Wall clock time and date at job start Tue Mar 31 2020 09:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09009 * 109.46646 * 2 1 4 4 C 1.52995 * 109.47371 * 119.99956 * 2 1 3 5 5 C 1.50707 * 109.47186 * 295.00393 * 4 2 1 6 6 C 1.38241 * 119.97667 * 89.99939 * 5 4 2 7 7 C 1.38195 * 120.02568 * 180.02562 * 6 5 4 8 8 C 1.38456 * 119.97817 * 0.22897 * 7 6 5 9 9 F 1.35095 * 120.02903 * 179.72789 * 8 7 6 10 10 C 1.38465 * 119.94258 * 359.49440 * 8 7 6 11 11 C 1.38200 * 119.97653 * 0.53095 * 10 8 7 12 12 C 1.50695 * 109.46997 * 240.00390 * 2 1 3 13 13 O 1.21287 * 119.99650 * 238.28955 * 12 2 1 14 14 N 1.34776 * 120.00445 * 58.29264 * 12 2 1 15 15 C 1.46499 * 120.00069 * 184.37089 * 14 12 2 16 16 C 1.53001 * 109.47009 * 175.20480 * 15 14 12 17 17 C 1.50697 * 115.54816 * 65.31751 * 16 15 14 18 18 H 1.08000 * 120.00114 * 271.03633 * 17 16 15 19 19 C 1.37881 * 119.99823 * 91.04315 * 17 16 15 20 20 N 1.31516 * 119.99551 * 181.85270 * 19 17 16 21 21 Si 1.86794 * 119.99978 * 1.85066 * 19 17 16 22 22 H 1.48497 * 109.47296 * 93.15384 * 21 19 17 23 23 H 1.48512 * 109.46899 * 213.15393 * 21 19 17 24 24 H 1.48502 * 109.47281 * 333.14664 * 21 19 17 25 25 C 1.53002 * 117.49841 * 279.64610 * 16 15 14 26 26 C 1.52999 * 117.49877 * 210.98802 * 16 15 14 27 27 H 1.08994 * 109.47115 * 65.47392 * 1 2 3 28 28 H 1.09002 * 109.46607 * 185.47732 * 1 2 3 29 29 H 1.08999 * 109.46964 * 305.47020 * 1 2 3 30 30 H 1.08995 * 109.47217 * 175.00716 * 4 2 1 31 31 H 1.08997 * 109.46969 * 55.00013 * 4 2 1 32 32 H 1.08005 * 119.98419 * 359.97438 * 6 5 4 33 33 H 1.08002 * 120.01330 * 179.97438 * 7 6 5 34 34 H 1.08000 * 120.01090 * 180.25283 * 10 8 7 35 35 H 1.07997 * 119.98503 * 179.70061 * 11 10 8 36 36 H 0.97000 * 119.99593 * 4.36274 * 14 12 2 37 37 H 1.09000 * 109.46996 * 295.20592 * 15 14 12 38 38 H 1.09000 * 109.46973 * 55.20359 * 15 14 12 39 39 H 0.96996 * 119.99402 * 180.02562 * 20 19 17 40 40 H 1.09003 * 117.49687 * 0.02562 * 25 16 15 41 41 H 1.09003 * 117.49645 * 145.01727 * 25 16 15 42 42 H 1.08994 * 117.50068 * 214.97878 * 26 16 15 43 43 H 1.09007 * 117.49780 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 0.0571 2.4766 6 6 0.4355 -0.2055 3.0994 7 6 0.0686 0.5079 4.2247 8 6 0.9071 1.4892 4.7256 9 9 0.5470 2.1911 5.8223 10 6 2.1173 1.7474 4.1043 11 6 2.4819 1.0330 2.9788 12 6 2.0324 -0.7103 -1.2305 13 8 2.7550 -1.6780 -1.1195 14 7 1.6787 -0.2703 -2.4543 15 6 2.0875 -1.0159 -3.6472 16 6 1.4612 -0.3761 -4.8880 17 6 1.9319 1.0193 -5.2075 18 1 1.4244 1.8716 -4.7803 19 6 3.0105 1.2081 -6.0454 20 7 3.4441 2.4244 -6.2953 21 14 3.8560 -0.2636 -6.8255 22 1 3.2643 -0.5230 -8.1626 23 1 5.3065 0.0193 -6.9724 24 1 3.6695 -1.4570 -5.9616 25 6 0.0029 -0.7185 -5.1996 26 6 1.1265 -1.2955 -6.0643 27 1 -0.3633 0.4266 -0.9349 28 1 -0.3632 -1.0230 0.0981 29 1 -0.3633 0.5963 0.8369 30 1 3.1264 -0.7993 1.2056 31 1 1.6055 -1.7197 1.2951 32 1 -0.2206 -0.9679 2.7059 33 1 -0.8738 0.3030 4.7108 34 1 2.7741 2.5098 4.4964 35 1 3.4236 1.2376 2.4913 36 1 1.1533 0.5401 -2.5451 37 1 3.1736 -0.9929 -3.7356 38 1 1.7516 -2.0494 -3.5625 39 1 4.2026 2.5571 -6.8850 40 1 -0.5104 -1.3992 -4.5204 41 1 -0.6159 0.0655 -5.6360 42 1 1.2464 -0.8909 -7.0692 43 1 1.3529 -2.3561 -5.9543 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797564306.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:53 Heat of formation + Delta-G solvation = -50.294579 kcal Electronic energy + Delta-G solvation = -24245.769963 eV Core-core repulsion = 20591.435142 eV Total energy + Delta-G solvation = -3654.334821 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.09116 -39.97188 -39.01488 -37.16098 -34.78275 -33.51919 -32.16484 -31.39929 -30.68409 -26.86137 -26.63784 -25.35604 -23.44270 -23.03399 -21.83954 -21.21725 -19.63141 -19.00924 -17.86740 -17.02223 -16.58719 -16.40833 -15.80037 -15.50450 -15.30189 -15.21401 -14.89569 -14.23381 -14.04011 -13.86454 -13.71169 -13.48164 -13.12280 -12.99859 -12.72744 -12.42074 -12.25644 -12.19095 -11.99564 -11.53107 -11.33064 -11.21436 -11.12831 -10.96553 -10.93713 -10.50866 -10.21969 -9.68391 -9.40916 -9.30963 -9.20811 -8.74505 -8.70168 -8.57713 -8.33635 -6.20082 -4.25141 0.90357 0.99396 3.06091 3.24671 3.31117 3.36254 3.41422 3.70171 4.04514 4.36138 4.47631 4.57942 4.66836 4.83602 4.87497 4.92833 5.05172 5.08232 5.14236 5.16047 5.48532 5.58117 5.64354 5.66743 5.73632 5.77957 5.88376 5.89506 5.98456 6.00385 6.02018 6.11663 6.14238 6.21215 6.37738 6.38780 6.47488 6.65676 6.66797 6.94328 7.03316 7.09404 7.63600 8.12691 8.36249 8.71676 8.79526 9.42919 10.91137 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.024437 B = 0.002806 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.543475 B = 9976.458739 C =10261.273543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 H 0.098 0.902 4 C -0.061 4.061 5 C -0.084 4.084 6 C -0.086 4.086 7 C -0.153 4.153 8 C 0.088 3.912 9 F -0.144 7.144 10 C -0.151 4.151 11 C -0.087 4.087 12 C 0.510 3.490 13 O -0.558 6.558 14 N -0.701 5.701 15 C 0.158 3.842 16 C -0.014 4.014 17 C -0.493 4.493 18 H 0.078 0.922 19 C 0.079 3.921 20 N -0.894 5.894 21 Si 0.881 3.119 22 H -0.280 1.280 23 H -0.295 1.295 24 H -0.256 1.256 25 C -0.179 4.179 26 C -0.193 4.193 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.405 0.595 37 H 0.061 0.939 38 H 0.045 0.955 39 H 0.266 0.734 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.424 -3.911 17.965 19.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 H 0.116 0.884 4 C -0.099 4.099 5 C -0.084 4.084 6 C -0.104 4.104 7 C -0.172 4.172 8 C 0.069 3.931 9 F -0.122 7.122 10 C -0.170 4.170 11 C -0.105 4.105 12 C 0.295 3.705 13 O -0.438 6.438 14 N -0.350 5.350 15 C 0.034 3.966 16 C -0.016 4.016 17 C -0.530 4.530 18 H 0.096 0.904 19 C -0.124 4.124 20 N -0.531 5.531 21 Si 0.709 3.291 22 H -0.206 1.206 23 H -0.222 1.222 24 H -0.180 1.180 25 C -0.217 4.217 26 C -0.231 4.231 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.240 0.760 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.792 -4.463 17.954 19.386 hybrid contribution 0.240 -0.052 -0.467 0.528 sum -5.552 -4.515 17.486 18.894 Atomic orbital electron populations 1.21861 0.93018 1.02551 1.02920 1.21257 0.97651 1.01066 0.92723 0.88353 1.20419 1.02543 0.97920 0.89030 1.20033 0.94405 0.96863 0.97082 1.20980 0.96073 0.99126 0.94248 1.21135 1.00539 0.97082 0.98438 1.17737 0.95308 0.94078 0.86000 1.91488 1.91926 1.77469 1.51359 1.21156 0.96002 1.02248 0.97594 1.21011 0.99934 0.94636 0.94910 1.20471 0.80593 0.84597 0.84815 1.90655 1.37522 1.28516 1.87075 1.45881 1.54855 1.29004 1.05255 1.21088 0.99333 0.92657 0.83521 1.19627 0.94043 0.95988 0.91899 1.20185 1.14693 0.88663 1.29443 0.90364 1.24993 0.96108 0.95638 0.95650 1.69887 1.25882 1.20794 1.36518 0.86827 0.78111 0.84022 0.80119 1.20592 1.22184 1.18022 1.22879 0.92499 1.02765 1.03518 1.22932 1.05481 0.97646 0.97039 0.91626 0.92153 0.91533 0.89719 0.90115 0.84911 0.84890 0.84822 0.84786 0.76015 0.92042 0.93677 0.92449 0.90931 0.89409 0.89249 0.90652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.53 37.16 0.32 -1.15 16 2 C -0.11 -1.26 2.72 -91.77 -0.25 -1.51 16 3 H 0.10 1.12 8.14 -51.92 -0.42 0.70 16 4 C -0.06 -0.67 4.20 -27.88 -0.12 -0.79 16 5 C -0.08 -0.80 4.72 -104.61 -0.49 -1.30 16 6 C -0.09 -0.75 8.10 -39.60 -0.32 -1.07 16 7 C -0.15 -1.35 10.03 -39.52 -0.40 -1.75 16 8 C 0.09 0.88 7.30 -39.42 -0.29 0.59 16 9 F -0.14 -1.55 17.27 2.25 0.04 -1.51 16 10 C -0.15 -1.40 10.03 -39.51 -0.40 -1.80 16 11 C -0.09 -0.81 9.70 -39.59 -0.38 -1.19 16 12 C 0.51 8.43 7.17 -10.99 -0.08 8.35 16 13 O -0.56 -11.11 15.91 5.55 0.09 -11.02 16 14 N -0.70 -12.34 5.28 -60.29 -0.32 -12.66 16 15 C 0.16 3.21 5.26 -4.04 -0.02 3.19 16 16 C -0.01 -0.31 0.86 -155.66 -0.13 -0.44 16 17 C -0.49 -12.66 9.23 -34.44 -0.32 -12.98 16 18 H 0.08 2.16 8.06 -52.49 -0.42 1.74 16 19 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 20 N -0.89 -26.08 13.96 55.43 0.77 -25.30 16 21 Si 0.88 21.11 24.75 -169.99 -4.21 16.91 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 24 H -0.26 -5.87 6.03 56.52 0.34 -5.53 16 25 C -0.18 -3.34 9.96 -26.69 -0.27 -3.61 16 26 C -0.19 -3.90 7.17 -26.69 -0.19 -4.09 16 27 H 0.06 0.67 7.41 -51.93 -0.38 0.29 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.59 6.63 -51.93 -0.34 0.24 16 30 H 0.08 1.01 7.87 -51.93 -0.41 0.60 16 31 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 32 H 0.13 0.94 8.04 -52.48 -0.42 0.52 16 33 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 34 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.40 6.68 7.73 -40.82 -0.32 6.36 16 37 H 0.06 1.40 7.66 -51.93 -0.40 1.00 16 38 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 39 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 42 H 0.09 1.90 6.63 -51.93 -0.34 1.55 16 43 H 0.07 1.39 8.14 -51.92 -0.42 0.97 16 LS Contribution 357.23 15.07 5.38 5.38 Total: -1.00 -30.20 357.23 -8.13 -38.34 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -6.46 Total: 7.35 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -3.43 Total: -17.48 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.45 Total: -37.96 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.21 Total: 16.91 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.20 -8.13 -38.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797564306.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.959 kcal (2) G-P(sol) polarization free energy of solvation -30.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds