Wall clock time and date at job start Tue Mar 31 2020 08:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47104 * 2 1 4 4 C 1.53001 * 109.46984 * 119.99562 * 2 1 3 5 5 N 1.46501 * 109.47004 * 174.83200 * 4 2 1 6 6 C 1.46499 * 120.00377 * 274.98652 * 5 4 2 7 7 C 1.50701 * 109.47116 * 273.46071 * 6 5 4 8 8 H 1.08005 * 120.00179 * 359.97438 * 7 6 5 9 9 C 1.37882 * 120.00168 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99800 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00063 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.47113 * 59.99903 * 11 9 7 13 13 H 1.48496 * 109.47094 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47413 * 299.99780 * 11 9 7 15 15 C 1.34781 * 119.99710 * 94.98908 * 5 4 2 16 16 O 1.21279 * 119.99807 * 5.36392 * 15 5 4 17 17 C 1.50703 * 119.99964 * 185.37011 * 15 5 4 18 18 H 1.08999 * 112.83016 * 36.31769 * 17 15 5 19 19 C 1.52249 * 113.66214 * 167.50776 * 17 15 5 20 20 C 1.50565 * 87.24086 * 114.59736 * 19 17 15 21 21 C 1.38828 * 147.27267 * 180.02562 * 20 19 17 22 22 C 1.38027 * 120.12314 * 179.97438 * 21 20 19 23 23 C 1.38455 * 119.95773 * 0.26508 * 22 21 20 24 24 F 1.35102 * 120.03928 * 179.74950 * 23 22 21 25 25 C 1.38295 * 119.92478 * 359.48562 * 23 22 21 26 26 C 1.37737 * 92.75980 * 359.97438 * 20 19 17 27 27 H 1.09004 * 109.47700 * 299.99837 * 1 2 3 28 28 H 1.08997 * 109.47180 * 60.00580 * 1 2 3 29 29 H 1.09003 * 109.47342 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47092 * 239.99558 * 2 1 3 31 31 H 1.08993 * 109.47515 * 65.96189 * 3 2 1 32 32 H 1.09001 * 109.47151 * 185.96241 * 3 2 1 33 33 H 1.09000 * 109.46863 * 305.95671 * 3 2 1 34 34 H 1.09003 * 109.47339 * 54.83872 * 4 2 1 35 35 H 1.08997 * 109.47410 * 294.83833 * 4 2 1 36 36 H 1.08998 * 109.46988 * 33.45523 * 6 5 4 37 37 H 1.08995 * 109.47092 * 153.45953 * 6 5 4 38 38 H 0.96995 * 119.99943 * 180.02562 * 10 9 7 39 39 H 1.09002 * 113.59051 * 0.02562 * 19 17 15 40 40 H 1.08999 * 113.58889 * 229.18679 * 19 17 15 41 41 H 1.07997 * 119.93718 * 359.97438 * 21 20 19 42 42 H 1.07998 * 120.02298 * 179.97438 * 22 21 20 43 43 H 1.07997 * 119.96632 * 180.22820 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.4996 -0.8299 1.1887 6 6 4.1221 -1.9411 0.4649 7 6 4.2492 -3.1298 1.3825 8 1 3.9015 -3.0640 2.4029 9 6 4.8103 -4.3011 0.9196 10 7 5.2342 -4.3811 -0.3228 11 14 4.9686 -5.7743 2.0571 12 1 3.6207 -6.1835 2.5274 13 1 5.5994 -6.9007 1.3234 14 1 5.8107 -5.4100 3.2246 15 6 4.2699 0.0925 1.7990 16 8 3.7578 0.9564 2.4790 17 6 5.7675 0.0505 1.6364 18 1 6.0760 -0.2625 0.6389 19 6 6.4708 1.3095 2.1247 20 6 7.1097 0.4534 3.1858 21 6 7.9674 0.3902 4.2755 22 6 8.1843 -0.8122 4.9176 23 6 7.5496 -1.9588 4.4709 24 9 7.7646 -3.1376 5.0950 25 6 6.6911 -1.8951 3.3886 26 6 6.4730 -0.6855 2.7444 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8932 -0.5139 -0.8899 31 1 1.7664 1.9246 0.9385 32 1 3.1247 1.4444 -0.1068 33 1 1.5921 1.9862 -0.8319 34 1 1.6030 -1.7187 1.2968 35 1 1.7540 -0.1567 2.1368 36 1 3.5038 -2.2082 -0.3921 37 1 5.1114 -1.6410 0.1198 38 1 5.6286 -5.2052 -0.6486 39 1 5.7907 2.0624 2.5231 40 1 7.1822 1.7179 1.4069 41 1 8.4660 1.2836 4.6215 42 1 8.8522 -0.8596 5.7649 43 1 6.1928 -2.7883 3.0419 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793245216.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:08 Heat of formation + Delta-G solvation = -42.701439 kcal Electronic energy + Delta-G solvation = -25859.252820 eV Core-core repulsion = 22205.247262 eV Total energy + Delta-G solvation = -3654.005558 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.94078 -42.16232 -40.16195 -37.53952 -36.05022 -35.65463 -34.18803 -31.76636 -29.40710 -28.92985 -27.99447 -27.38530 -25.55697 -24.84371 -23.34324 -21.91697 -20.96079 -19.84035 -18.72840 -18.37675 -18.06837 -17.58648 -17.10373 -16.65414 -16.47114 -16.11117 -16.05660 -15.61239 -15.18371 -14.99312 -14.51609 -14.46650 -14.38669 -13.81830 -13.69137 -13.53589 -13.41508 -13.09479 -12.93866 -12.86766 -12.77001 -12.60778 -12.44692 -12.28066 -12.20047 -12.11375 -11.83056 -11.69233 -11.56876 -11.45155 -10.86667 -10.60485 -9.87825 -9.46249 -9.41460 -8.24258 -6.34860 0.10487 0.22741 1.32313 1.35794 1.40666 1.64852 2.24153 2.38200 2.60221 3.01956 3.06897 3.27308 3.52746 3.65362 3.73328 3.97638 4.05000 4.07449 4.20777 4.24781 4.40337 4.61329 4.65666 4.67901 4.73834 4.81721 4.83988 4.90329 4.92462 5.02117 5.02806 5.06569 5.11624 5.17470 5.20891 5.21513 5.22624 5.41796 5.47628 5.62253 5.69708 5.84750 5.92423 6.04306 6.55341 6.78924 7.26840 7.38462 8.81063 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.010385 B = 0.006987 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2695.552772 B = 4006.371479 C = 6079.556771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 C -0.128 4.128 4 C 0.119 3.881 5 N -0.593 5.593 6 C 0.254 3.746 7 C -0.531 4.531 8 H 0.044 0.956 9 C 0.034 3.966 10 N -0.913 5.913 11 Si 0.929 3.071 12 H -0.271 1.271 13 H -0.278 1.278 14 H -0.277 1.277 15 C 0.532 3.468 16 O -0.578 6.578 17 C -0.075 4.075 18 H 0.119 0.881 19 C -0.038 4.038 20 C -0.128 4.128 21 C -0.064 4.064 22 C -0.138 4.138 23 C 0.068 3.932 24 F -0.152 7.152 25 C -0.141 4.141 26 C -0.098 4.098 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.032 0.968 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.022 0.978 37 H 0.033 0.967 38 H 0.267 0.733 39 H 0.106 0.894 40 H 0.130 0.870 41 H 0.173 0.827 42 H 0.171 0.829 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.884 11.202 3.129 11.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.127 4.127 3 C -0.186 4.186 4 C -0.004 4.004 5 N -0.321 5.321 6 C 0.133 3.867 7 C -0.570 4.570 8 H 0.063 0.937 9 C -0.167 4.167 10 N -0.552 5.552 11 Si 0.755 3.245 12 H -0.196 1.196 13 H -0.204 1.204 14 H -0.203 1.203 15 C 0.321 3.679 16 O -0.460 6.460 17 C -0.096 4.096 18 H 0.137 0.863 19 C -0.075 4.075 20 C -0.128 4.128 21 C -0.082 4.082 22 C -0.156 4.156 23 C 0.049 3.951 24 F -0.131 7.131 25 C -0.160 4.160 26 C -0.099 4.099 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.040 0.960 37 H 0.051 0.949 38 H 0.076 0.924 39 H 0.125 0.875 40 H 0.148 0.852 41 H 0.190 0.810 42 H 0.188 0.812 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.690 11.429 3.360 12.032 hybrid contribution 0.003 -2.189 0.421 2.230 sum 1.693 9.240 3.781 10.126 Atomic orbital electron populations 1.21705 0.92800 1.02174 1.02631 1.21443 0.97301 0.96588 0.97334 1.21666 0.99823 0.95408 1.01656 1.21522 0.79679 1.00428 0.98731 1.48140 1.06664 1.25556 1.51774 1.19074 0.93341 0.83006 0.91284 1.21468 1.40266 0.97550 0.97667 0.93744 1.25376 0.95026 1.00308 0.95999 1.69952 1.41190 1.28272 1.15804 0.86054 0.78655 0.80196 0.79581 1.19626 1.20353 1.20266 1.20098 0.88745 0.80666 0.78435 1.90557 1.75411 1.38789 1.41288 1.21299 0.91722 0.97045 0.99539 0.86312 1.21411 0.97343 0.94602 0.94132 1.22253 0.97109 0.96505 0.96982 1.20582 0.96492 0.98223 0.92853 1.21295 1.01576 0.90266 1.02449 1.17675 1.00671 0.82239 0.94504 1.91447 1.93805 1.46354 1.81446 1.20737 0.99603 0.99499 0.96169 1.21110 0.98248 0.93244 0.97302 0.92216 0.90963 0.92504 0.92012 0.93207 0.94854 0.91275 0.91573 0.91263 0.96009 0.94914 0.92369 0.87544 0.85218 0.81007 0.81185 0.86771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 9.19 71.98 0.66 -2.56 16 2 C -0.11 -3.25 3.12 -10.80 -0.03 -3.28 16 3 C -0.13 -3.72 8.14 71.98 0.59 -3.13 16 4 C 0.12 4.40 4.99 86.38 0.43 4.83 16 5 N -0.59 -24.61 2.28 -826.16 -1.88 -26.49 16 6 C 0.25 11.94 5.13 85.63 0.44 12.38 16 7 C -0.53 -27.58 8.00 25.60 0.20 -27.38 16 8 H 0.04 2.42 7.81 -2.91 -0.02 2.39 16 9 C 0.03 1.79 5.46 84.66 0.46 2.26 16 10 N -0.91 -50.15 13.29 21.45 0.28 -49.86 16 11 Si 0.93 43.18 29.54 68.60 2.03 45.21 16 12 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 13 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 14 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 15 C 0.53 21.47 5.80 87.66 0.51 21.98 16 16 O -0.58 -24.53 14.58 -3.03 -0.04 -24.57 16 17 C -0.08 -2.70 3.31 -12.76 -0.04 -2.74 16 18 H 0.12 4.24 6.48 -2.39 -0.02 4.22 16 19 C -0.04 -1.04 7.68 29.37 0.23 -0.81 16 20 C -0.13 -3.85 7.42 -20.07 -0.15 -4.00 16 21 C -0.06 -1.56 10.06 22.36 0.22 -1.34 16 22 C -0.14 -3.68 10.02 22.27 0.22 -3.46 16 23 C 0.07 2.45 7.30 22.34 0.16 2.62 16 24 F -0.15 -5.72 17.27 44.97 0.78 -4.95 16 25 C -0.14 -5.89 10.04 22.41 0.22 -5.66 16 26 C -0.10 -3.74 6.90 -20.09 -0.14 -3.88 16 27 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.06 2.00 8.10 -2.39 -0.02 1.98 16 31 H 0.05 1.51 8.07 -2.39 -0.02 1.49 16 32 H 0.03 1.06 7.02 -2.39 -0.02 1.04 16 33 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.07 2.52 8.11 -2.39 -0.02 2.50 16 35 H 0.07 2.61 7.22 -2.39 -0.02 2.59 16 36 H 0.02 1.08 8.06 -2.39 -0.02 1.06 16 37 H 0.03 1.59 5.79 -2.39 -0.01 1.58 16 38 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 39 H 0.11 2.96 7.09 -2.39 -0.02 2.94 16 40 H 0.13 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.17 2.67 8.06 -2.91 -0.02 2.64 16 42 H 0.17 3.27 8.06 -2.91 -0.02 3.25 16 43 H 0.11 5.53 6.61 -2.91 -0.02 5.52 16 Total: -1.00 -62.16 356.33 6.16 -56.00 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 1.01 Total: 18.85 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: 3.99 Total: -14.19 kcal Atomic # 7 Polarization: -74.75 SS G_CDS: -1.60 Total: -76.35 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.04 Total: -24.57 kcal Atomic # 9 Polarization: -5.72 SS G_CDS: 0.78 Total: -4.95 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -62.16 6.16 -56.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793245216.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.296 kcal (2) G-P(sol) polarization free energy of solvation -62.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds