.65336 -21.90387 -20.61169 -18.79640 -18.64823 -18.30501 -17.53973 -17.23464 -16.72934 -16.50093 -16.39790 -16.01474 -15.57522 -15.34111 -15.25144 -14.62599 -14.40282 -14.14016 -14.06671 -13.96237 -13.66203 -13.55770 -13.26345 -13.19409 -12.93144 -12.81975 -12.71322 -12.61073 -12.33637 -11.97430 -11.88457 -11.67495 -11.51556 -11.34656 -11.15220 -10.92734 -10.48258 -9.49802 -9.27069 -9.04645 -8.11960 -6.16470 -0.23453 0.10802 1.28335 1.43922 1.45499 1.55588 1.63537 2.45172 2.49210 3.02766 3.19452 3.32833 3.44140 3.62096 3.95624 4.03803 4.08354 4.15092 4.16798 4.27502 4.41667 4.48194 4.55320 4.69477 4.72397 4.77405 4.83634 4.89859 4.97143 5.02529 5.03449 5.10503 5.12483 5.17028 5.20234 5.28549 5.37460 5.41019 5.63412 5.64250 5.76459 5.86396 6.11654 6.13285 6.36639 6.56888 6.97279 7.49721 8.98531 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.020770 B = 0.003470 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.804482 B = 8067.582971 C = 8247.815759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.107 4.107 3 C -0.137 4.137 4 C 0.077 3.923 5 N -0.529 5.529 6 C 0.208 3.792 7 C -0.505 4.505 8 H 0.084 0.916 9 C 0.003 3.997 10 N -0.937 5.937 11 Si 0.953 3.047 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.264 1.264 15 C 0.124 3.876 16 C 0.056 3.944 17 C -0.196 4.196 18 C -0.115 4.115 19 C -0.115 4.115 20 C 0.073 3.927 21 F -0.141 7.141 22 C -0.120 4.120 23 C -0.074 4.074 24 C 0.022 3.978 25 O -0.202 6.202 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.043 0.957 29 H 0.078 0.922 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.013 0.987 35 H -0.032 1.032 36 H 0.011 0.989 37 H 0.260 0.740 38 H 0.047 0.953 39 H 0.112 0.888 40 H 0.170 0.830 41 H 0.151 0.849 42 H 0.178 0.822 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.907 9.823 15.667 20.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.126 4.126 3 C -0.195 4.195 4 C -0.051 4.051 5 N -0.254 5.254 6 C 0.083 3.917 7 C -0.543 4.543 8 H 0.101 0.899 9 C -0.195 4.195 10 N -0.578 5.578 11 Si 0.779 3.221 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.188 1.188 15 C -0.004 4.004 16 C 0.008 3.992 17 C -0.216 4.216 18 C -0.116 4.116 19 C -0.134 4.134 20 C 0.054 3.946 21 F -0.119 7.119 22 C -0.139 4.139 23 C -0.092 4.092 24 C -0.026 4.026 25 O -0.104 6.104 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.031 0.969 35 H -0.014 1.014 36 H 0.029 0.971 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.130 0.870 40 H 0.187 0.813 41 H 0.168 0.832 42 H 0.196 0.804 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -8.082 9.835 15.462 20.028 hybrid contribution 0.603 -0.536 -0.807 1.141 sum -7.480 9.299 14.655 18.899 Atomic orbital electron populations 1.21527 0.94972 1.01330 0.99828 1.21367 0.96597 0.95603 0.99017 1.21759 1.00471 0.95378 1.01869 1.22042 0.95779 0.88851 0.98412 1.62133 1.57404 1.02530 1.03303 1.19492 0.90009 0.91838 0.90405 1.21716 1.18863 1.22102 0.91618 0.89856 1.25765 0.95665 0.95173 1.02849 1.70073 1.28608 1.27509 1.31628 0.85617 0.79278 0.77347 0.79871 1.20233 1.21393 1.18830 1.20742 0.95043 0.97871 0.86702 1.22286 0.96233 0.87002 0.93668 1.22372 0.94014 1.03395 1.01831 1.19810 0.94685 0.97331 0.99821 1.20558 0.96886 0.98960 0.97008 1.17510 0.82058 0.98093 0.96930 1.91497 1.43248 1.95277 1.81898 1.21166 0.90447 1.00430 1.01812 1.20080 0.98730 0.95907 0.94474 1.20099 0.85752 0.99038 0.97665 1.83980 1.37071 1.41232 1.48133 0.93425 0.93085 0.93810 0.90396 0.93306 0.92056 0.92372 0.91565 0.96879 1.01401 0.97053 0.93081 0.93485 0.86992 0.81289 0.83162 0.80426 0.81560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.16 8.40 71.98 0.60 -3.56 16 2 C -0.11 -3.94 2.40 -10.79 -0.03 -3.96 16 3 C -0.14 -4.06 9.19 71.98 0.66 -3.40 16 4 C 0.08 2.90 4.27 86.30 0.37 3.27 16 5 N -0.53 -21.34 3.70 -905.35 -3.35 -24.68 16 6 C 0.21 10.30 4.79 85.56 0.41 10.71 16 7 C -0.50 -26.60 7.24 25.60 0.19 -26.42 16 8 H 0.08 4.25 4.58 -2.91 -0.01 4.24 16 9 C 0.00 0.16 5.46 84.65 0.46 0.62 16 10 N -0.94 -54.57 13.29 21.44 0.28 -54.28 16 11 Si 0.95 43.16 29.54 68.60 2.03 45.19 16 12 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 13 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 14 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 15 C 0.12 4.21 5.43 85.56 0.46 4.67 16 16 C 0.06 1.73 5.86 24.72 0.14 1.88 16 17 C -0.20 -5.65 11.01 23.54 0.26 -5.39 16 18 C -0.12 -3.09 6.39 -20.21 -0.13 -3.22 16 19 C -0.12 -2.63 10.07 22.48 0.23 -2.41 16 20 C 0.07 1.51 7.29 22.36 0.16 1.67 16 21 F -0.14 -2.92 17.26 44.97 0.78 -2.15 16 22 C -0.12 -2.01 9.99 22.34 0.22 -1.79 16 23 C -0.07 -1.41 10.06 22.33 0.22 -1.18 16 24 C 0.02 0.57 7.41 22.97 0.17 0.74 16 25 O -0.20 -6.13 9.52 -9.54 -0.09 -6.22 16 26 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.05 2.01 6.74 -2.39 -0.02 2.00 16 28 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.08 3.43 5.14 -2.38 -0.01 3.41 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.06 1.66 8.14 -2.38 -0.02 1.65 16 32 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.07 2.33 6.07 -2.39 -0.01 2.31 16 34 H 0.01 0.52 7.74 -2.39 -0.02 0.50 16 35 H -0.03 -1.72 7.67 -2.38 -0.02 -1.74 16 36 H 0.01 0.60 7.65 -2.39 -0.02 0.58 16 37 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 38 H 0.05 1.56 8.12 -2.39 -0.02 1.54 16 39 H 0.11 3.60 7.80 -2.39 -0.02 3.59 16 40 H 0.17 4.40 8.06 -2.91 -0.02 4.38 16 41 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 42 H 0.18 1.74 8.06 -2.91 -0.02 1.72 16 43 H 0.17 2.23 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -60.78 352.64 5.07 -55.71 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 1.01 Total: 14.19 kcal Atomic # 6 Polarization: -32.17 SS G_CDS: 4.41 Total: -27.76 kcal Atomic # 7 Polarization: -75.90 SS G_CDS: -3.06 Total: -78.96 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.09 Total: -6.22 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.78 Total: -2.15 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -60.78 5.07 -55.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768153863.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.043 kcal (2) G-P(sol) polarization free energy of solvation -60.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds