Wall clock time and date at job start Tue Mar 31 2020 08:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47043 * 301.66593 * 3 2 1 5 5 H 1.08996 * 109.46958 * 305.00364 * 4 3 2 6 6 N 1.46900 * 109.47085 * 65.00081 * 4 3 2 7 7 C 1.46906 * 110.99938 * 275.00163 * 6 4 3 8 8 C 1.50704 * 109.46999 * 179.97438 * 7 6 4 9 9 C 1.38639 * 119.74939 * 89.99824 * 8 7 6 10 10 C 1.37620 * 120.24897 * 180.27710 * 9 8 7 11 11 C 1.40715 * 119.74131 * 359.51904 * 10 9 8 12 12 C 1.41399 * 120.24183 * 180.22985 * 11 10 9 13 13 H 1.07996 * 120.00044 * 204.52621 * 12 11 10 14 14 C 1.39950 * 119.99773 * 24.53568 * 12 11 10 15 15 N 1.30821 * 119.99991 * 17.71280 * 14 12 11 16 16 Si 1.86800 * 119.99756 * 197.70913 * 14 12 11 17 17 H 1.48506 * 109.46742 * 59.99979 * 16 14 12 18 18 H 1.48505 * 109.46999 * 179.97438 * 16 14 12 19 19 H 1.48491 * 109.47336 * 300.00007 * 16 14 12 20 20 C 1.40715 * 119.51261 * 0.47567 * 11 10 9 21 21 C 1.37609 * 119.74608 * 359.75586 * 20 11 10 22 22 C 1.50695 * 109.47204 * 184.99895 * 4 3 2 23 23 C 1.38239 * 120.00279 * 279.72907 * 22 4 3 24 24 C 1.38234 * 120.00097 * 179.78527 * 23 22 4 25 25 C 1.38237 * 119.99696 * 0.44222 * 24 23 22 26 26 C 1.38231 * 120.00281 * 359.81127 * 25 24 23 27 27 C 1.38235 * 120.00092 * 359.97438 * 26 25 24 28 28 H 4.44654 * 5.63298 * 179.97438 * 4 1 2 29 29 H 1.08997 * 109.47137 * 181.66302 * 3 2 1 30 30 H 1.09002 * 109.46952 * 61.66523 * 3 2 1 31 31 H 1.00900 * 111.00517 * 151.04734 * 6 4 3 32 32 H 1.08993 * 109.47537 * 59.99882 * 7 6 4 33 33 H 1.09002 * 109.46673 * 299.99281 * 7 6 4 34 34 H 1.08000 * 119.87572 * 359.97438 * 9 8 7 35 35 H 1.07993 * 120.12561 * 179.72165 * 10 9 8 36 36 H 0.97005 * 119.99803 * 180.02562 * 15 14 12 37 37 H 1.08000 * 120.12510 * 179.73128 * 20 11 10 38 38 H 1.08002 * 119.87647 * 179.97438 * 21 20 11 39 39 H 1.08002 * 119.99755 * 0.02562 * 23 22 4 40 40 H 1.07996 * 119.99876 * 180.27040 * 24 23 22 41 41 H 1.08004 * 119.99467 * 179.83167 * 25 24 23 42 42 H 1.07996 * 119.99955 * 180.02562 * 26 25 24 43 43 H 1.07997 * 120.00211 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1564 -0.7564 1.2278 5 1 2.7215 -0.3231 2.1284 6 7 2.7684 -2.1697 1.1278 7 6 1.4083 -2.3799 1.6417 8 6 1.0460 -3.8378 1.5225 9 6 1.3271 -4.7043 2.5676 10 6 1.0059 -6.0387 2.4674 11 6 0.3806 -6.5206 1.3026 12 6 0.0415 -7.8887 1.1903 13 1 -0.0590 -8.3419 0.2152 14 6 -0.1641 -8.6555 2.3429 15 7 -0.3873 -8.0662 3.4894 16 14 -0.1199 -10.5204 2.2442 17 1 1.2119 -10.9586 1.7545 18 1 -0.3642 -11.0933 3.5923 19 1 -1.1714 -10.9916 1.3076 20 6 0.1000 -5.6320 0.2482 21 6 0.4344 -4.3026 0.3684 22 6 4.6582 -0.6513 1.2943 23 6 5.4442 -1.4744 0.5096 24 6 6.8217 -1.3749 0.5674 25 6 7.4134 -0.4587 1.4167 26 6 6.6276 0.3607 2.2053 27 6 5.2500 0.2644 2.1442 28 1 -1.0499 0.0001 0.0003 29 1 3.0089 1.0280 0.0298 30 1 3.0096 -0.4869 -0.9046 31 1 3.4311 -2.7614 1.6061 32 1 0.7045 -1.7824 1.0623 33 1 1.3649 -2.0788 2.6884 34 1 1.8045 -4.3315 3.4618 35 1 1.2299 -6.7127 3.2809 36 1 -0.5295 -8.5977 4.2883 37 1 -0.3757 -5.9921 -0.6520 38 1 0.2204 -3.6188 -0.4398 39 1 4.9818 -2.1924 -0.1515 40 1 7.4356 -2.0149 -0.0489 41 1 8.4898 -0.3829 1.4638 42 1 7.0899 1.0768 2.8685 43 1 4.6360 0.9042 2.7606 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784266142.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:43 Heat of formation + Delta-G solvation = 80.293316 kcal Electronic energy + Delta-G solvation = -23141.388418 eV Core-core repulsion = 19923.485538 eV Total energy + Delta-G solvation = -3217.902880 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.56822 -39.51623 -37.81333 -35.70267 -34.11683 -33.21450 -31.75842 -31.28545 -31.01990 -29.72346 -27.79075 -25.26544 -24.17766 -23.25313 -22.86770 -21.60105 -21.45574 -19.20819 -18.93359 -17.97882 -17.19957 -16.86455 -16.49438 -15.93332 -15.80084 -15.54805 -15.20653 -15.10679 -15.00115 -14.36552 -14.20100 -14.00525 -13.81377 -13.73459 -13.59751 -13.31442 -13.28622 -12.95222 -12.71664 -12.60767 -12.35749 -12.18969 -11.84810 -11.81322 -11.45507 -11.25593 -11.10856 -10.99413 -10.69976 -9.76438 -9.63070 -9.40637 -9.27607 -9.15636 -8.63291 -6.32488 0.44279 0.55866 0.96015 1.16826 1.37342 1.48535 1.53377 1.94485 2.00339 2.20768 2.69626 2.92494 3.33713 3.49100 3.80928 3.92124 4.06341 4.22362 4.28117 4.31346 4.35757 4.36620 4.46614 4.62717 4.66104 4.68316 4.73691 4.79381 4.93562 5.04220 5.05737 5.11648 5.17004 5.23431 5.26182 5.38824 5.48809 5.60532 5.68265 5.69259 5.72194 5.97416 6.11157 6.14499 6.20498 6.26658 6.40802 6.49181 6.71348 6.77535 6.95358 7.05445 8.33658 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.016458 B = 0.003098 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.891013 B = 9035.113803 C =10103.616459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.193 4.193 3 C 0.005 3.995 4 C 0.137 3.863 5 H 0.050 0.950 6 N -0.675 5.675 7 C 0.117 3.883 8 C -0.196 4.196 9 C -0.099 4.099 10 C -0.188 4.188 11 C 0.081 3.919 12 C -0.504 4.504 13 H 0.073 0.927 14 C 0.035 3.965 15 N -0.827 5.827 16 Si 0.982 3.018 17 H -0.261 1.261 18 H -0.267 1.267 19 H -0.259 1.259 20 C -0.244 4.244 21 C -0.069 4.069 22 C -0.098 4.098 23 C -0.111 4.111 24 C -0.130 4.130 25 C -0.124 4.124 26 C -0.126 4.126 27 C -0.120 4.120 28 H 0.234 0.766 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.339 0.661 32 H 0.089 0.911 33 H 0.017 0.983 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.287 0.713 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.122 0.878 40 H 0.134 0.866 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.345 15.849 -2.016 19.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.193 4.193 3 C -0.032 4.032 4 C 0.027 3.973 5 H 0.068 0.932 6 N -0.307 5.307 7 C -0.011 4.011 8 C -0.198 4.198 9 C -0.118 4.118 10 C -0.208 4.208 11 C 0.079 3.921 12 C -0.533 4.533 13 H 0.092 0.908 14 C -0.179 4.179 15 N -0.453 5.453 16 Si 0.802 3.198 17 H -0.185 1.185 18 H -0.191 1.191 19 H -0.184 1.184 20 C -0.264 4.264 21 C -0.087 4.087 22 C -0.099 4.099 23 C -0.129 4.129 24 C -0.148 4.148 25 C -0.142 4.142 26 C -0.144 4.144 27 C -0.139 4.139 28 H 0.251 0.749 29 H 0.123 0.877 30 H 0.108 0.892 31 H 0.157 0.843 32 H 0.107 0.893 33 H 0.035 0.965 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.098 0.902 37 H 0.112 0.888 38 H 0.125 0.875 39 H 0.140 0.860 40 H 0.152 0.848 41 H 0.160 0.840 42 H 0.161 0.839 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 11.076 15.876 -2.415 19.508 hybrid contribution -0.402 -1.057 1.035 1.533 sum 10.674 14.819 -1.380 18.315 Atomic orbital electron populations 1.25477 0.96843 1.01243 1.00312 1.23382 0.95197 0.99834 1.00869 1.18833 0.84234 1.01239 0.98931 1.20331 0.90788 0.89291 0.96848 0.93206 1.60681 1.03286 1.05044 1.61660 1.20881 0.90952 0.92684 0.96578 1.19295 1.09624 0.95240 0.95608 1.20763 0.99993 0.93575 0.97490 1.21227 1.04496 0.95156 0.99880 1.17939 0.88819 0.93484 0.91893 1.19814 1.44244 0.95160 0.94120 0.90847 1.26754 0.91126 1.06036 0.94003 1.69879 1.34030 1.40159 1.01192 0.85265 0.79982 0.75820 0.78704 1.18536 1.19100 1.18366 1.21159 1.10429 0.94137 1.00630 1.20555 0.97478 0.94335 0.96379 1.19850 0.93993 0.97867 0.98164 1.21176 0.94073 0.98711 0.98938 1.21433 0.94643 0.99197 0.99565 1.21492 1.01046 0.95659 0.96008 1.21409 0.93377 0.99883 0.99690 1.21256 0.95721 0.98415 0.98465 0.74930 0.87713 0.89160 0.84260 0.89271 0.96481 0.88261 0.88357 0.90195 0.88838 0.87483 0.85998 0.84769 0.84025 0.83888 0.84992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -5.53 17.65 74.32 1.31 -4.22 16 2 C -0.19 -5.04 11.24 31.13 0.35 -4.69 16 3 C 0.00 0.11 5.37 28.79 0.15 0.26 16 4 C 0.14 3.32 2.45 44.17 0.11 3.42 16 5 H 0.05 1.23 7.66 -2.39 -0.02 1.21 16 6 N -0.68 -20.46 5.64 -499.46 -2.82 -23.28 16 7 C 0.12 4.07 5.37 85.56 0.46 4.53 16 8 C -0.20 -8.50 5.42 -19.67 -0.11 -8.61 16 9 C -0.10 -4.70 9.67 22.22 0.21 -4.49 16 10 C -0.19 -10.20 8.70 22.73 0.20 -10.00 16 11 C 0.08 4.53 5.57 -21.29 -0.12 4.41 16 12 C -0.50 -28.10 9.06 23.46 0.21 -27.88 16 13 H 0.07 3.96 7.91 -2.91 -0.02 3.93 16 14 C 0.04 1.83 5.14 85.26 0.44 2.27 16 15 N -0.83 -44.33 10.95 21.83 0.24 -44.09 16 16 Si 0.98 39.09 29.59 68.60 2.03 41.12 16 17 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 18 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 19 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 20 C -0.24 -12.49 9.80 22.73 0.22 -12.27 16 21 C -0.07 -3.14 9.67 22.22 0.21 -2.92 16 22 C -0.10 -2.15 4.72 -19.87 -0.09 -2.25 16 23 C -0.11 -2.48 9.00 22.27 0.20 -2.28 16 24 C -0.13 -2.48 10.05 22.27 0.22 -2.26 16 25 C -0.12 -2.03 10.05 22.27 0.22 -1.81 16 26 C -0.13 -2.04 10.05 22.27 0.22 -1.81 16 27 C -0.12 -2.24 9.67 22.27 0.22 -2.03 16 28 H 0.23 4.44 7.80 -4.42 -0.03 4.40 16 29 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.34 10.72 7.97 -89.69 -0.72 10.01 16 32 H 0.09 3.02 4.07 -2.39 -0.01 3.01 16 33 H 0.02 0.59 8.00 -2.39 -0.02 0.57 16 34 H 0.10 4.25 8.06 -2.91 -0.02 4.22 16 35 H 0.10 5.58 6.16 -2.91 -0.02 5.56 16 36 H 0.29 13.94 8.30 -92.70 -0.77 13.17 16 37 H 0.09 4.57 8.06 -2.91 -0.02 4.55 16 38 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 39 H 0.12 2.97 7.71 -2.91 -0.02 2.95 16 40 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 41 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 42 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 43 H 0.13 2.05 8.04 -2.91 -0.02 2.03 16 Total: -1.00 -62.10 364.37 4.39 -57.71 By element: Atomic # 1 Polarization: 40.86 SS G_CDS: 0.29 Total: 41.15 kcal Atomic # 6 Polarization: -77.26 SS G_CDS: 4.65 Total: -72.61 kcal Atomic # 7 Polarization: -64.79 SS G_CDS: -2.58 Total: -67.37 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.12 kcal Total: -62.10 4.39 -57.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784266142.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.003 kcal (2) G-P(sol) polarization free energy of solvation -62.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds