Wall clock time and date at job start Tue Mar 31 2020 09:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 110.34715 * 2 1 4 4 C 1.54347 * 110.30167 * 122.13287 * 2 1 3 5 5 C 1.54339 * 102.38668 * 145.26629 * 4 2 1 6 6 H 1.09001 * 110.39126 * 214.69209 * 5 4 2 7 7 N 1.46903 * 110.30763 * 92.57481 * 5 4 2 8 8 C 1.46901 * 111.00191 * 157.80348 * 7 5 4 9 9 C 1.53000 * 109.47160 * 186.05555 * 8 7 5 10 10 C 1.50706 * 115.54744 * 65.07280 * 9 8 7 11 11 H 1.08000 * 119.99757 * 264.89186 * 10 9 8 12 12 C 1.37869 * 119.99913 * 84.89973 * 10 9 8 13 13 N 1.31520 * 120.00267 * 351.15130 * 12 10 9 14 14 Si 1.86798 * 120.00079 * 171.15609 * 12 10 9 15 15 H 1.48503 * 109.47185 * 89.99557 * 14 12 10 16 16 H 1.48504 * 109.47476 * 209.99381 * 14 12 10 17 17 H 1.48496 * 109.47171 * 329.99512 * 14 12 10 18 18 C 1.52995 * 117.49814 * 279.40186 * 9 8 7 19 19 C 1.52997 * 117.49743 * 210.74068 * 9 8 7 20 20 C 1.51364 * 105.16631 * 333.65259 * 5 4 2 21 21 C 1.38181 * 109.77463 * 17.19381 * 20 5 4 22 22 C 1.38672 * 119.87106 * 180.02562 * 21 20 5 23 23 F 1.35101 * 119.86301 * 179.97438 * 22 21 20 24 24 C 1.38366 * 120.27620 * 0.02679 * 22 21 20 25 25 C 1.38125 * 119.97193 * 359.97386 * 24 22 21 26 26 C 1.38614 * 119.89894 * 359.97438 * 25 24 22 27 27 O 1.35951 * 119.92512 * 180.02562 * 26 25 24 28 28 H 1.08995 * 109.46891 * 180.66963 * 1 2 3 29 29 H 1.08999 * 109.46925 * 300.66801 * 1 2 3 30 30 H 1.09001 * 109.46838 * 60.66776 * 1 2 3 31 31 H 1.09000 * 110.82697 * 27.03618 * 4 2 1 32 32 H 1.09010 * 110.99059 * 263.56590 * 4 2 1 33 33 H 1.00894 * 111.00070 * 281.76276 * 7 5 4 34 34 H 1.09004 * 109.47065 * 306.05618 * 8 7 5 35 35 H 1.08998 * 109.46765 * 66.05573 * 8 7 5 36 36 H 0.97001 * 120.00489 * 180.02562 * 13 12 10 37 37 H 1.09000 * 117.49998 * 0.02562 * 18 9 8 38 38 H 1.09005 * 117.49651 * 145.02308 * 18 9 8 39 39 H 1.09003 * 117.50075 * 214.97735 * 19 9 8 40 40 H 1.08992 * 117.50126 * 359.97438 * 19 9 8 41 41 H 1.08008 * 120.01399 * 179.70362 * 24 22 21 42 42 H 1.08001 * 120.04947 * 179.97438 * 25 24 22 43 43 H 0.96701 * 113.99867 * 270.00211 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9091 1.0220 0.0000 4 6 2.0656 -0.7699 1.2258 5 6 3.3423 -1.4338 0.6680 6 1 3.4916 -2.4127 1.1236 7 7 4.5103 -0.5763 0.9101 8 6 5.7527 -1.3598 0.8857 9 6 6.9272 -0.4661 1.2892 10 6 6.8963 0.0476 2.7057 11 1 6.4829 1.0226 2.9176 12 6 7.3960 -0.7270 3.7309 13 7 7.7383 -1.9765 3.5045 14 14 7.5866 -0.0019 5.4419 15 1 6.3385 -0.2235 6.2154 16 1 8.7223 -0.6612 6.1353 17 1 7.8506 1.4556 5.3352 18 6 7.5167 0.4526 0.2172 19 6 8.2956 -0.7807 0.6815 20 6 3.0963 -1.5786 -0.8185 21 6 2.0553 -0.7550 -1.2024 22 6 1.6526 -0.7236 -2.5290 23 9 0.6344 0.0814 -2.9041 24 6 2.2884 -1.5140 -3.4699 25 6 3.3292 -2.3383 -3.0889 26 6 3.7350 -2.3712 -1.7639 27 8 4.7597 -3.1819 -1.3883 28 1 -0.3633 -1.0276 0.0120 29 1 -0.3633 0.5242 0.8839 30 1 -0.3633 0.5034 -0.8959 31 1 1.3490 -1.5229 1.5539 32 1 2.3080 -0.0873 2.0404 33 1 4.5472 0.1809 0.2444 34 1 5.6717 -2.1914 1.5857 35 1 5.9189 -1.7461 -0.1199 36 1 8.0895 -2.5216 4.2259 37 1 7.0676 0.4207 -0.7754 38 1 7.8827 1.4285 0.5365 39 1 9.1737 -0.6156 1.3060 40 1 8.3593 -1.6245 -0.0054 41 1 1.9681 -1.4899 -4.5012 42 1 3.8262 -2.9561 -3.8222 43 1 4.4819 -4.0684 -1.1201 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797586927.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:04:25 Heat of formation + Delta-G solvation = -39.281750 kcal Electronic energy + Delta-G solvation = -25709.023503 eV Core-core repulsion = 22055.166234 eV Total energy + Delta-G solvation = -3653.857269 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.89701 -40.56278 -37.61134 -36.80238 -35.61923 -33.42091 -31.77152 -30.21463 -29.19397 -28.12622 -25.57810 -24.47620 -23.62743 -22.59490 -21.20953 -20.88862 -20.10256 -18.90032 -17.91696 -17.28933 -16.68663 -16.12596 -15.86131 -15.28892 -14.82605 -14.67267 -14.38566 -14.32634 -13.80270 -13.73730 -13.39500 -13.21388 -12.86588 -12.55468 -12.29248 -12.21960 -11.84291 -11.67023 -11.47490 -11.21126 -11.11981 -10.89419 -10.81639 -10.58824 -10.52427 -10.37217 -10.34530 -10.08773 -9.36918 -8.93227 -8.67731 -8.45297 -8.29749 -7.97569 -7.49296 -5.89946 -3.89975 1.01029 1.08403 3.34965 3.37464 3.43955 3.48286 4.14061 4.21287 4.34619 4.47987 4.52616 4.81674 4.89080 5.04738 5.08259 5.26504 5.39585 5.40970 5.52253 5.56016 5.67838 5.76479 5.82899 5.90245 5.94057 6.05824 6.08999 6.21395 6.25404 6.33242 6.35029 6.44959 6.52148 6.67876 6.73811 6.79223 6.85084 6.99180 7.20303 7.54156 7.68301 7.70272 8.00202 8.03491 8.17921 8.64307 9.08376 9.72221 11.19991 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.018110 B = 0.004438 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.723202 B = 6307.240493 C = 7112.670410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.050 4.050 3 H 0.091 0.909 4 C -0.106 4.106 5 C 0.131 3.869 6 H 0.086 0.914 7 N -0.646 5.646 8 C 0.104 3.896 9 C 0.054 3.946 10 C -0.469 4.469 11 H 0.058 0.942 12 C 0.068 3.932 13 N -0.885 5.885 14 Si 0.885 3.115 15 H -0.282 1.282 16 H -0.289 1.289 17 H -0.276 1.276 18 C -0.217 4.217 19 C -0.159 4.159 20 C -0.121 4.121 21 C -0.104 4.104 22 C 0.096 3.904 23 F -0.141 7.141 24 C -0.142 4.142 25 C -0.124 4.124 26 C 0.118 3.882 27 O -0.485 6.485 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.330 0.670 34 H 0.074 0.926 35 H 0.018 0.982 36 H 0.256 0.744 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.352 -2.058 -11.284 17.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.068 4.068 3 H 0.109 0.891 4 C -0.144 4.144 5 C 0.020 3.980 6 H 0.104 0.896 7 N -0.273 5.273 8 C -0.025 4.025 9 C 0.053 3.947 10 C -0.507 4.507 11 H 0.076 0.924 12 C -0.133 4.133 13 N -0.523 5.523 14 Si 0.713 3.287 15 H -0.208 1.208 16 H -0.215 1.215 17 H -0.201 1.201 18 C -0.254 4.254 19 C -0.197 4.197 20 C -0.124 4.124 21 C -0.105 4.105 22 C 0.077 3.923 23 F -0.120 7.120 24 C -0.161 4.161 25 C -0.143 4.143 26 C 0.072 3.928 27 O -0.295 6.295 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.147 0.853 34 H 0.092 0.908 35 H 0.036 0.964 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.155 0.845 42 H 0.155 0.845 43 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -12.995 -1.731 -10.593 16.854 hybrid contribution -0.049 -0.225 -0.223 0.321 sum -13.043 -1.956 -10.816 17.057 Atomic orbital electron populations 1.21840 0.94249 1.01978 1.02231 1.20706 0.95845 0.99276 0.90978 0.89084 1.22468 0.95322 0.99626 0.97007 1.21087 0.92749 0.97819 0.86297 0.89617 1.60657 1.01729 1.10996 1.53918 1.21660 0.87707 0.95747 0.97345 1.18843 0.89200 0.94561 0.92076 1.20307 1.38941 1.02083 0.89372 0.92390 1.24913 0.95555 0.94643 0.98232 1.70021 1.43887 1.06225 1.32123 0.86716 0.77505 0.79361 0.85073 1.20840 1.21523 1.20063 1.22971 1.08660 0.95264 0.98511 1.22506 0.98289 0.96222 1.02712 1.21918 0.94462 0.96627 0.99376 1.20587 0.97579 0.99347 0.93020 1.17293 0.88911 0.94115 0.92017 1.91449 1.57264 1.71347 1.91933 1.20847 0.97699 0.98124 0.99429 1.21143 0.96852 1.00539 0.95765 1.18135 0.89212 0.94422 0.91036 1.84983 1.30191 1.26968 1.87319 0.92683 0.91986 0.92226 0.90981 0.88630 0.85280 0.90794 0.96393 0.93433 0.92323 0.90697 0.90315 0.92101 0.84509 0.84511 0.75704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.91 37.16 0.33 -1.22 16 2 C -0.05 -0.63 3.46 -90.73 -0.31 -0.94 16 3 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 4 C -0.11 -1.42 6.29 -25.32 -0.16 -1.58 16 5 C 0.13 2.07 3.12 -67.84 -0.21 1.85 16 6 H 0.09 1.40 7.76 -51.93 -0.40 1.00 16 7 N -0.65 -12.40 6.15 -106.85 -0.66 -13.05 16 8 C 0.10 2.29 5.33 -3.82 -0.02 2.27 16 9 C 0.05 1.33 1.53 -155.66 -0.24 1.09 16 10 C -0.47 -12.80 8.73 -34.44 -0.30 -13.10 16 11 H 0.06 1.61 7.83 -52.49 -0.41 1.20 16 12 C 0.07 1.88 5.37 -17.82 -0.10 1.78 16 13 N -0.88 -25.11 13.02 55.43 0.72 -24.39 16 14 Si 0.89 21.41 29.55 -169.99 -5.02 16.39 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 C -0.22 -4.88 9.96 -26.70 -0.27 -5.14 16 19 C -0.16 -3.84 9.52 -26.69 -0.25 -4.10 16 20 C -0.12 -1.74 5.40 -104.06 -0.56 -2.31 16 21 C -0.10 -1.40 5.60 -104.15 -0.58 -1.98 16 22 C 0.10 1.24 7.19 -39.37 -0.28 0.96 16 23 F -0.14 -1.83 15.62 2.25 0.04 -1.79 16 24 C -0.14 -1.62 10.02 -39.58 -0.40 -2.01 16 25 C -0.12 -1.46 9.98 -39.48 -0.39 -1.85 16 26 C 0.12 1.61 6.62 -39.19 -0.26 1.35 16 27 O -0.48 -6.70 11.47 -19.59 -0.22 -6.93 16 28 H 0.05 0.57 8.13 -51.93 -0.42 0.15 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.64 6.69 -51.93 -0.35 0.29 16 31 H 0.07 0.85 7.90 -51.93 -0.41 0.44 16 32 H 0.10 1.37 8.08 -51.92 -0.42 0.95 16 33 H 0.33 6.29 8.55 -39.30 -0.34 5.96 16 34 H 0.07 1.84 7.93 -51.93 -0.41 1.42 16 35 H 0.02 0.39 5.99 -51.93 -0.31 0.08 16 36 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.07 1.68 8.14 -51.93 -0.42 1.25 16 39 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 40 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 41 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 42 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 43 H 0.39 3.59 9.06 45.56 0.41 4.01 16 LS Contribution 355.35 15.07 5.36 5.36 Total: -1.00 -29.78 355.35 -9.38 -39.15 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -5.58 Total: 10.19 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: -4.01 Total: -24.93 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.06 Total: -37.44 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.22 Total: -6.93 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.78 -9.38 -39.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797586927.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.127 kcal (2) G-P(sol) polarization free energy of solvation -29.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds