Wall clock time and date at job start Tue Mar 31 2020 08:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47286 * 2 1 4 4 N 1.46504 * 109.46839 * 65.00307 * 3 2 1 5 5 C 1.34779 * 120.00023 * 180.02562 * 4 3 2 6 6 O 1.21285 * 119.99769 * 359.97438 * 5 4 3 7 7 C 1.50691 * 120.00271 * 179.97438 * 5 4 3 8 8 C 1.50699 * 109.47261 * 179.97438 * 7 5 4 9 9 C 1.38229 * 120.00230 * 270.27992 * 8 7 5 10 10 C 1.38238 * 120.00124 * 180.28369 * 9 8 7 11 11 C 1.38234 * 119.99675 * 359.45911 * 10 9 8 12 12 Si 1.86803 * 119.99940 * 180.28096 * 11 10 9 13 13 C 1.86301 * 109.46852 * 90.00443 * 12 11 10 14 14 C 1.86305 * 109.47191 * 210.00145 * 12 11 10 15 15 C 1.86296 * 109.47316 * 330.00190 * 12 11 10 16 16 C 1.38234 * 120.00240 * 0.26327 * 11 10 9 17 17 C 1.38234 * 119.99755 * 90.00358 * 8 7 5 18 18 C 1.50696 * 109.47403 * 239.99861 * 2 1 3 19 19 N 1.27944 * 120.00125 * 94.99910 * 18 2 1 20 20 Si 1.86799 * 120.00274 * 275.00490 * 18 2 1 21 21 H 1.48498 * 109.47293 * 59.99448 * 20 18 2 22 22 H 1.48499 * 109.47454 * 179.97438 * 20 18 2 23 23 H 1.48502 * 109.46872 * 299.99571 * 20 18 2 24 24 H 1.09004 * 109.47286 * 299.99827 * 1 2 3 25 25 H 1.08995 * 109.46908 * 60.00243 * 1 2 3 26 26 H 1.09007 * 109.46990 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47267 * 119.99971 * 2 1 3 28 28 H 1.08995 * 109.47021 * 305.00447 * 3 2 1 29 29 H 1.09003 * 109.46916 * 184.99643 * 3 2 1 30 30 H 0.97005 * 120.00004 * 359.97438 * 4 3 2 31 31 H 1.09007 * 109.46663 * 60.00014 * 7 5 4 32 32 H 1.08998 * 109.47798 * 300.00453 * 7 5 4 33 33 H 1.08004 * 120.00244 * 0.02562 * 9 8 7 34 34 H 1.08002 * 120.00519 * 179.74530 * 10 9 8 35 35 H 1.08992 * 109.47179 * 60.00150 * 13 12 11 36 36 H 1.09007 * 109.47049 * 179.97438 * 13 12 11 37 37 H 1.08994 * 109.47120 * 299.99515 * 13 12 11 38 38 H 1.09002 * 109.46698 * 60.00064 * 14 12 11 39 39 H 1.08998 * 109.47017 * 180.02562 * 14 12 11 40 40 H 1.09004 * 109.46851 * 300.00496 * 14 12 11 41 41 H 1.09006 * 109.46796 * 60.00075 * 15 12 11 42 42 H 1.08998 * 109.47288 * 179.97438 * 15 12 11 43 43 H 1.09002 * 109.47253 * 300.00352 * 15 12 11 44 44 H 1.07997 * 120.00460 * 180.02562 * 16 11 10 45 45 H 1.08001 * 120.00274 * 0.02562 * 17 8 7 46 46 H 0.97000 * 120.00208 * 180.02562 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.6525 2.0974 1.2519 5 6 1.9956 3.3816 1.4749 6 8 2.6256 3.9948 0.6394 7 6 1.5966 4.0554 2.7624 8 6 2.0990 5.4762 2.7625 9 6 3.3544 5.7653 3.2635 10 6 3.8130 7.0694 3.2690 11 6 3.0205 8.0828 2.7631 12 14 3.6432 9.8440 2.7632 13 6 4.5501 10.1820 1.1713 14 6 2.2006 11.0128 2.9164 15 6 4.8001 10.0935 4.2020 16 6 1.7673 7.7929 2.2567 17 6 1.3067 6.4895 2.2562 18 6 2.0324 -0.7104 -1.2304 19 7 2.3367 -0.0400 -2.2768 20 14 2.2107 -2.5699 -1.2280 21 1 0.8884 -3.1937 -0.9683 22 1 2.7192 -3.0201 -2.5486 23 1 3.1660 -2.9741 -0.1653 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 0.8900 28 1 1.6054 1.9815 -0.8417 29 1 3.1264 1.4437 -0.0895 30 1 1.1483 1.6070 1.9200 31 1 2.0312 3.5166 3.6044 32 1 0.5103 4.0538 2.8519 33 1 3.9755 4.9730 3.6546 34 1 4.7922 7.2960 3.6642 35 1 3.8732 10.0361 0.3296 36 1 4.9131 11.2099 1.1712 37 1 5.3941 9.4983 1.0817 38 1 1.6700 10.8149 3.8478 39 1 2.5639 12.0404 2.9160 40 1 1.5237 10.8667 2.0746 41 1 5.6442 9.4096 4.1124 42 1 5.1638 11.1210 4.2019 43 1 4.2695 9.8956 5.1334 44 1 1.1483 8.5845 1.8611 45 1 0.3274 6.2631 1.8610 46 1 2.6597 -0.4973 -3.0689 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798171817.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:46:45 Heat of formation + Delta-G solvation = -37.812187 kcal Electronic energy + Delta-G solvation = -22130.615984 eV Core-core repulsion = 18949.833453 eV Total energy + Delta-G solvation = -3180.782531 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.05420 -39.63470 -38.30527 -35.54660 -33.78816 -32.70827 -31.77860 -29.55148 -28.77820 -28.28877 -28.28789 -26.92151 -24.59615 -23.39967 -22.42055 -21.40757 -20.15467 -18.32874 -17.82693 -17.45852 -16.75302 -16.48231 -15.91596 -15.79487 -15.27960 -15.08037 -14.81279 -14.35370 -14.26495 -14.15554 -13.98290 -13.92186 -13.79088 -13.74945 -13.53896 -13.35872 -13.10783 -13.08972 -12.97830 -12.88345 -12.65610 -12.60713 -12.30372 -12.25638 -11.88877 -11.81892 -11.38500 -11.07060 -10.85378 -10.75331 -10.71341 -10.11018 -9.81795 -9.70873 -9.47229 0.37381 0.61571 0.83202 1.08873 1.45352 1.65973 1.78198 1.87053 1.87761 2.04977 2.07139 2.31922 2.68564 3.04358 3.48983 3.74008 3.93776 3.98692 4.06454 4.12297 4.21751 4.32513 4.42396 4.58315 4.61781 4.75394 4.79202 4.82141 4.82684 4.85266 4.87322 4.88473 4.89194 4.90942 4.91345 5.04477 5.15809 5.20423 5.24977 5.38523 5.48047 5.50885 5.57695 5.62863 5.65709 5.71296 5.72968 6.24440 6.58697 6.90459 7.30702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.074 4.074 3 C 0.142 3.858 4 N -0.717 5.717 5 C 0.509 3.491 6 O -0.585 6.585 7 C -0.097 4.097 8 C -0.073 4.073 9 C -0.137 4.137 10 C -0.104 4.104 11 C -0.387 4.387 12 Si 1.120 2.880 13 C -0.466 4.466 14 C -0.457 4.457 15 C -0.457 4.457 16 C -0.105 4.105 17 C -0.138 4.138 18 C -0.005 4.005 19 N -0.661 5.661 20 Si 0.981 3.019 21 H -0.230 1.230 22 H -0.269 1.269 23 H -0.238 1.238 24 H 0.082 0.918 25 H 0.045 0.955 26 H 0.079 0.921 27 H 0.126 0.874 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.419 0.581 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.124 0.876 34 H 0.133 0.867 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.133 0.867 45 H 0.124 0.876 46 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.168 -4.405 5.005 7.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.094 4.094 3 C 0.018 3.982 4 N -0.371 5.371 5 C 0.297 3.703 6 O -0.464 6.464 7 C -0.137 4.137 8 C -0.074 4.074 9 C -0.155 4.155 10 C -0.122 4.122 11 C -0.426 4.426 12 Si 1.308 2.692 13 C -0.572 4.572 14 C -0.564 4.564 15 C -0.564 4.564 16 C -0.122 4.122 17 C -0.156 4.156 18 C -0.253 4.253 19 N -0.275 5.275 20 Si 0.797 3.203 21 H -0.153 1.153 22 H -0.193 1.193 23 H -0.161 1.161 24 H 0.101 0.899 25 H 0.064 0.936 26 H 0.098 0.902 27 H 0.144 0.856 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.257 0.743 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.142 0.858 34 H 0.151 0.849 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.151 0.849 45 H 0.142 0.858 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.667 -3.941 4.130 6.301 hybrid contribution 0.090 -0.845 -0.590 1.034 sum -2.577 -4.786 3.540 6.486 Atomic orbital electron populations 1.21818 0.91706 1.03662 1.02978 1.20827 0.97993 0.93666 0.96878 1.21049 0.98790 0.92585 0.85785 1.45945 1.57858 1.12264 1.21072 1.21075 0.78503 0.81868 0.88860 1.90744 1.41603 1.65464 1.48592 1.20762 1.04892 0.92360 0.95665 1.19570 0.94857 0.94619 0.98332 1.21326 0.95641 0.97624 1.00941 1.21341 0.99985 0.92804 0.98096 1.27944 0.97838 1.16362 1.00482 0.77257 0.65659 0.60481 0.65846 1.26342 1.08394 1.05067 1.17386 1.26211 1.14379 1.11112 1.04738 1.26206 1.10778 1.05130 1.14299 1.21337 0.96507 0.96426 0.97974 1.21327 1.00392 0.93755 1.00109 1.30618 0.91938 1.07914 0.94788 1.68243 1.09758 1.45764 1.03694 0.85076 0.82713 0.71447 0.81104 1.15280 1.19316 1.16056 0.89921 0.93593 0.90214 0.85576 0.93179 0.93655 0.74315 0.85280 0.85360 0.85770 0.84873 0.91894 0.90488 0.91866 0.90988 0.90529 0.91168 0.91138 0.90528 0.90981 0.84922 0.85845 0.84068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.96 8.99 71.98 0.65 1.61 16 2 C -0.07 0.33 2.35 -11.54 -0.03 0.31 16 3 C 0.14 0.37 4.45 86.38 0.38 0.75 16 4 N -0.72 0.91 5.28 -463.06 -2.45 -1.53 16 5 C 0.51 2.69 7.82 87.65 0.69 3.38 16 6 O -0.58 -9.95 16.03 -3.04 -0.05 -10.00 16 7 C -0.10 0.11 5.83 29.10 0.17 0.28 16 8 C -0.07 -0.42 4.37 -19.87 -0.09 -0.51 16 9 C -0.14 -0.86 9.70 22.27 0.22 -0.64 16 10 C -0.10 -0.55 9.29 22.27 0.21 -0.34 16 11 C -0.39 -1.56 4.59 22.27 0.10 -1.46 16 12 Si 1.12 -2.36 12.32 68.60 0.85 -1.52 16 13 C -0.47 -0.48 8.65 113.37 0.98 0.50 16 14 C -0.46 0.85 8.53 113.37 0.97 1.81 16 15 C -0.46 0.88 8.53 113.37 0.97 1.85 16 16 C -0.10 -0.56 9.29 22.27 0.21 -0.36 16 17 C -0.14 -0.89 9.70 22.27 0.22 -0.67 16 18 C 0.00 0.01 4.83 88.67 0.43 0.44 16 19 N -0.66 -2.05 12.81 24.11 0.31 -1.74 16 20 Si 0.98 -4.87 29.29 68.60 2.01 -2.86 16 21 H -0.23 1.28 7.11 99.48 0.71 1.99 16 22 H -0.27 0.43 7.11 99.48 0.71 1.14 16 23 H -0.24 1.08 7.11 99.48 0.71 1.79 16 24 H 0.08 -0.83 7.18 -2.39 -0.02 -0.85 16 25 H 0.04 -0.10 8.14 -2.39 -0.02 -0.12 16 26 H 0.08 -0.74 7.94 -2.38 -0.02 -0.76 16 27 H 0.13 -1.32 7.85 -2.38 -0.02 -1.34 16 28 H 0.05 0.44 7.98 -2.39 -0.02 0.42 16 29 H 0.04 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.42 -4.01 7.65 -92.70 -0.71 -4.72 16 31 H 0.13 -0.87 8.09 -2.38 -0.02 -0.89 16 32 H 0.13 -0.84 8.09 -2.39 -0.02 -0.86 16 33 H 0.12 0.38 8.06 -2.91 -0.02 0.35 16 34 H 0.13 0.13 7.43 -2.91 -0.02 0.11 16 35 H 0.06 0.15 7.96 -2.39 -0.02 0.13 16 36 H 0.08 -0.04 7.96 -2.38 -0.02 -0.06 16 37 H 0.06 0.15 7.96 -2.39 -0.02 0.13 16 38 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 39 H 0.08 -0.21 7.96 -2.39 -0.02 -0.22 16 40 H 0.07 -0.12 7.69 -2.38 -0.02 -0.14 16 41 H 0.07 -0.13 7.69 -2.38 -0.02 -0.15 16 42 H 0.08 -0.21 7.96 -2.39 -0.02 -0.23 16 43 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 44 H 0.13 0.16 7.43 -2.91 -0.02 0.14 16 45 H 0.12 0.41 8.06 -2.91 -0.02 0.39 16 46 H 0.34 0.19 8.23 -92.71 -0.76 -0.57 16 Total: 0.00 -21.96 385.39 6.97 -14.99 By element: Atomic # 1 Polarization: -4.53 SS G_CDS: 0.24 Total: -4.29 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 6.07 Total: 6.95 kcal Atomic # 7 Polarization: -1.13 SS G_CDS: -2.14 Total: -3.27 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: -0.05 Total: -10.00 kcal Atomic # 14 Polarization: -7.23 SS G_CDS: 2.85 Total: -4.38 kcal Total: -21.96 6.97 -14.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798171817.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.826 kcal (2) G-P(sol) polarization free energy of solvation -21.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds