Wall clock time and date at job start Tue Mar 31 2020 08:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46939 * 2 1 4 4 N 1.46506 * 109.47196 * 119.99750 * 2 1 3 5 5 N 1.39891 * 125.74682 * 299.69114 * 4 2 1 6 6 C 1.30290 * 109.23001 * 179.86992 * 5 4 2 7 7 C 1.41479 * 108.18689 * 0.39002 * 6 5 4 8 8 C 1.46772 * 126.51604 * 179.75304 * 7 6 5 9 9 O 1.21693 * 120.00067 * 153.38031 * 8 7 6 10 10 N 1.34777 * 120.00335 * 333.38171 * 8 7 6 11 11 C 1.46500 * 119.99704 * 5.80250 * 10 8 7 12 12 C 1.50705 * 109.47078 * 95.81235 * 11 10 8 13 13 H 1.07996 * 119.99597 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00102 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99962 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00087 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46855 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47014 * 119.99681 * 16 14 12 19 19 H 1.48494 * 109.46929 * 239.99740 * 16 14 12 20 20 C 1.46500 * 120.00425 * 185.80661 * 10 8 7 21 21 C 1.52999 * 109.46899 * 87.15253 * 20 10 8 22 22 C 1.47206 * 109.46814 * 180.02562 * 21 20 10 23 23 N 8.99418 * 161.39387 * 243.50449 * 4 1 2 24 24 C 1.34848 * 125.74293 * 120.00190 * 4 2 1 25 25 N 1.38011 * 126.44731 * 359.93283 * 24 4 2 26 26 H 1.08999 * 109.46984 * 299.99702 * 1 2 3 27 27 H 1.09007 * 109.46696 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47205 * 60.00550 * 1 2 3 29 29 H 1.08999 * 109.46984 * 240.00298 * 2 1 3 30 30 H 1.08999 * 109.47326 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.46709 * 300.00031 * 3 2 1 32 32 H 1.09000 * 109.47161 * 59.99793 * 3 2 1 33 33 H 1.08003 * 125.90365 * 180.17877 * 6 5 4 34 34 H 1.08997 * 109.47542 * 215.81377 * 11 10 8 35 35 H 1.09006 * 109.47342 * 335.81332 * 11 10 8 36 36 H 0.97000 * 119.99987 * 180.02562 * 15 14 12 37 37 H 1.08998 * 109.46948 * 207.15212 * 20 10 8 38 38 H 1.08999 * 109.47105 * 327.15157 * 20 10 8 39 39 H 1.08998 * 109.47287 * 299.99751 * 21 20 10 40 40 H 1.08998 * 109.47568 * 60.00526 * 21 20 10 41 41 H 0.96996 * 120.00124 * 359.97438 * 25 24 4 42 42 H 0.96997 * 119.99701 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 7 1.7606 -0.3153 2.5190 6 6 2.3477 -1.1538 3.3251 7 6 3.0278 -2.1164 2.5423 8 6 3.8249 -3.2430 3.0417 9 8 3.9545 -4.2448 2.3631 10 7 4.4134 -3.1682 4.2519 11 6 4.1550 -2.0184 5.1222 12 6 3.0572 -2.3620 6.0958 13 1 2.5977 -3.3390 6.0687 14 6 2.6387 -1.4288 7.0205 15 7 3.1979 -0.2389 7.0532 16 14 1.2785 -1.8550 8.2278 17 1 0.8197 -3.2464 7.9854 18 1 1.7938 -1.7377 9.6156 19 1 0.1404 -0.9194 8.0416 20 6 5.3116 -4.2365 4.6971 21 6 6.7309 -3.9480 4.2039 22 6 7.6333 -5.0218 4.6507 23 7 8.3299 -5.8499 4.9964 24 6 2.7970 -1.7915 1.2075 25 7 3.2746 -2.4693 0.1043 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5137 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 2.3226 -1.1181 4.4042 34 1 5.0623 -1.7672 5.6715 35 1 3.8493 -1.1654 4.5162 36 1 2.9038 0.4175 7.7039 37 1 5.3080 -4.2840 5.7860 38 1 4.9724 -5.1893 4.2907 39 1 6.7346 -3.9005 3.1149 40 1 7.0703 -2.9952 4.6103 41 1 3.0540 -2.1598 -0.7881 42 1 3.8304 -3.2556 0.2213 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798927559.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:05 Heat of formation + Delta-G solvation = 72.138127 kcal Electronic energy + Delta-G solvation = -25398.677162 eV Core-core repulsion = 21801.864134 eV Total energy + Delta-G solvation = -3596.813028 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.91808 -38.71119 -36.55773 -35.52931 -35.18479 -34.20968 -32.92302 -31.28734 -29.54736 -28.12231 -27.35463 -27.20436 -24.26126 -23.06874 -22.57889 -21.14199 -19.60255 -18.54106 -17.46219 -17.30152 -16.56795 -16.29754 -15.80145 -15.24605 -14.98098 -14.69164 -14.50586 -14.25867 -14.11651 -13.94025 -13.37746 -12.91691 -12.83546 -12.67959 -12.39543 -12.30016 -12.25072 -12.05228 -12.00880 -11.53564 -11.42701 -11.34889 -11.05425 -10.96192 -10.84265 -10.59342 -10.41166 -10.12325 -10.03578 -9.71490 -9.04031 -8.64920 -8.33849 -7.80892 -7.28091 -6.19903 -4.28023 2.35490 2.62258 2.91803 3.00369 3.06296 3.24774 3.34262 3.38587 3.85104 3.90664 4.17533 4.35960 4.44091 4.55249 4.85335 4.88368 5.12436 5.32968 5.37952 5.43456 5.45920 5.53312 5.67581 5.69890 5.76225 5.79563 5.98010 6.10015 6.19795 6.20521 6.38222 6.44334 6.74655 6.78290 7.24690 7.42877 7.57197 7.65421 7.76198 7.76908 7.79060 8.04242 8.37263 8.44214 8.82029 9.12245 9.40399 10.84849 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.009340 B = 0.005948 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2997.123045 B = 4706.469542 C = 7064.461839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.162 3.838 3 C -0.160 4.160 4 N -0.400 5.400 5 N -0.320 5.320 6 C 0.121 3.879 7 C -0.357 4.357 8 C 0.605 3.395 9 O -0.593 6.593 10 N -0.592 5.592 11 C 0.218 3.782 12 C -0.541 4.541 13 H 0.065 0.935 14 C 0.067 3.933 15 N -0.884 5.884 16 Si 0.892 3.108 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.281 1.281 20 C 0.129 3.871 21 C -0.045 4.045 22 C 0.223 3.777 23 N -0.454 5.454 24 C 0.412 3.588 25 N -0.841 5.841 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.231 0.769 34 H 0.034 0.966 35 H 0.063 0.937 36 H 0.267 0.733 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.392 0.608 42 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.289 2.865 -14.330 14.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.060 3.940 3 C -0.217 4.217 4 N -0.189 5.189 5 N -0.138 5.138 6 C -0.067 4.067 7 C -0.376 4.376 8 C 0.397 3.603 9 O -0.477 6.477 10 N -0.321 5.321 11 C 0.098 3.902 12 C -0.580 4.580 13 H 0.083 0.917 14 C -0.137 4.137 15 N -0.522 5.522 16 Si 0.720 3.280 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.207 1.207 20 C 0.004 3.996 21 C -0.087 4.087 22 C -0.095 4.095 23 N -0.131 5.131 24 C 0.180 3.820 25 N -0.391 5.391 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.247 0.753 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.125 0.875 40 H 0.129 0.871 41 H 0.221 0.779 42 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -0.981 2.457 -14.168 14.413 hybrid contribution -0.378 -0.601 0.362 0.797 sum -1.359 1.856 -13.806 13.997 Atomic orbital electron populations 1.22115 0.93544 1.02841 1.03258 1.21043 0.95489 0.93772 0.83689 1.22115 1.01648 0.94699 1.03287 1.48570 1.41912 1.21656 1.06719 1.77187 1.27306 1.24975 0.84322 1.25447 0.90305 0.88822 1.02137 1.19286 1.20645 1.07938 0.89690 1.17038 0.77530 0.85094 0.80631 1.90623 1.65614 1.32447 1.58967 1.47843 1.44057 1.23382 1.16781 1.20028 0.97162 0.83742 0.89260 1.21570 1.19607 1.00476 1.16333 0.91686 1.24946 0.96749 0.94857 0.97123 1.69927 1.41527 1.04789 1.35953 0.86512 0.81817 0.78843 0.80848 1.19582 1.20910 1.20692 1.21042 0.85843 0.92168 1.00581 1.19811 0.92767 0.93035 1.03076 1.29168 0.93519 0.94052 0.92779 1.81169 1.10929 1.11216 1.09807 1.18031 0.89097 0.86208 0.88697 1.41522 1.59319 1.34186 1.04032 0.90658 0.92263 0.91244 0.89679 0.92236 0.91270 0.90604 0.75294 0.94818 0.92006 0.92370 0.89316 0.90178 0.87541 0.87095 0.77937 0.74070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.45 37.16 0.35 -1.26 16 2 C 0.16 1.77 3.67 -67.93 -0.25 1.52 16 3 C -0.16 -1.60 9.44 37.16 0.35 -1.24 16 4 N -0.40 -6.17 3.27 -53.55 -0.17 -6.35 16 5 N -0.32 -6.07 12.30 30.88 0.38 -5.69 16 6 C 0.12 2.48 9.60 -16.97 -0.16 2.32 16 7 C -0.36 -6.87 5.75 -104.82 -0.60 -7.47 16 8 C 0.61 11.96 7.57 -12.81 -0.10 11.86 16 9 O -0.59 -12.04 15.23 5.20 0.08 -11.96 16 10 N -0.59 -11.30 2.46 -176.57 -0.43 -11.73 16 11 C 0.22 4.70 4.67 -5.19 -0.02 4.68 16 12 C -0.54 -12.99 7.80 -34.44 -0.27 -13.26 16 13 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 14 C 0.07 1.66 5.21 -17.82 -0.09 1.57 16 15 N -0.88 -22.71 13.29 55.43 0.74 -21.97 16 16 Si 0.89 19.80 29.54 -169.99 -5.02 14.78 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 C 0.13 2.11 5.40 -4.04 -0.02 2.09 16 21 C -0.05 -0.60 6.01 -29.52 -0.18 -0.78 16 22 C 0.22 3.25 15.43 -20.76 -0.32 2.93 16 23 N -0.45 -7.65 18.54 42.16 0.78 -6.87 16 24 C 0.41 6.65 7.97 -153.78 -1.23 5.42 16 25 N -0.84 -10.19 9.02 31.40 0.28 -9.90 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.70 6.77 -51.93 -0.35 0.34 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.23 5.26 4.16 -52.48 -0.22 5.04 16 34 H 0.03 0.75 8.11 -51.93 -0.42 0.33 16 35 H 0.06 1.40 4.16 -51.93 -0.22 1.18 16 36 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 37 H 0.09 1.46 8.05 -51.93 -0.42 1.04 16 38 H 0.08 1.34 7.43 -51.93 -0.39 0.96 16 39 H 0.11 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.39 3.35 7.61 -40.82 -0.31 3.04 16 42 H 0.42 5.41 7.49 -40.82 -0.31 5.10 16 LS Contribution 357.99 15.07 5.39 5.39 Total: -1.00 -29.44 357.99 -6.07 -35.52 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -5.55 Total: 10.42 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: -2.54 Total: 8.37 kcal Atomic # 7 Polarization: -64.08 SS G_CDS: 1.57 Total: -62.51 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.08 Total: -11.96 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.44 -6.07 -35.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798927559.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.654 kcal (2) G-P(sol) polarization free energy of solvation -29.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds