Wall clock time and date at job start Tue Mar 31 2020 08:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47043 * 301.66593 * 3 2 1 5 5 H 1.08996 * 109.46958 * 305.00364 * 4 3 2 6 6 N 1.46900 * 109.47085 * 65.00081 * 4 3 2 7 7 C 1.46906 * 110.99938 * 275.00163 * 6 4 3 8 8 C 1.50704 * 109.46999 * 179.97438 * 7 6 4 9 9 C 1.38639 * 119.74939 * 89.99824 * 8 7 6 10 10 C 1.37620 * 120.24897 * 180.27710 * 9 8 7 11 11 C 1.40715 * 119.74131 * 359.51904 * 10 9 8 12 12 C 1.41399 * 120.24183 * 180.22985 * 11 10 9 13 13 H 1.07996 * 120.00044 * 204.52621 * 12 11 10 14 14 C 1.39950 * 119.99773 * 24.53568 * 12 11 10 15 15 N 1.30821 * 119.99991 * 17.71280 * 14 12 11 16 16 Si 1.86800 * 119.99756 * 197.70913 * 14 12 11 17 17 H 1.48506 * 109.46742 * 59.99979 * 16 14 12 18 18 H 1.48505 * 109.46999 * 179.97438 * 16 14 12 19 19 H 1.48491 * 109.47336 * 300.00007 * 16 14 12 20 20 C 1.40715 * 119.51261 * 0.47567 * 11 10 9 21 21 C 1.37609 * 119.74608 * 359.75586 * 20 11 10 22 22 C 1.50695 * 109.47204 * 184.99895 * 4 3 2 23 23 C 1.38239 * 120.00279 * 279.72907 * 22 4 3 24 24 C 1.38234 * 120.00097 * 179.78527 * 23 22 4 25 25 C 1.38237 * 119.99696 * 0.44222 * 24 23 22 26 26 C 1.38231 * 120.00281 * 359.81127 * 25 24 23 27 27 C 1.38235 * 120.00092 * 359.97438 * 26 25 24 28 28 H 4.44654 * 5.63298 * 179.97438 * 4 1 2 29 29 H 1.08997 * 109.47137 * 181.66302 * 3 2 1 30 30 H 1.09002 * 109.46952 * 61.66523 * 3 2 1 31 31 H 1.00900 * 111.00517 * 151.04734 * 6 4 3 32 32 H 1.08993 * 109.47537 * 59.99882 * 7 6 4 33 33 H 1.09002 * 109.46673 * 299.99281 * 7 6 4 34 34 H 1.08000 * 119.87572 * 359.97438 * 9 8 7 35 35 H 1.07993 * 120.12561 * 179.72165 * 10 9 8 36 36 H 0.97005 * 119.99803 * 180.02562 * 15 14 12 37 37 H 1.08000 * 120.12510 * 179.73128 * 20 11 10 38 38 H 1.08002 * 119.87647 * 179.97438 * 21 20 11 39 39 H 1.08002 * 119.99755 * 0.02562 * 23 22 4 40 40 H 1.07996 * 119.99876 * 180.27040 * 24 23 22 41 41 H 1.08004 * 119.99467 * 179.83167 * 25 24 23 42 42 H 1.07996 * 119.99955 * 180.02562 * 26 25 24 43 43 H 1.07997 * 120.00211 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1564 -0.7564 1.2278 5 1 2.7215 -0.3231 2.1284 6 7 2.7684 -2.1697 1.1278 7 6 1.4083 -2.3799 1.6417 8 6 1.0460 -3.8378 1.5225 9 6 1.3271 -4.7043 2.5676 10 6 1.0059 -6.0387 2.4674 11 6 0.3806 -6.5206 1.3026 12 6 0.0415 -7.8887 1.1903 13 1 -0.0590 -8.3419 0.2152 14 6 -0.1641 -8.6555 2.3429 15 7 -0.3873 -8.0662 3.4894 16 14 -0.1199 -10.5204 2.2442 17 1 1.2119 -10.9586 1.7545 18 1 -0.3642 -11.0933 3.5923 19 1 -1.1714 -10.9916 1.3076 20 6 0.1000 -5.6320 0.2482 21 6 0.4344 -4.3026 0.3684 22 6 4.6582 -0.6513 1.2943 23 6 5.4442 -1.4744 0.5096 24 6 6.8217 -1.3749 0.5674 25 6 7.4134 -0.4587 1.4167 26 6 6.6276 0.3607 2.2053 27 6 5.2500 0.2644 2.1442 28 1 -1.0499 0.0001 0.0003 29 1 3.0089 1.0280 0.0298 30 1 3.0096 -0.4869 -0.9046 31 1 3.4311 -2.7614 1.6061 32 1 0.7045 -1.7824 1.0623 33 1 1.3649 -2.0788 2.6884 34 1 1.8045 -4.3315 3.4618 35 1 1.2299 -6.7127 3.2809 36 1 -0.5295 -8.5977 4.2883 37 1 -0.3757 -5.9921 -0.6520 38 1 0.2204 -3.6188 -0.4398 39 1 4.9818 -2.1924 -0.1515 40 1 7.4356 -2.0149 -0.0489 41 1 8.4898 -0.3829 1.4638 42 1 7.0899 1.0768 2.8685 43 1 4.6360 0.9042 2.7606 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784266142.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:44 Heat of formation + Delta-G solvation = 92.421116 kcal Electronic energy + Delta-G solvation = -23140.862517 eV Core-core repulsion = 19923.485538 eV Total energy + Delta-G solvation = -3217.376980 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.148 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.66841 -37.80618 -36.59250 -33.91942 -32.94510 -31.92209 -30.96170 -29.70905 -29.20341 -28.61779 -26.12677 -23.94907 -23.01434 -22.27744 -20.94591 -20.54746 -19.79427 -17.94397 -17.25478 -17.05142 -15.91670 -15.56448 -15.23275 -14.66712 -14.43312 -14.21392 -14.02941 -13.71016 -13.44726 -13.41934 -12.95492 -12.74729 -12.55161 -12.41070 -12.30714 -11.89993 -11.61721 -11.47630 -11.15791 -11.07721 -11.01716 -10.88195 -10.52332 -10.36781 -10.06493 -9.85364 -9.40531 -9.34851 -9.07578 -8.98212 -8.80209 -8.04825 -7.40623 -7.25333 -6.73573 -4.31734 1.24105 1.34125 2.78257 2.97721 3.03356 3.07221 3.10020 3.13111 3.22023 3.72095 3.94727 4.35771 4.48004 4.72949 4.81714 4.89019 4.93181 5.09545 5.28485 5.39209 5.44337 5.54257 5.68886 5.79087 5.88591 5.91398 5.96501 5.99003 6.09472 6.17938 6.37090 6.37465 6.45441 6.47476 6.49698 6.57049 6.92851 6.98378 7.10655 7.32039 7.40686 7.43154 7.65512 7.73590 7.80952 7.94247 8.09182 8.19932 8.34615 8.67696 8.93144 9.02016 10.21007 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.016458 B = 0.003098 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.891013 B = 9035.113803 C =10103.616459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.169 4.169 3 C 0.003 3.997 4 C 0.130 3.870 5 H 0.051 0.949 6 N -0.673 5.673 7 C 0.108 3.892 8 C -0.210 4.210 9 C -0.096 4.096 10 C -0.166 4.166 11 C 0.113 3.887 12 C -0.464 4.464 13 H 0.076 0.924 14 C 0.076 3.924 15 N -0.794 5.794 16 Si 0.907 3.093 17 H -0.264 1.264 18 H -0.279 1.279 19 H -0.266 1.266 20 C -0.229 4.229 21 C -0.067 4.067 22 C -0.088 4.088 23 C -0.096 4.096 24 C -0.122 4.122 25 C -0.123 4.123 26 C -0.124 4.124 27 C -0.114 4.114 28 H 0.214 0.786 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.342 0.658 32 H 0.082 0.918 33 H 0.015 0.985 34 H 0.081 0.919 35 H 0.116 0.884 36 H 0.280 0.720 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.135 0.865 40 H 0.121 0.879 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.160 14.561 -2.188 17.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.169 4.169 3 C -0.034 4.034 4 C 0.020 3.980 5 H 0.069 0.931 6 N -0.305 5.305 7 C -0.019 4.019 8 C -0.211 4.211 9 C -0.115 4.115 10 C -0.185 4.185 11 C 0.110 3.890 12 C -0.494 4.494 13 H 0.094 0.906 14 C -0.141 4.141 15 N -0.420 5.420 16 Si 0.731 3.269 17 H -0.188 1.188 18 H -0.204 1.204 19 H -0.190 1.190 20 C -0.248 4.248 21 C -0.086 4.086 22 C -0.088 4.088 23 C -0.114 4.114 24 C -0.140 4.140 25 C -0.141 4.141 26 C -0.142 4.142 27 C -0.132 4.132 28 H 0.231 0.769 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.161 0.839 32 H 0.100 0.900 33 H 0.033 0.967 34 H 0.099 0.901 35 H 0.134 0.866 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.153 0.847 40 H 0.139 0.861 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 9.888 14.563 -2.578 17.790 hybrid contribution -0.093 -0.846 1.104 1.394 sum 9.795 13.717 -1.474 16.920 Atomic orbital electron populations 1.24803 0.95943 1.01658 1.00860 1.22864 0.94337 0.99376 1.00329 1.18779 0.84972 1.00142 0.99529 1.20366 0.89725 0.91382 0.96565 0.93144 1.60785 1.04654 1.03061 1.62010 1.20995 0.89278 0.95533 0.96083 1.18891 1.11994 0.93370 0.96875 1.20538 1.00342 0.94324 0.96304 1.21262 1.02995 0.94096 1.00152 1.17607 0.87798 0.92653 0.90911 1.19566 1.42042 0.94351 0.93432 0.90564 1.25902 0.92233 1.01136 0.94840 1.69826 1.33588 1.38149 1.00429 0.86392 0.79938 0.82326 0.78195 1.18837 1.20387 1.19035 1.20969 1.09914 0.93222 1.00742 1.20308 0.97994 0.94846 0.95426 1.19945 0.94901 0.96838 0.97133 1.21192 0.93252 0.98433 0.98516 1.21211 0.95032 0.98671 0.99106 1.21156 0.99672 0.96448 0.96835 1.21075 0.93708 0.99742 0.99719 1.21052 0.94912 0.98564 0.98705 0.76897 0.89873 0.88784 0.83862 0.90012 0.96710 0.90074 0.86641 0.90909 0.89206 0.89595 0.84720 0.86054 0.86384 0.86302 0.86282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.87 17.65 29.55 0.52 -2.35 16 2 C -0.17 -2.34 11.24 -37.12 -0.42 -2.76 16 3 C 0.00 0.04 5.37 -29.51 -0.16 -0.12 16 4 C 0.13 1.66 2.45 -68.87 -0.17 1.49 16 5 H 0.05 0.67 7.66 -51.93 -0.40 0.27 16 6 N -0.67 -10.53 5.64 -109.22 -0.62 -11.15 16 7 C 0.11 1.96 5.37 -4.97 -0.03 1.93 16 8 C -0.21 -4.60 5.42 -104.33 -0.56 -5.16 16 9 C -0.10 -2.26 9.67 -39.66 -0.38 -2.64 16 10 C -0.17 -4.35 8.70 -38.87 -0.34 -4.69 16 11 C 0.11 3.05 5.57 -106.82 -0.60 2.45 16 12 C -0.46 -12.50 9.06 -37.74 -0.34 -12.84 16 13 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 14 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 15 N -0.79 -20.77 10.95 55.55 0.61 -20.17 16 16 Si 0.91 18.85 29.59 -169.99 -5.03 13.82 16 17 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 18 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 19 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 20 C -0.23 -5.73 9.80 -38.88 -0.38 -6.12 16 21 C -0.07 -1.53 9.67 -39.66 -0.38 -1.92 16 22 C -0.09 -1.02 4.72 -104.62 -0.49 -1.52 16 23 C -0.10 -1.11 9.00 -39.58 -0.36 -1.47 16 24 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 25 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 26 C -0.12 -1.19 10.05 -39.59 -0.40 -1.58 16 27 C -0.11 -1.19 9.67 -39.58 -0.38 -1.57 16 28 H 0.21 2.24 7.80 -54.10 -0.42 1.82 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.34 5.52 7.97 -39.29 -0.31 5.21 16 32 H 0.08 1.45 4.07 -51.93 -0.21 1.24 16 33 H 0.01 0.27 8.00 -51.93 -0.42 -0.15 16 34 H 0.08 1.75 8.06 -52.49 -0.42 1.32 16 35 H 0.12 3.14 6.16 -52.49 -0.32 2.81 16 36 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 37 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 38 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 39 H 0.13 1.63 7.71 -52.49 -0.40 1.23 16 40 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 42 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 43 H 0.12 1.08 8.04 -52.49 -0.42 0.66 16 LS Contribution 364.37 15.07 5.49 5.49 Total: -1.00 -28.32 364.37 -11.14 -39.46 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -5.84 Total: 12.76 kcal Atomic # 6 Polarization: -34.47 SS G_CDS: -5.75 Total: -40.22 kcal Atomic # 7 Polarization: -31.30 SS G_CDS: -0.01 Total: -31.31 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.32 -11.14 -39.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784266142.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.884 kcal (2) G-P(sol) polarization free energy of solvation -28.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds