Wall clock time and date at job start Tue Mar 31 2020 08:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46929 * 2 1 4 4 C 1.52999 * 109.47175 * 240.00420 * 2 1 3 5 5 N 1.46502 * 109.47143 * 294.55670 * 4 2 1 6 6 C 1.46505 * 119.99978 * 95.69267 * 5 4 2 7 7 C 1.50700 * 109.46899 * 89.99933 * 6 5 4 8 8 H 1.08005 * 120.00302 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99947 * 180.02562 * 7 6 5 10 10 N 1.31510 * 119.99883 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99866 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46936 * 90.00062 * 11 9 7 13 13 H 1.48503 * 109.46783 * 209.99895 * 11 9 7 14 14 H 1.48500 * 109.47075 * 329.99915 * 11 9 7 15 15 C 1.34771 * 120.00340 * 275.69587 * 5 4 2 16 16 O 1.21287 * 119.99484 * 4.70092 * 15 5 4 17 17 C 1.50695 * 120.00545 * 184.70062 * 15 5 4 18 18 H 1.08998 * 112.82745 * 320.17519 * 17 15 5 19 19 C 1.53519 * 113.58992 * 189.05793 * 17 15 5 20 20 C 1.51621 * 87.24710 * 245.40852 * 19 17 15 21 21 C 1.38396 * 147.48429 * 180.02562 * 20 19 17 22 22 C 1.38059 * 120.35208 * 179.97438 * 21 20 19 23 23 C 1.38464 * 119.93318 * 359.97213 * 22 21 20 24 24 F 1.35097 * 120.04952 * 179.97438 * 23 22 21 25 25 C 1.38319 * 119.90262 * 0.02562 * 23 22 21 26 26 C 1.38344 * 120.30277 * 0.02562 * 25 23 22 27 27 H 1.09000 * 109.47615 * 59.99947 * 1 2 3 28 28 H 1.09007 * 109.47143 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47436 * 299.99332 * 1 2 3 30 30 H 1.09000 * 109.47615 * 120.00053 * 2 1 3 31 31 H 1.09001 * 109.46516 * 60.00105 * 3 2 1 32 32 H 1.08999 * 109.47265 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47015 * 300.00420 * 3 2 1 34 34 H 1.09002 * 109.47032 * 54.56012 * 4 2 1 35 35 H 1.09000 * 109.47490 * 174.55756 * 4 2 1 36 36 H 1.08991 * 109.47443 * 209.99917 * 6 5 4 37 37 H 1.09005 * 109.46794 * 330.00491 * 6 5 4 38 38 H 0.97006 * 120.00047 * 180.02562 * 10 9 7 39 39 H 1.08994 * 113.58411 * 0.02562 * 19 17 15 40 40 H 1.09002 * 113.58448 * 130.73395 * 19 17 15 41 41 H 1.07997 * 119.82022 * 359.94709 * 21 20 19 42 42 H 1.08002 * 120.03260 * 180.02562 * 22 21 20 43 43 H 1.08003 * 119.85207 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6616 -2.1350 -1.1857 6 6 0.4457 -2.5989 -1.8586 7 6 0.7787 -3.0117 -3.2692 8 1 1.7945 -2.9365 -3.6284 9 6 -0.2134 -3.4854 -4.1013 10 7 -1.4504 -3.5765 -3.6641 11 14 0.1995 -3.9977 -5.8496 12 1 0.5612 -5.4379 -5.8710 13 1 -0.9794 -3.7703 -6.7235 14 1 1.3450 -3.1923 -6.3440 15 6 2.4319 -3.0090 -0.5081 16 8 3.3907 -2.6122 0.1197 17 6 2.1019 -4.4792 -0.5304 18 1 1.0309 -4.6732 -0.4714 19 6 2.9321 -5.3103 0.4580 20 6 3.5491 -5.9926 -0.7472 21 6 4.4412 -6.9373 -1.2238 22 6 4.5878 -7.1356 -2.5822 23 6 3.8392 -6.3870 -3.4745 24 9 3.9812 -6.5787 -4.8042 25 6 2.9464 -5.4418 -3.0024 26 6 2.7980 -5.2400 -1.6419 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6765 1.9563 0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6765 1.9564 -0.8899 34 1 1.5993 -0.2666 -2.1366 35 1 3.1256 -0.6375 -1.2994 36 1 0.0340 -3.4512 -1.3183 37 1 -0.2880 -1.7930 -1.8795 38 1 -2.1483 -3.9102 -4.2494 39 1 3.6422 -4.7190 1.0360 40 1 2.3328 -5.9764 1.0787 41 1 5.0260 -7.5222 -0.5293 42 1 5.2852 -7.8746 -2.9484 43 1 2.3626 -4.8585 -3.6992 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793245217.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:11 Heat of formation + Delta-G solvation = -43.469562 kcal Electronic energy + Delta-G solvation = -25866.359494 eV Core-core repulsion = 22212.320627 eV Total energy + Delta-G solvation = -3654.038866 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.94656 -41.97521 -40.11236 -37.64287 -35.96108 -35.57229 -34.16570 -31.79965 -29.52244 -28.86043 -27.99231 -27.34728 -25.61401 -24.73106 -23.25730 -21.95121 -21.14600 -19.79189 -18.83343 -18.13540 -18.03104 -17.62303 -17.06709 -16.68077 -16.51263 -16.09642 -16.05900 -15.70567 -15.20085 -14.73241 -14.58851 -14.52274 -14.28460 -13.83156 -13.76667 -13.55020 -13.40333 -13.06845 -12.98679 -12.89180 -12.70620 -12.67466 -12.44951 -12.22999 -12.14532 -12.06613 -11.91468 -11.61361 -11.55816 -11.42982 -10.85571 -10.58510 -9.89279 -9.43962 -9.43357 -8.23166 -6.32599 0.09111 0.25105 1.30314 1.35915 1.40843 1.62787 2.23998 2.38072 2.60322 3.00399 3.08427 3.24576 3.51549 3.63991 3.72752 4.01530 4.04743 4.05346 4.20035 4.27232 4.40425 4.60085 4.63854 4.68508 4.73550 4.80578 4.84102 4.90269 4.92716 5.02299 5.02507 5.07031 5.11166 5.17493 5.20055 5.22565 5.27487 5.42536 5.46655 5.65165 5.70030 5.85651 5.92525 6.06626 6.54710 6.80313 7.26319 7.39039 8.82446 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.010717 B = 0.006825 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.989621 B = 4101.747548 C = 5933.501773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 C -0.135 4.135 4 C 0.123 3.877 5 N -0.590 5.590 6 C 0.252 3.748 7 C -0.528 4.528 8 H 0.048 0.952 9 C 0.036 3.964 10 N -0.913 5.913 11 Si 0.922 3.078 12 H -0.278 1.278 13 H -0.277 1.277 14 H -0.273 1.273 15 C 0.528 3.472 16 O -0.583 6.583 17 C -0.072 4.072 18 H 0.119 0.881 19 C -0.037 4.037 20 C -0.131 4.131 21 C -0.065 4.065 22 C -0.138 4.138 23 C 0.067 3.933 24 F -0.151 7.151 25 C -0.144 4.144 26 C -0.093 4.093 27 H 0.053 0.947 28 H 0.039 0.961 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.028 0.972 37 H 0.034 0.966 38 H 0.266 0.734 39 H 0.106 0.894 40 H 0.129 0.871 41 H 0.171 0.829 42 H 0.171 0.829 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.193 -2.131 7.774 10.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.122 4.122 3 C -0.193 4.193 4 C 0.000 4.000 5 N -0.319 5.319 6 C 0.131 3.869 7 C -0.567 4.567 8 H 0.066 0.934 9 C -0.165 4.165 10 N -0.552 5.552 11 Si 0.748 3.252 12 H -0.204 1.204 13 H -0.203 1.203 14 H -0.198 1.198 15 C 0.316 3.684 16 O -0.465 6.465 17 C -0.092 4.092 18 H 0.136 0.864 19 C -0.074 4.074 20 C -0.132 4.132 21 C -0.083 4.083 22 C -0.156 4.156 23 C 0.048 3.952 24 F -0.130 7.130 25 C -0.163 4.163 26 C -0.093 4.093 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.046 0.954 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.124 0.876 40 H 0.147 0.853 41 H 0.189 0.811 42 H 0.188 0.812 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.479 -1.953 7.940 11.081 hybrid contribution -0.438 -0.144 -2.083 2.133 sum 7.040 -2.097 5.857 9.395 Atomic orbital electron populations 1.21809 0.94671 1.01245 1.01924 1.21393 0.96419 0.97151 0.97280 1.21706 1.00895 0.94002 1.02700 1.21510 0.99382 0.80448 0.98644 1.48181 1.25710 1.08099 1.49892 1.19193 0.81563 0.95189 0.90910 1.21553 0.94219 1.42947 0.97942 0.93364 1.25321 0.94864 0.95659 1.00665 1.69954 1.00956 1.46831 1.37464 0.86107 0.78090 0.78883 0.82080 1.20439 1.20258 1.19769 1.20174 0.81873 0.88037 0.78297 1.90561 1.30356 1.80326 1.45262 1.21641 1.02336 0.91261 0.93984 0.86357 1.21800 0.96838 0.95240 0.93529 1.22655 0.96504 0.96469 0.97524 1.20453 0.96852 0.96615 0.94347 1.21300 1.00808 1.00934 0.92566 1.17681 1.00298 0.99656 0.77548 1.91444 1.95016 1.94491 1.32038 1.20685 0.99639 0.99317 0.96616 1.21458 0.98122 0.97754 0.92001 0.92834 0.94170 0.91345 0.92406 0.91085 0.92694 0.92012 0.90730 0.92292 0.95409 0.94844 0.92429 0.87606 0.85332 0.81149 0.81190 0.86529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.15 8.36 71.98 0.60 -3.55 16 2 C -0.10 -3.15 3.08 -10.79 -0.03 -3.19 16 3 C -0.14 -3.25 9.19 71.98 0.66 -2.59 16 4 C 0.12 4.51 4.74 86.38 0.41 4.92 16 5 N -0.59 -24.39 2.20 -826.15 -1.82 -26.20 16 6 C 0.25 11.62 4.03 85.63 0.34 11.97 16 7 C -0.53 -26.86 7.96 25.60 0.20 -26.66 16 8 H 0.05 2.56 6.92 -2.91 -0.02 2.54 16 9 C 0.04 1.87 5.46 84.66 0.46 2.33 16 10 N -0.91 -49.52 13.29 21.45 0.28 -49.24 16 11 Si 0.92 42.83 28.92 68.60 1.98 44.82 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 13 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 14 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 15 C 0.53 21.54 7.14 87.66 0.63 22.17 16 16 O -0.58 -25.14 15.35 -3.05 -0.05 -25.19 16 17 C -0.07 -2.60 3.48 -11.83 -0.04 -2.64 16 18 H 0.12 4.35 6.42 -2.39 -0.02 4.34 16 19 C -0.04 -1.04 7.76 30.30 0.24 -0.80 16 20 C -0.13 -3.98 7.48 -19.37 -0.14 -4.12 16 21 C -0.07 -1.61 10.03 22.26 0.22 -1.38 16 22 C -0.14 -3.69 10.02 22.28 0.22 -3.47 16 23 C 0.07 2.40 7.30 22.34 0.16 2.56 16 24 F -0.15 -5.61 17.27 44.97 0.78 -4.83 16 25 C -0.14 -5.94 9.88 22.31 0.22 -5.72 16 26 C -0.09 -3.53 6.97 -19.38 -0.14 -3.67 16 27 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.04 1.36 6.33 -2.38 -0.02 1.35 16 29 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.06 1.94 8.02 -2.39 -0.02 1.92 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 32 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.07 2.76 8.03 -2.39 -0.02 2.74 16 35 H 0.06 2.23 7.67 -2.39 -0.02 2.21 16 36 H 0.03 1.34 6.09 -2.39 -0.01 1.32 16 37 H 0.03 1.61 6.63 -2.38 -0.02 1.60 16 38 H 0.27 13.88 8.31 -92.70 -0.77 13.11 16 39 H 0.11 3.00 7.08 -2.39 -0.02 2.99 16 40 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16 41 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 42 H 0.17 3.27 8.06 -2.91 -0.02 3.24 16 43 H 0.12 5.51 5.03 -2.91 -0.01 5.49 16 Total: -1.00 -61.31 352.72 6.22 -55.09 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 1.02 Total: 19.39 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: 4.02 Total: -13.84 kcal Atomic # 7 Polarization: -73.91 SS G_CDS: -1.53 Total: -75.44 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.05 Total: -25.19 kcal Atomic # 9 Polarization: -5.61 SS G_CDS: 0.78 Total: -4.83 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 1.98 Total: 44.82 kcal Total: -61.31 6.22 -55.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793245217.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.621 kcal (2) G-P(sol) polarization free energy of solvation -61.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds