Wall clock time and date at job start Tue Mar 31 2020 08:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47104 * 2 1 4 4 C 1.53001 * 109.46984 * 119.99562 * 2 1 3 5 5 N 1.46501 * 109.47004 * 174.83200 * 4 2 1 6 6 C 1.46499 * 120.00377 * 274.98652 * 5 4 2 7 7 C 1.50701 * 109.47116 * 273.46071 * 6 5 4 8 8 H 1.08005 * 120.00179 * 359.97438 * 7 6 5 9 9 C 1.37882 * 120.00168 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99800 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00063 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.47113 * 59.99903 * 11 9 7 13 13 H 1.48496 * 109.47094 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47413 * 299.99780 * 11 9 7 15 15 C 1.34781 * 119.99710 * 94.98908 * 5 4 2 16 16 O 1.21279 * 119.99807 * 5.36392 * 15 5 4 17 17 C 1.50703 * 119.99964 * 185.37011 * 15 5 4 18 18 H 1.08999 * 112.83016 * 36.31769 * 17 15 5 19 19 C 1.52249 * 113.66214 * 167.50776 * 17 15 5 20 20 C 1.50565 * 87.24086 * 114.59736 * 19 17 15 21 21 C 1.38828 * 147.27267 * 180.02562 * 20 19 17 22 22 C 1.38027 * 120.12314 * 179.97438 * 21 20 19 23 23 C 1.38455 * 119.95773 * 0.26508 * 22 21 20 24 24 F 1.35102 * 120.03928 * 179.74950 * 23 22 21 25 25 C 1.38295 * 119.92478 * 359.48562 * 23 22 21 26 26 C 1.37737 * 92.75980 * 359.97438 * 20 19 17 27 27 H 1.09004 * 109.47700 * 299.99837 * 1 2 3 28 28 H 1.08997 * 109.47180 * 60.00580 * 1 2 3 29 29 H 1.09003 * 109.47342 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47092 * 239.99558 * 2 1 3 31 31 H 1.08993 * 109.47515 * 65.96189 * 3 2 1 32 32 H 1.09001 * 109.47151 * 185.96241 * 3 2 1 33 33 H 1.09000 * 109.46863 * 305.95671 * 3 2 1 34 34 H 1.09003 * 109.47339 * 54.83872 * 4 2 1 35 35 H 1.08997 * 109.47410 * 294.83833 * 4 2 1 36 36 H 1.08998 * 109.46988 * 33.45523 * 6 5 4 37 37 H 1.08995 * 109.47092 * 153.45953 * 6 5 4 38 38 H 0.96995 * 119.99943 * 180.02562 * 10 9 7 39 39 H 1.09002 * 113.59051 * 0.02562 * 19 17 15 40 40 H 1.08999 * 113.58889 * 229.18679 * 19 17 15 41 41 H 1.07997 * 119.93718 * 359.97438 * 21 20 19 42 42 H 1.07998 * 120.02298 * 179.97438 * 22 21 20 43 43 H 1.07997 * 119.96632 * 180.22820 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.4996 -0.8299 1.1887 6 6 4.1221 -1.9411 0.4649 7 6 4.2492 -3.1298 1.3825 8 1 3.9015 -3.0640 2.4029 9 6 4.8103 -4.3011 0.9196 10 7 5.2342 -4.3811 -0.3228 11 14 4.9686 -5.7743 2.0571 12 1 3.6207 -6.1835 2.5274 13 1 5.5994 -6.9007 1.3234 14 1 5.8107 -5.4100 3.2246 15 6 4.2699 0.0925 1.7990 16 8 3.7578 0.9564 2.4790 17 6 5.7675 0.0505 1.6364 18 1 6.0760 -0.2625 0.6389 19 6 6.4708 1.3095 2.1247 20 6 7.1097 0.4534 3.1858 21 6 7.9674 0.3902 4.2755 22 6 8.1843 -0.8122 4.9176 23 6 7.5496 -1.9588 4.4709 24 9 7.7646 -3.1376 5.0950 25 6 6.6911 -1.8951 3.3886 26 6 6.4730 -0.6855 2.7444 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8932 -0.5139 -0.8899 31 1 1.7664 1.9246 0.9385 32 1 3.1247 1.4444 -0.1068 33 1 1.5921 1.9862 -0.8319 34 1 1.6030 -1.7187 1.2968 35 1 1.7540 -0.1567 2.1368 36 1 3.5038 -2.2082 -0.3921 37 1 5.1114 -1.6410 0.1198 38 1 5.6286 -5.2052 -0.6486 39 1 5.7907 2.0624 2.5231 40 1 7.1822 1.7179 1.4069 41 1 8.4660 1.2836 4.6215 42 1 8.8522 -0.8596 5.7649 43 1 6.1928 -2.7883 3.0419 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793245216.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:09 Heat of formation + Delta-G solvation = -30.701795 kcal Electronic energy + Delta-G solvation = -25858.732476 eV Core-core repulsion = 22205.247262 eV Total energy + Delta-G solvation = -3653.485214 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.52434 -40.77395 -38.67801 -36.08974 -34.62962 -34.09443 -32.34431 -30.45056 -27.74015 -27.37964 -26.82604 -26.02696 -24.13655 -23.03622 -21.99512 -20.59699 -19.66089 -18.28319 -17.09802 -16.80919 -16.40781 -16.14991 -15.57396 -15.20166 -14.81408 -14.66219 -14.49603 -14.30478 -13.84568 -13.62620 -13.22560 -13.12346 -12.54890 -12.51211 -12.17515 -12.06089 -11.94770 -11.68137 -11.57859 -11.38377 -11.31097 -11.01916 -10.92740 -10.87927 -10.68141 -10.58537 -10.34711 -10.23709 -10.07256 -9.74558 -9.30625 -8.63044 -8.48466 -8.13742 -7.73258 -6.22429 -4.28816 1.41398 1.54555 3.19201 3.22498 3.27682 3.32642 3.76338 3.96278 4.29703 4.37505 4.52719 4.78518 4.95197 5.10618 5.19920 5.25397 5.28431 5.30227 5.47843 5.56525 5.62358 5.86014 5.89828 5.97051 5.99258 6.02180 6.06703 6.13034 6.25179 6.29744 6.31849 6.34740 6.38297 6.45415 6.51361 6.60095 6.69691 6.79072 7.03679 7.12814 7.22470 7.49245 7.72179 8.01721 8.28728 8.73877 8.94067 9.37926 10.84221 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.010385 B = 0.006987 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2695.552772 B = 4006.371479 C = 6079.556771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.112 4.112 3 C -0.136 4.136 4 C 0.122 3.878 5 N -0.588 5.588 6 C 0.236 3.764 7 C -0.535 4.535 8 H 0.060 0.940 9 C 0.069 3.931 10 N -0.888 5.888 11 Si 0.883 3.117 12 H -0.275 1.275 13 H -0.285 1.285 14 H -0.270 1.270 15 C 0.534 3.466 16 O -0.565 6.565 17 C -0.065 4.065 18 H 0.123 0.877 19 C -0.057 4.057 20 C -0.136 4.136 21 C -0.077 4.077 22 C -0.154 4.154 23 C 0.089 3.911 24 F -0.142 7.142 25 C -0.110 4.110 26 C -0.061 4.061 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.036 0.964 37 H 0.040 0.960 38 H 0.266 0.734 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.125 0.875 42 H 0.133 0.867 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.084 9.132 2.414 9.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 C -0.193 4.193 4 C -0.001 4.001 5 N -0.317 5.317 6 C 0.116 3.884 7 C -0.573 4.573 8 H 0.078 0.922 9 C -0.134 4.134 10 N -0.526 5.526 11 Si 0.710 3.290 12 H -0.200 1.200 13 H -0.210 1.210 14 H -0.196 1.196 15 C 0.321 3.679 16 O -0.445 6.445 17 C -0.086 4.086 18 H 0.140 0.860 19 C -0.094 4.094 20 C -0.137 4.137 21 C -0.095 4.095 22 C -0.173 4.173 23 C 0.070 3.930 24 F -0.120 7.120 25 C -0.129 4.129 26 C -0.062 4.062 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.076 0.924 39 H 0.124 0.876 40 H 0.111 0.889 41 H 0.143 0.857 42 H 0.151 0.849 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.907 9.358 2.642 9.766 hybrid contribution 0.254 -1.574 0.594 1.701 sum 1.161 7.784 3.236 8.510 Atomic orbital electron populations 1.21744 0.95217 1.01614 1.01341 1.21496 0.95340 0.96820 0.99539 1.21744 1.00847 0.95665 1.01079 1.21392 0.80730 1.00624 0.97353 1.48146 1.05692 1.26015 1.51823 1.19464 0.93857 0.82945 0.92104 1.21391 1.41051 0.96628 0.98247 0.92153 1.24878 0.95062 0.98417 0.95084 1.69889 1.40206 1.27735 1.14790 0.86778 0.78796 0.82292 0.81112 1.20011 1.20999 1.19562 1.19739 0.87797 0.81230 0.79104 1.90582 1.74821 1.38361 1.40775 1.21157 0.93074 0.94751 0.99585 0.85981 1.21426 0.97436 0.96368 0.94178 1.21944 0.97492 0.97716 0.96509 1.20070 0.97964 0.96946 0.94522 1.20870 1.02657 0.91597 1.02134 1.17405 0.99857 0.81330 0.94446 1.91482 1.93688 1.45509 1.81365 1.20854 0.97725 1.00152 0.94124 1.20908 0.96561 0.92576 0.96164 0.92857 0.92944 0.92631 0.90980 0.92452 0.93132 0.93740 0.90579 0.90724 0.94639 0.94264 0.92420 0.87565 0.88896 0.85702 0.84913 0.82958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.19 37.15 0.34 -1.44 16 2 C -0.11 -1.72 3.12 -90.62 -0.28 -2.00 16 3 C -0.14 -2.03 8.14 37.16 0.30 -1.73 16 4 C 0.12 2.20 4.99 -4.04 -0.02 2.18 16 5 N -0.59 -11.81 2.28 -175.06 -0.40 -12.20 16 6 C 0.24 5.32 5.13 -5.19 -0.03 5.30 16 7 C -0.53 -13.31 8.00 -34.44 -0.28 -13.58 16 8 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 9 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 10 N -0.89 -23.78 13.29 55.43 0.74 -23.04 16 11 Si 0.88 20.42 29.54 -169.99 -5.02 15.40 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 15 C 0.53 10.60 5.80 -10.98 -0.06 10.53 16 16 O -0.56 -11.95 14.58 5.56 0.08 -11.87 16 17 C -0.06 -1.16 3.31 -93.66 -0.31 -1.47 16 18 H 0.12 2.13 6.48 -51.93 -0.34 1.79 16 19 C -0.06 -0.84 7.68 -28.62 -0.22 -1.06 16 20 C -0.14 -2.21 7.42 -104.94 -0.78 -2.99 16 21 C -0.08 -1.10 10.06 -39.44 -0.40 -1.49 16 22 C -0.15 -2.29 10.02 -39.58 -0.40 -2.69 16 23 C 0.09 1.61 7.30 -39.48 -0.29 1.32 16 24 F -0.14 -2.65 17.27 2.25 0.04 -2.61 16 25 C -0.11 -2.21 10.04 -39.36 -0.40 -2.61 16 26 C -0.06 -1.16 6.90 -104.96 -0.72 -1.88 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 1.17 8.10 -51.93 -0.42 0.74 16 31 H 0.06 0.90 8.07 -51.93 -0.42 0.48 16 32 H 0.05 0.82 7.02 -51.93 -0.36 0.45 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 35 H 0.07 1.38 7.22 -51.93 -0.37 1.00 16 36 H 0.04 0.85 8.06 -51.93 -0.42 0.43 16 37 H 0.04 0.91 5.79 -51.93 -0.30 0.61 16 38 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 39 H 0.11 1.61 7.09 -51.93 -0.37 1.24 16 40 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 42 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 43 H 0.15 3.43 6.61 -52.49 -0.35 3.08 16 LS Contribution 356.33 15.07 5.37 5.37 Total: -1.00 -27.71 356.33 -9.10 -36.81 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -6.28 Total: 4.09 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -3.63 Total: -11.95 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.34 Total: -35.24 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.08 Total: -11.87 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.04 Total: -2.61 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -27.71 -9.10 -36.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793245216.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.105 kcal (2) G-P(sol) polarization free energy of solvation -27.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds