Wall clock time and date at job start Tue Mar 31 2020 08:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46929 * 2 1 4 4 C 1.52999 * 109.47175 * 240.00420 * 2 1 3 5 5 N 1.46502 * 109.47143 * 294.55670 * 4 2 1 6 6 C 1.46505 * 119.99978 * 95.69267 * 5 4 2 7 7 C 1.50700 * 109.46899 * 89.99933 * 6 5 4 8 8 H 1.08005 * 120.00302 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99947 * 180.02562 * 7 6 5 10 10 N 1.31510 * 119.99883 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99866 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46936 * 90.00062 * 11 9 7 13 13 H 1.48503 * 109.46783 * 209.99895 * 11 9 7 14 14 H 1.48500 * 109.47075 * 329.99915 * 11 9 7 15 15 C 1.34771 * 120.00340 * 275.69587 * 5 4 2 16 16 O 1.21287 * 119.99484 * 4.70092 * 15 5 4 17 17 C 1.50695 * 120.00545 * 184.70062 * 15 5 4 18 18 H 1.08998 * 112.82745 * 320.17519 * 17 15 5 19 19 C 1.53519 * 113.58992 * 189.05793 * 17 15 5 20 20 C 1.51621 * 87.24710 * 245.40852 * 19 17 15 21 21 C 1.38396 * 147.48429 * 180.02562 * 20 19 17 22 22 C 1.38059 * 120.35208 * 179.97438 * 21 20 19 23 23 C 1.38464 * 119.93318 * 359.97213 * 22 21 20 24 24 F 1.35097 * 120.04952 * 179.97438 * 23 22 21 25 25 C 1.38319 * 119.90262 * 0.02562 * 23 22 21 26 26 C 1.38344 * 120.30277 * 0.02562 * 25 23 22 27 27 H 1.09000 * 109.47615 * 59.99947 * 1 2 3 28 28 H 1.09007 * 109.47143 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47436 * 299.99332 * 1 2 3 30 30 H 1.09000 * 109.47615 * 120.00053 * 2 1 3 31 31 H 1.09001 * 109.46516 * 60.00105 * 3 2 1 32 32 H 1.08999 * 109.47265 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47015 * 300.00420 * 3 2 1 34 34 H 1.09002 * 109.47032 * 54.56012 * 4 2 1 35 35 H 1.09000 * 109.47490 * 174.55756 * 4 2 1 36 36 H 1.08991 * 109.47443 * 209.99917 * 6 5 4 37 37 H 1.09005 * 109.46794 * 330.00491 * 6 5 4 38 38 H 0.97006 * 120.00047 * 180.02562 * 10 9 7 39 39 H 1.08994 * 113.58411 * 0.02562 * 19 17 15 40 40 H 1.09002 * 113.58448 * 130.73395 * 19 17 15 41 41 H 1.07997 * 119.82022 * 359.94709 * 21 20 19 42 42 H 1.08002 * 120.03260 * 180.02562 * 22 21 20 43 43 H 1.08003 * 119.85207 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6616 -2.1350 -1.1857 6 6 0.4457 -2.5989 -1.8586 7 6 0.7787 -3.0117 -3.2692 8 1 1.7945 -2.9365 -3.6284 9 6 -0.2134 -3.4854 -4.1013 10 7 -1.4504 -3.5765 -3.6641 11 14 0.1995 -3.9977 -5.8496 12 1 0.5612 -5.4379 -5.8710 13 1 -0.9794 -3.7703 -6.7235 14 1 1.3450 -3.1923 -6.3440 15 6 2.4319 -3.0090 -0.5081 16 8 3.3907 -2.6122 0.1197 17 6 2.1019 -4.4792 -0.5304 18 1 1.0309 -4.6732 -0.4714 19 6 2.9321 -5.3103 0.4580 20 6 3.5491 -5.9926 -0.7472 21 6 4.4412 -6.9373 -1.2238 22 6 4.5878 -7.1356 -2.5822 23 6 3.8392 -6.3870 -3.4745 24 9 3.9812 -6.5787 -4.8042 25 6 2.9464 -5.4418 -3.0024 26 6 2.7980 -5.2400 -1.6419 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6765 1.9563 0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6765 1.9564 -0.8899 34 1 1.5993 -0.2666 -2.1366 35 1 3.1256 -0.6375 -1.2994 36 1 0.0340 -3.4512 -1.3183 37 1 -0.2880 -1.7930 -1.8795 38 1 -2.1483 -3.9102 -4.2494 39 1 3.6422 -4.7190 1.0360 40 1 2.3328 -5.9764 1.0787 41 1 5.0260 -7.5222 -0.5293 42 1 5.2852 -7.8746 -2.9484 43 1 2.3626 -4.8585 -3.6992 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793245217.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:12 Heat of formation + Delta-G solvation = -31.490579 kcal Electronic energy + Delta-G solvation = -25865.840046 eV Core-core repulsion = 22212.320627 eV Total energy + Delta-G solvation = -3653.519419 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.54349 -40.56755 -38.63305 -36.17473 -34.53334 -34.01880 -32.34638 -30.48202 -27.83144 -27.37852 -26.80074 -25.94900 -24.15230 -23.00407 -21.87846 -20.62111 -19.83832 -18.25675 -17.14173 -16.55874 -16.42735 -16.19914 -15.56299 -15.24027 -14.86950 -14.69134 -14.48449 -14.28632 -13.89954 -13.31000 -13.24445 -13.17951 -12.60496 -12.50337 -12.24404 -12.02836 -11.93005 -11.70038 -11.49875 -11.41673 -11.31558 -11.02324 -10.93657 -10.90956 -10.65155 -10.55471 -10.30727 -10.23062 -10.04249 -9.72322 -9.28322 -8.63605 -8.49913 -8.11454 -7.75259 -6.23497 -4.29582 1.40146 1.56962 3.18811 3.19795 3.27747 3.32202 3.77128 3.95724 4.28451 4.36081 4.50685 4.78212 4.94556 5.09725 5.17589 5.28202 5.29865 5.36087 5.46495 5.57594 5.66547 5.86770 5.90613 5.97799 5.99852 6.02017 6.06080 6.15716 6.25449 6.28445 6.33400 6.35058 6.40828 6.46757 6.50937 6.59286 6.73016 6.79311 7.04130 7.12915 7.22039 7.48912 7.70932 8.01176 8.27048 8.73041 8.92870 9.37045 10.83159 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.010717 B = 0.006825 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.989621 B = 4101.747548 C = 5933.501773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C -0.141 4.141 4 C 0.127 3.873 5 N -0.587 5.587 6 C 0.234 3.766 7 C -0.535 4.535 8 H 0.062 0.938 9 C 0.070 3.930 10 N -0.888 5.888 11 Si 0.878 3.122 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.270 1.270 15 C 0.531 3.469 16 O -0.567 6.567 17 C -0.061 4.061 18 H 0.125 0.875 19 C -0.056 4.056 20 C -0.138 4.138 21 C -0.077 4.077 22 C -0.155 4.155 23 C 0.088 3.912 24 F -0.142 7.142 25 C -0.114 4.114 26 C -0.056 4.056 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.036 0.964 37 H 0.043 0.957 38 H 0.265 0.735 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.124 0.876 42 H 0.133 0.867 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.829 -1.239 6.362 8.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.131 4.131 3 C -0.199 4.199 4 C 0.004 3.996 5 N -0.316 5.316 6 C 0.115 3.885 7 C -0.574 4.574 8 H 0.080 0.920 9 C -0.133 4.133 10 N -0.526 5.526 11 Si 0.705 3.295 12 H -0.200 1.200 13 H -0.209 1.209 14 H -0.195 1.195 15 C 0.319 3.681 16 O -0.448 6.448 17 C -0.082 4.082 18 H 0.142 0.858 19 C -0.093 4.093 20 C -0.139 4.139 21 C -0.095 4.095 22 C -0.174 4.174 23 C 0.069 3.931 24 F -0.121 7.121 25 C -0.132 4.132 26 C -0.057 4.057 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.124 0.876 40 H 0.111 0.889 41 H 0.142 0.858 42 H 0.151 0.849 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.109 -1.075 6.532 9.008 hybrid contribution -0.074 -0.417 -1.651 1.704 sum 6.036 -1.492 4.881 7.905 Atomic orbital electron populations 1.21869 0.95045 1.02411 1.00856 1.21482 0.96236 0.95809 0.99537 1.21748 1.00788 0.96004 1.01373 1.21367 0.99814 0.81155 0.97281 1.48181 1.26271 1.07042 1.50078 1.19559 0.80996 0.96006 0.91987 1.21462 0.95077 1.43897 0.96922 0.91982 1.24860 0.94846 0.95342 0.98276 1.69893 1.00448 1.45635 1.36588 0.86799 0.78403 0.79624 0.84705 1.19966 1.20870 1.19506 1.19798 0.82299 0.87146 0.78889 1.90588 1.29826 1.79791 1.44588 1.21517 1.02038 0.92297 0.92319 0.85762 1.21818 0.97403 0.95785 0.94297 1.22365 0.96870 0.96686 0.97950 1.19952 0.97969 0.97648 0.93944 1.20868 1.01878 1.01780 0.92829 1.17421 0.99426 0.98880 0.77336 1.91475 1.94908 1.94402 1.31307 1.20767 0.98162 0.97864 0.96434 1.21272 0.96369 0.96093 0.91934 0.92722 0.91900 0.93660 0.91064 0.92999 0.92864 0.92762 0.90276 0.91564 0.94577 0.93887 0.92478 0.87598 0.88882 0.85770 0.84913 0.83140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 8.36 37.16 0.31 -1.88 16 2 C -0.11 -1.72 3.08 -90.62 -0.28 -2.00 16 3 C -0.14 -1.81 9.19 37.16 0.34 -1.47 16 4 C 0.13 2.29 4.74 -4.04 -0.02 2.27 16 5 N -0.59 -11.75 2.20 -175.06 -0.38 -12.14 16 6 C 0.23 5.20 4.03 -5.19 -0.02 5.18 16 7 C -0.54 -13.10 7.96 -34.44 -0.27 -13.37 16 8 H 0.06 1.57 6.92 -52.48 -0.36 1.21 16 9 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 10 N -0.89 -23.55 13.29 55.43 0.74 -22.82 16 11 Si 0.88 20.27 28.92 -169.99 -4.92 15.35 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 15 C 0.53 10.66 7.14 -10.99 -0.08 10.58 16 16 O -0.57 -12.20 15.35 5.55 0.09 -12.11 16 17 C -0.06 -1.10 3.48 -92.22 -0.32 -1.43 16 18 H 0.12 2.22 6.42 -51.93 -0.33 1.89 16 19 C -0.06 -0.84 7.76 -27.18 -0.21 -1.05 16 20 C -0.14 -2.26 7.48 -103.86 -0.78 -3.04 16 21 C -0.08 -1.11 10.03 -39.59 -0.40 -1.50 16 22 C -0.15 -2.32 10.02 -39.56 -0.40 -2.71 16 23 C 0.09 1.60 7.30 -39.47 -0.29 1.31 16 24 F -0.14 -2.63 17.27 2.25 0.04 -2.59 16 25 C -0.11 -2.28 9.88 -39.51 -0.39 -2.67 16 26 C -0.06 -1.06 6.97 -103.88 -0.72 -1.79 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 1.06 6.33 -51.92 -0.33 0.73 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 1.20 8.02 -51.93 -0.42 0.79 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.08 1.42 8.03 -51.93 -0.42 1.01 16 35 H 0.07 1.22 7.67 -51.93 -0.40 0.82 16 36 H 0.04 0.83 6.09 -51.93 -0.32 0.52 16 37 H 0.04 1.00 6.63 -51.93 -0.34 0.65 16 38 H 0.27 6.79 8.31 -40.82 -0.34 6.46 16 39 H 0.11 1.63 7.08 -51.93 -0.37 1.26 16 40 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 42 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 43 H 0.15 3.34 5.03 -52.48 -0.26 3.08 16 LS Contribution 352.72 15.07 5.32 5.32 Total: -1.00 -27.54 352.72 -8.81 -36.35 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -6.07 Total: 4.51 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -3.62 Total: -11.88 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.35 Total: -34.95 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.09 Total: -12.11 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.04 Total: -2.59 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.92 Total: 15.35 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -27.54 -8.81 -36.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793245217.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.864 kcal (2) G-P(sol) polarization free energy of solvation -27.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds