Wall clock time and date at job start Tue Mar 31 2020 09:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 110.27115 * 2 1 4 4 C 1.54347 * 110.30040 * 237.81829 * 2 1 3 5 5 C 1.54348 * 102.38679 * 214.73647 * 4 2 1 6 6 H 1.09001 * 110.38297 * 267.37909 * 5 4 2 7 7 N 1.46894 * 110.30452 * 145.26368 * 5 4 2 8 8 C 1.46900 * 111.00108 * 86.10802 * 7 5 4 9 9 C 1.52997 * 109.47238 * 174.77046 * 8 7 5 10 10 C 1.50693 * 115.55190 * 294.94831 * 9 8 7 11 11 H 1.08004 * 120.00312 * 95.21383 * 10 9 8 12 12 C 1.37877 * 119.99898 * 275.21644 * 10 9 8 13 13 N 1.31513 * 119.99918 * 5.23070 * 12 10 9 14 14 Si 1.86805 * 119.99870 * 185.23278 * 12 10 9 15 15 H 1.48500 * 109.47296 * 60.00204 * 14 12 10 16 16 H 1.48504 * 109.46868 * 179.97438 * 14 12 10 17 17 H 1.48491 * 109.47281 * 299.99930 * 14 12 10 18 18 C 1.53003 * 117.49775 * 80.61636 * 9 8 7 19 19 C 1.53004 * 117.49785 * 149.27764 * 9 8 7 20 20 C 1.51368 * 105.16598 * 26.33617 * 5 4 2 21 21 C 1.38169 * 109.77591 * 342.82125 * 20 5 4 22 22 C 1.38678 * 119.87328 * 179.97438 * 21 20 5 23 23 F 1.35101 * 119.86485 * 180.02562 * 22 21 20 24 24 C 1.38367 * 120.27737 * 359.97438 * 22 21 20 25 25 C 1.38130 * 119.96618 * 0.02562 * 24 22 21 26 26 C 1.38620 * 119.90129 * 0.02562 * 25 24 22 27 27 O 1.35941 * 119.92390 * 180.02562 * 26 25 24 28 28 H 1.09003 * 109.46708 * 299.38054 * 1 2 3 29 29 H 1.08997 * 109.47402 * 59.37689 * 1 2 3 30 30 H 1.08997 * 109.47603 * 179.38280 * 1 2 3 31 31 H 1.09001 * 110.82450 * 96.51056 * 4 2 1 32 32 H 1.09006 * 110.82456 * 332.95884 * 4 2 1 33 33 H 1.00897 * 111.00177 * 322.14650 * 7 5 4 34 34 H 1.08998 * 109.47251 * 54.76715 * 8 7 5 35 35 H 1.09006 * 109.46521 * 294.76746 * 8 7 5 36 36 H 0.97006 * 119.99680 * 180.02562 * 13 12 10 37 37 H 1.09000 * 117.50223 * 214.99855 * 18 9 8 38 38 H 1.08999 * 117.50128 * 0.02732 * 18 9 8 39 39 H 1.08996 * 117.49730 * 359.97101 * 19 9 8 40 40 H 1.08995 * 117.49874 * 145.00023 * 19 9 8 41 41 H 1.07990 * 120.01641 * 179.97438 * 24 22 21 42 42 H 1.07998 * 120.04418 * 180.02562 * 25 24 22 43 43 H 0.96710 * 114.00117 * 269.94416 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9076 1.0224 0.0000 4 6 2.0655 -0.7710 -1.2252 5 6 3.3423 -1.4345 -0.6667 6 1 4.2099 -0.7998 -0.8470 7 7 3.5409 -2.7544 -1.2801 8 6 4.2708 -2.6404 -2.5498 9 6 4.5722 -4.0389 -3.0922 10 6 5.5069 -4.8732 -2.2549 11 1 5.1083 -5.5759 -1.5381 12 6 6.8711 -4.7396 -2.4039 13 7 7.3579 -3.8133 -3.2005 14 14 8.0278 -5.8742 -1.4743 15 1 7.7605 -7.2818 -1.8650 16 1 9.4333 -5.5276 -1.8055 17 1 7.8092 -5.7158 -0.0142 18 6 3.4490 -4.7660 -3.8343 19 6 4.6438 -4.2072 -4.6113 20 6 3.0963 -1.5777 0.8199 21 6 2.0553 -0.7539 1.2030 22 6 1.6526 -0.7212 2.5297 23 9 0.6344 0.0839 2.9040 24 6 2.2886 -1.5106 3.4715 25 6 3.3295 -2.3351 3.0911 26 6 3.7352 -2.3693 1.7661 27 8 4.7593 -3.1809 1.3912 28 1 -0.3633 0.5042 0.8955 29 1 -0.3634 0.5235 -0.8843 30 1 -0.3634 -1.0275 -0.0111 31 1 2.3083 -0.0865 -2.0380 32 1 1.3488 -1.5243 -1.5526 33 1 2.6600 -3.2287 -1.4107 34 1 5.2060 -2.1054 -2.3846 35 1 3.6624 -2.0944 -3.2709 36 1 8.3177 -3.7195 -3.3057 37 1 3.3862 -5.8479 -3.7169 38 1 2.4955 -4.2479 -3.9365 39 1 4.4756 -3.3217 -5.2242 40 1 5.3669 -4.9214 -5.0050 41 1 1.9718 -1.4815 4.5035 42 1 3.8266 -2.9520 3.8251 43 1 5.6304 -2.7637 1.4410 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797586928.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:04:27 Heat of formation + Delta-G solvation = -36.300961 kcal Electronic energy + Delta-G solvation = -25605.453914 eV Core-core repulsion = 21951.725902 eV Total energy + Delta-G solvation = -3653.728012 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.81444 -40.36809 -37.50190 -36.73634 -35.47536 -33.48345 -31.76193 -30.37490 -28.97303 -27.87940 -25.64854 -24.75589 -23.20197 -22.57066 -21.14421 -20.72736 -20.28547 -18.97801 -17.74847 -17.23289 -16.54604 -15.96513 -15.65326 -15.07186 -14.90853 -14.66145 -14.35101 -14.18310 -13.96073 -13.55511 -13.35446 -13.04012 -12.79630 -12.60001 -12.31792 -12.20731 -11.83087 -11.79248 -11.34136 -11.29692 -11.11875 -10.92877 -10.85270 -10.68380 -10.56131 -10.41318 -10.14455 -10.08444 -9.38599 -8.75041 -8.70720 -8.30593 -8.23370 -7.99560 -7.44675 -5.88688 -3.88682 1.18504 1.22083 3.40449 3.43778 3.48793 3.50679 4.25028 4.36092 4.48003 4.53939 4.56134 4.80230 4.91376 5.02690 5.17457 5.36388 5.38013 5.41734 5.43913 5.51511 5.62691 5.72999 5.79674 5.87320 5.93801 6.06409 6.13150 6.19225 6.21153 6.26858 6.30217 6.40656 6.54063 6.56131 6.66526 6.78639 6.84592 6.93221 7.16336 7.52156 7.62805 7.98536 8.05200 8.13504 8.19284 8.63465 9.10321 9.73720 11.21305 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.016999 B = 0.004705 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.795214 B = 5949.294501 C = 7176.054776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.044 4.044 3 H 0.086 0.914 4 C -0.146 4.146 5 C 0.131 3.869 6 H 0.092 0.908 7 N -0.646 5.646 8 C 0.110 3.890 9 C 0.055 3.945 10 C -0.459 4.459 11 H 0.059 0.941 12 C 0.067 3.933 13 N -0.890 5.890 14 Si 0.887 3.113 15 H -0.281 1.281 16 H -0.292 1.292 17 H -0.276 1.276 18 C -0.217 4.217 19 C -0.159 4.159 20 C -0.076 4.076 21 C -0.116 4.116 22 C 0.089 3.911 23 F -0.145 7.145 24 C -0.141 4.141 25 C -0.132 4.132 26 C 0.142 3.858 27 O -0.465 6.465 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.332 0.668 34 H 0.075 0.925 35 H -0.007 1.007 36 H 0.256 0.744 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.881 8.768 9.085 16.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.063 4.063 3 H 0.104 0.896 4 C -0.186 4.186 5 C 0.020 3.980 6 H 0.110 0.890 7 N -0.274 5.274 8 C -0.018 4.018 9 C 0.054 3.946 10 C -0.497 4.497 11 H 0.077 0.923 12 C -0.134 4.134 13 N -0.529 5.529 14 Si 0.715 3.285 15 H -0.207 1.207 16 H -0.218 1.218 17 H -0.201 1.201 18 C -0.254 4.254 19 C -0.197 4.197 20 C -0.078 4.078 21 C -0.118 4.118 22 C 0.070 3.930 23 F -0.123 7.123 24 C -0.160 4.160 25 C -0.151 4.151 26 C 0.096 3.904 27 O -0.274 6.274 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.150 0.850 34 H 0.093 0.907 35 H 0.011 0.989 36 H 0.065 0.935 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.153 0.847 42 H 0.155 0.845 43 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -9.587 8.293 9.283 15.711 hybrid contribution 0.232 0.245 0.073 0.345 sum -9.355 8.539 9.356 15.747 Atomic orbital electron populations 1.21853 0.94222 1.02264 1.02081 1.20564 0.96069 0.98594 0.91069 0.89582 1.23249 0.98299 1.00050 0.96963 1.20983 0.96380 0.92120 0.88552 0.89010 1.60204 1.24601 1.14914 1.27711 1.21562 0.95972 0.97599 0.86699 1.18818 0.94050 0.91701 0.90042 1.20250 0.89358 1.20270 1.19821 0.92312 1.24894 0.98007 0.95216 0.95260 1.70003 1.12233 1.32471 1.38167 0.86751 0.79680 0.81404 0.80625 1.20664 1.21800 1.20134 1.22987 0.92393 0.99356 1.10665 1.22518 0.99094 1.00922 0.97178 1.20898 0.95508 0.94614 0.96757 1.20469 0.98170 1.00191 0.92921 1.17196 0.89244 0.94590 0.91958 1.91431 1.57324 1.71578 1.91995 1.20815 0.97857 0.98077 0.99279 1.21238 0.98476 0.99703 0.95633 1.18147 0.92079 0.90280 0.89853 1.85010 1.16176 1.37496 1.88722 0.92058 0.92275 0.92445 0.90494 0.90586 0.84988 0.90668 0.98904 0.93461 0.90613 0.92312 0.92283 0.90129 0.84728 0.84540 0.75623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.91 37.16 0.33 -1.26 16 2 C -0.04 -0.53 3.46 -90.73 -0.31 -0.85 16 3 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 4 C -0.15 -1.89 6.17 -25.32 -0.16 -2.05 16 5 C 0.13 2.03 3.11 -67.83 -0.21 1.82 16 6 H 0.09 1.47 7.78 -51.93 -0.40 1.07 16 7 N -0.65 -12.10 5.76 -106.85 -0.62 -12.71 16 8 C 0.11 2.34 5.39 -3.83 -0.02 2.32 16 9 C 0.05 1.31 1.54 -155.66 -0.24 1.07 16 10 C -0.46 -12.31 8.74 -34.44 -0.30 -12.61 16 11 H 0.06 1.64 7.82 -52.48 -0.41 1.23 16 12 C 0.07 1.82 5.40 -17.82 -0.10 1.72 16 13 N -0.89 -24.82 12.91 55.43 0.72 -24.10 16 14 Si 0.89 21.25 29.54 -169.99 -5.02 16.22 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 C -0.22 -4.68 9.96 -26.69 -0.27 -4.95 16 19 C -0.16 -3.71 9.42 -26.69 -0.25 -3.96 16 20 C -0.08 -1.15 5.77 -104.07 -0.60 -1.75 16 21 C -0.12 -1.59 5.60 -104.15 -0.58 -2.17 16 22 C 0.09 1.18 7.19 -39.37 -0.28 0.90 16 23 F -0.14 -1.89 15.62 2.25 0.04 -1.86 16 24 C -0.14 -1.69 10.02 -39.57 -0.40 -2.09 16 25 C -0.13 -1.68 9.98 -39.48 -0.39 -2.07 16 26 C 0.14 2.16 6.69 -39.19 -0.26 1.89 16 27 O -0.46 -7.84 13.05 -19.56 -0.26 -8.10 16 28 H 0.06 0.66 6.69 -51.93 -0.35 0.32 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.08 1.00 7.41 -51.93 -0.38 0.61 16 33 H 0.33 6.14 8.25 -39.29 -0.32 5.82 16 34 H 0.07 1.79 7.95 -51.93 -0.41 1.37 16 35 H -0.01 -0.14 8.09 -51.93 -0.42 -0.56 16 36 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 41 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 43 H 0.39 5.23 9.07 45.56 0.41 5.64 16 LS Contribution 358.17 15.07 5.40 5.40 Total: -1.00 -29.03 358.17 -9.44 -38.47 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -5.65 Total: 10.72 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -4.05 Total: -24.05 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.10 Total: -36.82 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: -0.26 Total: -8.10 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.03 -9.44 -38.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797586928.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.168 kcal (2) G-P(sol) polarization free energy of solvation -29.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds