Wall clock time and date at job start Tue Mar 31 2020 09:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 110.27115 * 2 1 4 4 C 1.54347 * 110.30040 * 237.81829 * 2 1 3 5 5 C 1.54348 * 102.38679 * 214.73647 * 4 2 1 6 6 H 1.09001 * 110.38297 * 267.37909 * 5 4 2 7 7 N 1.46894 * 110.30452 * 145.26368 * 5 4 2 8 8 C 1.46900 * 111.00108 * 86.10802 * 7 5 4 9 9 C 1.52997 * 109.47238 * 174.77046 * 8 7 5 10 10 C 1.50693 * 115.55190 * 294.94831 * 9 8 7 11 11 H 1.08004 * 120.00312 * 95.21383 * 10 9 8 12 12 C 1.37877 * 119.99898 * 275.21644 * 10 9 8 13 13 N 1.31513 * 119.99918 * 5.23070 * 12 10 9 14 14 Si 1.86805 * 119.99870 * 185.23278 * 12 10 9 15 15 H 1.48500 * 109.47296 * 60.00204 * 14 12 10 16 16 H 1.48504 * 109.46868 * 179.97438 * 14 12 10 17 17 H 1.48491 * 109.47281 * 299.99930 * 14 12 10 18 18 C 1.53003 * 117.49775 * 80.61636 * 9 8 7 19 19 C 1.53004 * 117.49785 * 149.27764 * 9 8 7 20 20 C 1.51368 * 105.16598 * 26.33617 * 5 4 2 21 21 C 1.38169 * 109.77591 * 342.82125 * 20 5 4 22 22 C 1.38678 * 119.87328 * 179.97438 * 21 20 5 23 23 F 1.35101 * 119.86485 * 180.02562 * 22 21 20 24 24 C 1.38367 * 120.27737 * 359.97438 * 22 21 20 25 25 C 1.38130 * 119.96618 * 0.02562 * 24 22 21 26 26 C 1.38620 * 119.90129 * 0.02562 * 25 24 22 27 27 O 1.35941 * 119.92390 * 180.02562 * 26 25 24 28 28 H 1.09003 * 109.46708 * 299.38054 * 1 2 3 29 29 H 1.08997 * 109.47402 * 59.37689 * 1 2 3 30 30 H 1.08997 * 109.47603 * 179.38280 * 1 2 3 31 31 H 1.09001 * 110.82450 * 96.51056 * 4 2 1 32 32 H 1.09006 * 110.82456 * 332.95884 * 4 2 1 33 33 H 1.00897 * 111.00177 * 322.14650 * 7 5 4 34 34 H 1.08998 * 109.47251 * 54.76715 * 8 7 5 35 35 H 1.09006 * 109.46521 * 294.76746 * 8 7 5 36 36 H 0.97006 * 119.99680 * 180.02562 * 13 12 10 37 37 H 1.09000 * 117.50223 * 214.99855 * 18 9 8 38 38 H 1.08999 * 117.50128 * 0.02732 * 18 9 8 39 39 H 1.08996 * 117.49730 * 359.97101 * 19 9 8 40 40 H 1.08995 * 117.49874 * 145.00023 * 19 9 8 41 41 H 1.07990 * 120.01641 * 179.97438 * 24 22 21 42 42 H 1.07998 * 120.04418 * 180.02562 * 25 24 22 43 43 H 0.96710 * 114.00117 * 269.94416 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9076 1.0224 0.0000 4 6 2.0655 -0.7710 -1.2252 5 6 3.3423 -1.4345 -0.6667 6 1 4.2099 -0.7998 -0.8470 7 7 3.5409 -2.7544 -1.2801 8 6 4.2708 -2.6404 -2.5498 9 6 4.5722 -4.0389 -3.0922 10 6 5.5069 -4.8732 -2.2549 11 1 5.1083 -5.5759 -1.5381 12 6 6.8711 -4.7396 -2.4039 13 7 7.3579 -3.8133 -3.2005 14 14 8.0278 -5.8742 -1.4743 15 1 7.7605 -7.2818 -1.8650 16 1 9.4333 -5.5276 -1.8055 17 1 7.8092 -5.7158 -0.0142 18 6 3.4490 -4.7660 -3.8343 19 6 4.6438 -4.2072 -4.6113 20 6 3.0963 -1.5777 0.8199 21 6 2.0553 -0.7539 1.2030 22 6 1.6526 -0.7212 2.5297 23 9 0.6344 0.0839 2.9040 24 6 2.2886 -1.5106 3.4715 25 6 3.3295 -2.3351 3.0911 26 6 3.7352 -2.3693 1.7661 27 8 4.7593 -3.1809 1.3912 28 1 -0.3633 0.5042 0.8955 29 1 -0.3634 0.5235 -0.8843 30 1 -0.3634 -1.0275 -0.0111 31 1 2.3083 -0.0865 -2.0380 32 1 1.3488 -1.5243 -1.5526 33 1 2.6600 -3.2287 -1.4107 34 1 5.2060 -2.1054 -2.3846 35 1 3.6624 -2.0944 -3.2709 36 1 8.3177 -3.7195 -3.3057 37 1 3.3862 -5.8479 -3.7169 38 1 2.4955 -4.2479 -3.9365 39 1 4.4756 -3.3217 -5.2242 40 1 5.3669 -4.9214 -5.0050 41 1 1.9718 -1.4815 4.5035 42 1 3.8266 -2.9520 3.8251 43 1 5.6304 -2.7637 1.4410 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797586928.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:04:27 Heat of formation + Delta-G solvation = -53.156507 kcal Electronic energy + Delta-G solvation = -25606.184825 eV Core-core repulsion = 21951.725902 eV Total energy + Delta-G solvation = -3654.458924 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.82835 -41.45783 -38.88792 -38.24041 -36.68418 -34.79994 -33.81296 -31.47911 -30.06962 -28.99288 -27.54307 -26.22846 -24.48942 -23.63475 -22.86703 -21.92192 -21.37021 -20.84921 -18.92449 -18.41674 -17.77351 -17.57375 -16.70705 -16.55690 -16.16715 -16.07213 -16.01121 -15.31915 -15.17960 -15.01337 -14.64541 -14.53888 -13.90993 -13.78919 -13.53403 -13.39518 -13.33392 -12.96194 -12.82729 -12.80145 -12.59928 -12.53563 -12.29570 -12.19757 -11.98472 -11.95448 -11.69087 -11.31547 -11.17208 -10.69428 -10.30677 -9.89378 -9.71734 -9.30661 -8.89731 -7.96743 -6.01055 0.12886 0.18678 1.47218 1.47403 1.55051 2.45728 2.53468 3.21370 3.25999 3.33784 3.39985 3.49198 3.54237 3.73385 3.92429 4.02311 4.13879 4.30021 4.40547 4.42884 4.47473 4.58426 4.62518 4.75714 4.78059 4.83600 4.87246 4.87701 4.98811 5.02331 5.08462 5.13264 5.14740 5.20427 5.26113 5.32079 5.35050 5.52105 5.67737 5.81432 5.83594 5.94916 6.43940 6.58090 6.78081 7.00292 7.01619 7.63246 9.12043 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.016999 B = 0.004705 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.795214 B = 5949.294501 C = 7176.054776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.042 4.042 3 H 0.098 0.902 4 C -0.137 4.137 5 C 0.130 3.870 6 H 0.079 0.921 7 N -0.656 5.656 8 C 0.130 3.870 9 C 0.029 3.971 10 C -0.467 4.467 11 H 0.041 0.959 12 C 0.027 3.973 13 N -0.913 5.913 14 Si 0.939 3.061 15 H -0.281 1.281 16 H -0.289 1.289 17 H -0.272 1.272 18 C -0.192 4.192 19 C -0.165 4.165 20 C -0.097 4.097 21 C -0.117 4.117 22 C 0.082 3.918 23 F -0.143 7.143 24 C -0.131 4.131 25 C -0.129 4.129 26 C 0.121 3.879 27 O -0.490 6.490 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.050 0.950 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.333 0.667 34 H 0.042 0.958 35 H 0.008 0.992 36 H 0.254 0.746 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.165 0.835 42 H 0.156 0.844 43 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.449 9.466 10.187 18.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.060 4.060 3 H 0.116 0.884 4 C -0.176 4.176 5 C 0.020 3.980 6 H 0.097 0.903 7 N -0.285 5.285 8 C 0.001 3.999 9 C 0.028 3.972 10 C -0.505 4.505 11 H 0.059 0.941 12 C -0.172 4.172 13 N -0.553 5.553 14 Si 0.767 3.233 15 H -0.207 1.207 16 H -0.215 1.215 17 H -0.198 1.198 18 C -0.229 4.229 19 C -0.203 4.203 20 C -0.099 4.099 21 C -0.119 4.119 22 C 0.063 3.937 23 F -0.121 7.121 24 C -0.149 4.149 25 C -0.147 4.147 26 C 0.076 3.924 27 O -0.301 6.301 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.152 0.848 34 H 0.061 0.939 35 H 0.026 0.974 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.182 0.818 42 H 0.174 0.826 43 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -11.167 8.997 10.397 17.712 hybrid contribution 0.692 0.026 -0.215 0.725 sum -10.475 9.023 10.182 17.170 Atomic orbital electron populations 1.21812 0.93042 1.02090 1.02958 1.20603 0.96948 0.98723 0.89750 0.88422 1.23153 0.96736 1.00105 0.97638 1.20982 0.97330 0.90559 0.89125 0.90270 1.60068 1.24687 1.17238 1.26460 1.21149 0.95111 0.95575 0.88058 1.18955 0.95171 0.93107 0.89984 1.20392 0.90224 1.20226 1.19690 0.94095 1.25446 0.99232 0.96361 0.96120 1.70096 1.12203 1.33611 1.39376 0.85915 0.78071 0.79658 0.79677 1.20738 1.21516 1.19766 1.22963 0.92809 0.99167 1.07974 1.22427 0.99735 1.01099 0.97069 1.20886 0.96670 0.95938 0.96360 1.20633 0.97624 0.99844 0.93765 1.17344 0.89445 0.94882 0.92060 1.91438 1.57217 1.71541 1.91928 1.21134 0.96693 0.96617 1.00492 1.21411 0.98544 0.99807 0.94946 1.18455 0.92057 0.90823 0.91062 1.84967 1.17180 1.38777 1.89174 0.91981 0.90596 0.93133 0.89429 0.90539 0.84833 0.93905 0.97442 0.93695 0.91084 0.89362 0.90989 0.92660 0.81781 0.82630 0.74762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 8.91 71.98 0.64 -2.08 16 2 C -0.04 -0.92 3.46 -10.87 -0.04 -0.96 16 3 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 4 C -0.14 -3.33 6.17 31.51 0.19 -3.14 16 5 C 0.13 4.03 3.11 44.84 0.14 4.17 16 6 H 0.08 2.60 7.78 -2.39 -0.02 2.58 16 7 N -0.66 -24.57 5.76 -491.98 -2.84 -27.40 16 8 C 0.13 5.54 5.39 86.30 0.47 6.01 16 9 C 0.03 1.37 1.54 -52.93 -0.08 1.29 16 10 C -0.47 -25.47 8.74 25.60 0.22 -25.24 16 11 H 0.04 2.33 7.82 -2.91 -0.02 2.31 16 12 C 0.03 1.47 5.40 84.65 0.46 1.93 16 13 N -0.91 -51.87 12.91 21.45 0.28 -51.59 16 14 Si 0.94 44.23 29.54 68.60 2.03 46.26 16 15 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 16 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 17 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 18 C -0.19 -8.08 9.96 30.62 0.30 -7.78 16 19 C -0.17 -7.69 9.42 30.62 0.29 -7.40 16 20 C -0.10 -2.88 5.77 -19.50 -0.11 -3.00 16 21 C -0.12 -3.03 5.60 -19.56 -0.11 -3.14 16 22 C 0.08 1.99 7.19 22.41 0.16 2.15 16 23 F -0.14 -3.37 15.62 44.97 0.70 -2.67 16 24 C -0.13 -2.80 10.02 22.27 0.22 -2.57 16 25 C -0.13 -3.06 9.98 22.34 0.22 -2.84 16 26 C 0.12 3.63 6.69 22.53 0.15 3.78 16 27 O -0.49 -16.83 13.05 -92.89 -1.21 -18.04 16 28 H 0.06 1.19 6.69 -2.39 -0.02 1.17 16 29 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.05 1.04 8.13 -2.39 -0.02 1.02 16 31 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.08 1.87 7.41 -2.38 -0.02 1.85 16 33 H 0.33 12.14 8.25 -89.70 -0.74 11.41 16 34 H 0.04 2.09 7.95 -2.39 -0.02 2.07 16 35 H 0.01 0.30 8.09 -2.38 -0.02 0.28 16 36 H 0.25 13.99 8.31 -92.70 -0.77 13.22 16 37 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 38 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 39 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 40 H 0.05 2.82 8.14 -2.39 -0.02 2.80 16 41 H 0.16 2.50 8.06 -2.92 -0.02 2.48 16 42 H 0.16 3.03 8.06 -2.91 -0.02 3.00 16 43 H 0.40 11.13 9.07 -74.05 -0.67 10.46 16 Total: -1.00 -62.07 358.17 1.71 -60.36 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: -0.38 Total: 31.90 kcal Atomic # 6 Polarization: -41.95 SS G_CDS: 3.13 Total: -38.82 kcal Atomic # 7 Polarization: -76.44 SS G_CDS: -2.56 Total: -79.00 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -1.21 Total: -18.04 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.70 Total: -2.67 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -62.07 1.71 -60.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797586928.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.202 kcal (2) G-P(sol) polarization free energy of solvation -62.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds