Wall clock time and date at job start Tue Mar 31 2020 09:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09009 * 109.46646 * 2 1 4 4 C 1.52995 * 109.47371 * 119.99956 * 2 1 3 5 5 C 1.50707 * 109.47186 * 295.00393 * 4 2 1 6 6 C 1.38241 * 119.97667 * 89.99939 * 5 4 2 7 7 C 1.38195 * 120.02568 * 180.02562 * 6 5 4 8 8 C 1.38456 * 119.97817 * 0.22897 * 7 6 5 9 9 F 1.35095 * 120.02903 * 179.72789 * 8 7 6 10 10 C 1.38465 * 119.94258 * 359.49440 * 8 7 6 11 11 C 1.38200 * 119.97653 * 0.53095 * 10 8 7 12 12 C 1.50695 * 109.46997 * 240.00390 * 2 1 3 13 13 O 1.21287 * 119.99650 * 238.28955 * 12 2 1 14 14 N 1.34776 * 120.00445 * 58.29264 * 12 2 1 15 15 C 1.46499 * 120.00069 * 184.37089 * 14 12 2 16 16 C 1.53001 * 109.47009 * 175.20480 * 15 14 12 17 17 C 1.50697 * 115.54816 * 65.31751 * 16 15 14 18 18 H 1.08000 * 120.00114 * 271.03633 * 17 16 15 19 19 C 1.37881 * 119.99823 * 91.04315 * 17 16 15 20 20 N 1.31516 * 119.99551 * 181.85270 * 19 17 16 21 21 Si 1.86794 * 119.99978 * 1.85066 * 19 17 16 22 22 H 1.48497 * 109.47296 * 93.15384 * 21 19 17 23 23 H 1.48512 * 109.46899 * 213.15393 * 21 19 17 24 24 H 1.48502 * 109.47281 * 333.14664 * 21 19 17 25 25 C 1.53002 * 117.49841 * 279.64610 * 16 15 14 26 26 C 1.52999 * 117.49877 * 210.98802 * 16 15 14 27 27 H 1.08994 * 109.47115 * 65.47392 * 1 2 3 28 28 H 1.09002 * 109.46607 * 185.47732 * 1 2 3 29 29 H 1.08999 * 109.46964 * 305.47020 * 1 2 3 30 30 H 1.08995 * 109.47217 * 175.00716 * 4 2 1 31 31 H 1.08997 * 109.46969 * 55.00013 * 4 2 1 32 32 H 1.08005 * 119.98419 * 359.97438 * 6 5 4 33 33 H 1.08002 * 120.01330 * 179.97438 * 7 6 5 34 34 H 1.08000 * 120.01090 * 180.25283 * 10 8 7 35 35 H 1.07997 * 119.98503 * 179.70061 * 11 10 8 36 36 H 0.97000 * 119.99593 * 4.36274 * 14 12 2 37 37 H 1.09000 * 109.46996 * 295.20592 * 15 14 12 38 38 H 1.09000 * 109.46973 * 55.20359 * 15 14 12 39 39 H 0.96996 * 119.99402 * 180.02562 * 20 19 17 40 40 H 1.09003 * 117.49687 * 0.02562 * 25 16 15 41 41 H 1.09003 * 117.49645 * 145.01727 * 25 16 15 42 42 H 1.08994 * 117.50068 * 214.97878 * 26 16 15 43 43 H 1.09007 * 117.49780 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 0.0571 2.4766 6 6 0.4355 -0.2055 3.0994 7 6 0.0686 0.5079 4.2247 8 6 0.9071 1.4892 4.7256 9 9 0.5470 2.1911 5.8223 10 6 2.1173 1.7474 4.1043 11 6 2.4819 1.0330 2.9788 12 6 2.0324 -0.7103 -1.2305 13 8 2.7550 -1.6780 -1.1195 14 7 1.6787 -0.2703 -2.4543 15 6 2.0875 -1.0159 -3.6472 16 6 1.4612 -0.3761 -4.8880 17 6 1.9319 1.0193 -5.2075 18 1 1.4244 1.8716 -4.7803 19 6 3.0105 1.2081 -6.0454 20 7 3.4441 2.4244 -6.2953 21 14 3.8560 -0.2636 -6.8255 22 1 3.2643 -0.5230 -8.1626 23 1 5.3065 0.0193 -6.9724 24 1 3.6695 -1.4570 -5.9616 25 6 0.0029 -0.7185 -5.1996 26 6 1.1265 -1.2955 -6.0643 27 1 -0.3633 0.4266 -0.9349 28 1 -0.3632 -1.0230 0.0981 29 1 -0.3633 0.5963 0.8369 30 1 3.1264 -0.7993 1.2056 31 1 1.6055 -1.7197 1.2951 32 1 -0.2206 -0.9679 2.7059 33 1 -0.8738 0.3030 4.7108 34 1 2.7741 2.5098 4.4964 35 1 3.4236 1.2376 2.4913 36 1 1.1533 0.5401 -2.5451 37 1 3.1736 -0.9929 -3.7356 38 1 1.7516 -2.0494 -3.5625 39 1 4.2026 2.5571 -6.8850 40 1 -0.5104 -1.3992 -4.5204 41 1 -0.6159 0.0655 -5.6360 42 1 1.2464 -0.8909 -7.0692 43 1 1.3529 -2.3561 -5.9543 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797564306.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:52 Heat of formation + Delta-G solvation = -67.229415 kcal Electronic energy + Delta-G solvation = -24246.504313 eV Core-core repulsion = 20591.435142 eV Total energy + Delta-G solvation = -3655.069171 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.86398 -41.08849 -40.00111 -38.75580 -35.76775 -34.98818 -34.20159 -32.08032 -31.52532 -28.44703 -27.48434 -27.18343 -24.37427 -23.83852 -23.38299 -22.11096 -21.19407 -20.45131 -18.59707 -18.52944 -17.93969 -17.32492 -17.01546 -16.71571 -16.54175 -16.39756 -16.16302 -15.51554 -15.10635 -14.91780 -14.73549 -14.45692 -14.42449 -14.27833 -14.24646 -13.83602 -13.50624 -13.10057 -13.03787 -12.99887 -12.74697 -12.38201 -12.18555 -12.11347 -11.99834 -11.94765 -11.77782 -11.52288 -10.98996 -10.82100 -10.63785 -10.28442 -10.01062 -9.85800 -9.47862 -8.30143 -6.36549 0.16841 0.31830 1.33253 1.40345 1.50726 1.74537 2.31058 2.36498 2.66238 3.05501 3.24922 3.33761 3.70115 3.79107 3.93389 4.00482 4.03192 4.06237 4.20827 4.37046 4.37974 4.40408 4.42601 4.50702 4.54942 4.80201 4.85595 4.87830 4.92046 4.94505 5.04396 5.10096 5.11823 5.20582 5.23506 5.30832 5.31814 5.34979 5.49007 5.61906 5.64786 5.70512 5.96940 6.28086 6.70428 6.77266 7.33734 7.37002 8.84354 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.024437 B = 0.002806 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.543475 B = 9976.458739 C =10261.273543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 H 0.105 0.895 4 C -0.054 4.054 5 C -0.088 4.088 6 C -0.083 4.083 7 C -0.152 4.152 8 C 0.071 3.929 9 F -0.152 7.152 10 C -0.156 4.156 11 C -0.094 4.094 12 C 0.508 3.492 13 O -0.593 6.593 14 N -0.702 5.702 15 C 0.166 3.834 16 C -0.037 4.037 17 C -0.480 4.480 18 H 0.047 0.953 19 C 0.024 3.976 20 N -0.944 5.944 21 Si 0.932 3.068 22 H -0.270 1.270 23 H -0.305 1.305 24 H -0.238 1.238 25 C -0.151 4.151 26 C -0.196 4.196 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.410 0.590 37 H 0.031 0.969 38 H 0.058 0.942 39 H 0.264 0.736 40 H 0.104 0.896 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.070 -5.552 18.937 21.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 H 0.123 0.877 4 C -0.092 4.092 5 C -0.088 4.088 6 C -0.101 4.101 7 C -0.171 4.171 8 C 0.052 3.948 9 F -0.130 7.130 10 C -0.175 4.175 11 C -0.112 4.112 12 C 0.296 3.704 13 O -0.474 6.474 14 N -0.352 5.352 15 C 0.042 3.958 16 C -0.039 4.039 17 C -0.517 4.517 18 H 0.065 0.935 19 C -0.174 4.174 20 N -0.584 5.584 21 Si 0.758 3.242 22 H -0.196 1.196 23 H -0.233 1.233 24 H -0.161 1.161 25 C -0.188 4.188 26 C -0.233 4.233 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.170 0.830 33 H 0.169 0.831 34 H 0.163 0.837 35 H 0.159 0.841 36 H 0.246 0.754 37 H 0.050 0.950 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.122 0.878 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.471 -6.110 18.939 21.257 hybrid contribution 0.708 0.505 -0.706 1.120 sum -6.763 -5.605 18.233 20.239 Atomic orbital electron populations 1.21855 0.91039 1.03383 1.03584 1.21261 0.99147 1.00706 0.90684 0.87686 1.20305 1.01619 0.98078 0.89164 1.19946 0.95075 0.97005 0.96788 1.21171 0.95818 0.99219 0.93915 1.21360 1.01031 0.96387 0.98310 1.18001 0.95954 0.94693 0.86130 1.91468 1.92024 1.77748 1.51796 1.21312 0.96130 1.02507 0.97516 1.21144 1.00323 0.94675 0.95049 1.21252 0.79553 0.84103 0.85492 1.90637 1.38986 1.30226 1.87565 1.45891 1.55047 1.29115 1.05102 1.20803 0.97436 0.93529 0.84041 1.19457 0.96858 0.94224 0.93312 1.20383 1.13465 0.90230 1.27668 0.93469 1.25738 0.97216 0.97655 0.96761 1.70017 1.27055 1.22919 1.38362 0.86009 0.76438 0.81838 0.79942 1.19584 1.23317 1.16145 1.22901 0.90913 1.02459 1.02541 1.23009 1.05965 0.98500 0.95858 0.91802 0.91446 0.89830 0.91157 0.90044 0.82981 0.83070 0.83717 0.84138 0.75430 0.95040 0.92400 0.92700 0.87815 0.89612 0.90484 0.88341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 8.53 71.98 0.61 -1.83 16 2 C -0.10 -2.16 2.72 -11.54 -0.03 -2.19 16 3 H 0.11 2.23 8.14 -2.38 -0.02 2.21 16 4 C -0.05 -1.10 4.20 29.85 0.13 -0.98 16 5 C -0.09 -1.52 4.72 -19.86 -0.09 -1.62 16 6 C -0.08 -1.23 8.10 22.26 0.18 -1.05 16 7 C -0.15 -2.33 10.03 22.31 0.22 -2.11 16 8 C 0.07 1.31 7.30 22.38 0.16 1.47 16 9 F -0.15 -3.09 17.27 44.97 0.78 -2.32 16 10 C -0.16 -2.69 10.03 22.31 0.22 -2.47 16 11 C -0.09 -1.63 9.70 22.26 0.22 -1.41 16 12 C 0.51 16.26 7.17 87.66 0.63 16.88 16 13 O -0.59 -23.19 15.91 -3.05 -0.05 -23.24 16 14 N -0.70 -23.96 5.28 -463.06 -2.45 -26.41 16 15 C 0.17 6.56 5.26 86.38 0.45 7.01 16 16 C -0.04 -1.54 0.86 -52.93 -0.05 -1.59 16 17 C -0.48 -24.85 9.23 25.60 0.24 -24.61 16 18 H 0.05 2.67 8.06 -2.91 -0.02 2.65 16 19 C 0.02 1.35 5.47 84.66 0.46 1.81 16 20 N -0.94 -56.70 13.96 21.45 0.30 -56.40 16 21 Si 0.93 43.55 24.75 68.60 1.70 45.25 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.31 -14.70 7.11 99.48 0.71 -13.99 16 24 H -0.24 -10.35 6.03 99.48 0.60 -9.75 16 25 C -0.15 -5.17 9.96 30.62 0.30 -4.86 16 26 C -0.20 -7.34 7.17 30.62 0.22 -7.12 16 27 H 0.06 1.15 7.41 -2.39 -0.02 1.13 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.08 1.20 6.63 -2.39 -0.02 1.18 16 30 H 0.07 1.64 7.87 -2.39 -0.02 1.62 16 31 H 0.08 1.65 8.08 -2.39 -0.02 1.63 16 32 H 0.15 1.62 8.04 -2.91 -0.02 1.60 16 33 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 34 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 35 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 36 H 0.41 13.12 7.73 -92.71 -0.72 12.41 16 37 H 0.03 1.41 7.66 -2.39 -0.02 1.40 16 38 H 0.06 2.13 8.09 -2.39 -0.02 2.12 16 39 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 40 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 41 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 42 H 0.08 3.10 6.63 -2.39 -0.02 3.08 16 43 H 0.10 3.26 8.14 -2.38 -0.02 3.24 16 Total: -1.00 -65.85 357.23 4.35 -61.50 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: 0.19 Total: 26.27 kcal Atomic # 6 Polarization: -28.54 SS G_CDS: 3.88 Total: -24.65 kcal Atomic # 7 Polarization: -80.66 SS G_CDS: -2.15 Total: -82.81 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.05 Total: -23.24 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.78 Total: -2.32 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.70 Total: 45.25 kcal Total: -65.85 4.35 -61.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797564306.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.728 kcal (2) G-P(sol) polarization free energy of solvation -65.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds