Wall clock time and date at job start Tue Mar 31 2020 08:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46939 * 2 1 4 4 N 1.46506 * 109.47196 * 119.99750 * 2 1 3 5 5 N 1.39891 * 125.74682 * 299.69114 * 4 2 1 6 6 C 1.30290 * 109.23001 * 179.86992 * 5 4 2 7 7 C 1.41479 * 108.18689 * 0.39002 * 6 5 4 8 8 C 1.46772 * 126.51604 * 179.75304 * 7 6 5 9 9 O 1.21693 * 120.00067 * 153.38031 * 8 7 6 10 10 N 1.34777 * 120.00335 * 333.38171 * 8 7 6 11 11 C 1.46500 * 119.99704 * 5.80250 * 10 8 7 12 12 C 1.50705 * 109.47078 * 95.81235 * 11 10 8 13 13 H 1.07996 * 119.99597 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00102 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99962 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00087 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46855 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47014 * 119.99681 * 16 14 12 19 19 H 1.48494 * 109.46929 * 239.99740 * 16 14 12 20 20 C 1.46500 * 120.00425 * 185.80661 * 10 8 7 21 21 C 1.52999 * 109.46899 * 87.15253 * 20 10 8 22 22 C 1.47206 * 109.46814 * 180.02562 * 21 20 10 23 23 N 8.99418 * 161.39387 * 243.50449 * 4 1 2 24 24 C 1.34848 * 125.74293 * 120.00190 * 4 2 1 25 25 N 1.38011 * 126.44731 * 359.93283 * 24 4 2 26 26 H 1.08999 * 109.46984 * 299.99702 * 1 2 3 27 27 H 1.09007 * 109.46696 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47205 * 60.00550 * 1 2 3 29 29 H 1.08999 * 109.46984 * 240.00298 * 2 1 3 30 30 H 1.08999 * 109.47326 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.46709 * 300.00031 * 3 2 1 32 32 H 1.09000 * 109.47161 * 59.99793 * 3 2 1 33 33 H 1.08003 * 125.90365 * 180.17877 * 6 5 4 34 34 H 1.08997 * 109.47542 * 215.81377 * 11 10 8 35 35 H 1.09006 * 109.47342 * 335.81332 * 11 10 8 36 36 H 0.97000 * 119.99987 * 180.02562 * 15 14 12 37 37 H 1.08998 * 109.46948 * 207.15212 * 20 10 8 38 38 H 1.08999 * 109.47105 * 327.15157 * 20 10 8 39 39 H 1.08998 * 109.47287 * 299.99751 * 21 20 10 40 40 H 1.08998 * 109.47568 * 60.00526 * 21 20 10 41 41 H 0.96996 * 120.00124 * 359.97438 * 25 24 4 42 42 H 0.96997 * 119.99701 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 7 1.7606 -0.3153 2.5190 6 6 2.3477 -1.1538 3.3251 7 6 3.0278 -2.1164 2.5423 8 6 3.8249 -3.2430 3.0417 9 8 3.9545 -4.2448 2.3631 10 7 4.4134 -3.1682 4.2519 11 6 4.1550 -2.0184 5.1222 12 6 3.0572 -2.3620 6.0958 13 1 2.5977 -3.3390 6.0687 14 6 2.6387 -1.4288 7.0205 15 7 3.1979 -0.2389 7.0532 16 14 1.2785 -1.8550 8.2278 17 1 0.8197 -3.2464 7.9854 18 1 1.7938 -1.7377 9.6156 19 1 0.1404 -0.9194 8.0416 20 6 5.3116 -4.2365 4.6971 21 6 6.7309 -3.9480 4.2039 22 6 7.6333 -5.0218 4.6507 23 7 8.3299 -5.8499 4.9964 24 6 2.7970 -1.7915 1.2075 25 7 3.2746 -2.4693 0.1043 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5137 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 2.3226 -1.1181 4.4042 34 1 5.0623 -1.7672 5.6715 35 1 3.8493 -1.1654 4.5162 36 1 2.9038 0.4175 7.7039 37 1 5.3080 -4.2840 5.7860 38 1 4.9724 -5.1893 4.2907 39 1 6.7346 -3.9005 3.1149 40 1 7.0703 -2.9952 4.6103 41 1 3.0540 -2.1598 -0.7881 42 1 3.8304 -3.2556 0.2213 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798927559.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:04 Heat of formation + Delta-G solvation = 54.345091 kcal Electronic energy + Delta-G solvation = -25399.448726 eV Core-core repulsion = 21801.864134 eV Total energy + Delta-G solvation = -3597.584592 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.24862 -40.17332 -37.83650 -36.87475 -36.36662 -35.42119 -34.66390 -32.70281 -30.76138 -29.51563 -28.90891 -28.14637 -25.57835 -24.84249 -23.75022 -22.51464 -20.76252 -19.95983 -18.77414 -18.47692 -18.24207 -17.73879 -17.09877 -16.66145 -16.22604 -16.17093 -15.86021 -15.50816 -15.33108 -15.15670 -14.69837 -14.34720 -14.24030 -14.04866 -13.75378 -13.56568 -13.41752 -13.07452 -13.05390 -12.88115 -12.79172 -12.64951 -12.31399 -12.26788 -12.26022 -12.08040 -11.88418 -11.68054 -11.50723 -11.44420 -10.63954 -10.42400 -9.68667 -9.38269 -8.60935 -8.09770 -6.22288 1.04866 1.44735 1.47001 1.50740 1.52415 1.59272 1.71784 1.81604 2.42026 2.50574 2.72680 2.86785 3.19908 3.24818 3.59314 4.01389 4.04646 4.08604 4.21166 4.25426 4.39505 4.56290 4.62269 4.73033 4.80935 4.85893 4.86349 4.90744 5.02542 5.09457 5.13449 5.28930 5.30855 5.45662 5.67631 5.80112 5.91013 6.03116 6.19598 6.47572 6.58181 6.70046 6.76365 6.96700 7.13024 7.45445 7.61980 8.93398 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.009340 B = 0.005948 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2997.123045 B = 4706.469542 C = 7064.461839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.148 3.852 3 C -0.155 4.155 4 N -0.391 5.391 5 N -0.336 5.336 6 C 0.103 3.897 7 C -0.388 4.388 8 C 0.603 3.397 9 O -0.602 6.602 10 N -0.593 5.593 11 C 0.233 3.767 12 C -0.539 4.539 13 H 0.051 0.949 14 C 0.032 3.968 15 N -0.909 5.909 16 Si 0.940 3.060 17 H -0.274 1.274 18 H -0.280 1.280 19 H -0.282 1.282 20 C 0.126 3.874 21 C -0.029 4.029 22 C 0.246 3.754 23 N -0.491 5.491 24 C 0.424 3.576 25 N -0.817 5.817 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.105 0.895 29 H 0.123 0.877 30 H 0.053 0.947 31 H 0.105 0.895 32 H 0.049 0.951 33 H 0.203 0.797 34 H 0.026 0.974 35 H 0.055 0.945 36 H 0.267 0.733 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.122 0.878 40 H 0.128 0.872 41 H 0.413 0.587 42 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.438 3.070 -16.807 17.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.048 3.952 3 C -0.212 4.212 4 N -0.180 5.180 5 N -0.155 5.155 6 C -0.085 4.085 7 C -0.408 4.408 8 C 0.395 3.605 9 O -0.487 6.487 10 N -0.321 5.321 11 C 0.112 3.888 12 C -0.578 4.578 13 H 0.069 0.931 14 C -0.169 4.169 15 N -0.548 5.548 16 Si 0.767 3.233 17 H -0.199 1.199 18 H -0.206 1.206 19 H -0.208 1.208 20 C 0.001 3.999 21 C -0.070 4.070 22 C -0.071 4.071 23 N -0.169 5.169 24 C 0.188 3.812 25 N -0.369 5.369 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.124 0.876 29 H 0.141 0.859 30 H 0.072 0.928 31 H 0.123 0.877 32 H 0.068 0.932 33 H 0.219 0.781 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.140 0.860 40 H 0.145 0.855 41 H 0.245 0.755 42 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -1.128 2.656 -16.679 16.926 hybrid contribution -0.397 -0.640 0.989 1.243 sum -1.525 2.016 -15.689 15.892 Atomic orbital electron populations 1.22099 0.92852 1.02518 1.03840 1.21623 0.96171 0.94451 0.82926 1.22093 1.01252 0.94094 1.03806 1.48850 1.41153 1.21415 1.06591 1.77062 1.27391 1.24973 0.86104 1.24984 0.91932 0.90207 1.01351 1.19355 1.21984 1.08294 0.91125 1.17157 0.77488 0.85198 0.80612 1.90601 1.66185 1.32692 1.59178 1.47758 1.44624 1.23267 1.16468 1.19690 0.95855 0.84432 0.88843 1.21676 1.19948 0.99613 1.16593 0.93092 1.25445 0.98237 0.94851 0.98412 1.69990 1.42703 1.05387 1.36674 0.85770 0.79922 0.78214 0.79380 1.19892 1.20623 1.20762 1.21112 0.87124 0.91207 1.00407 1.19704 0.90355 0.93097 1.03876 1.29236 0.92797 0.93399 0.91631 1.81197 1.12213 1.12356 1.11127 1.18006 0.88299 0.86082 0.88780 1.41461 1.58061 1.33363 1.03982 0.93131 0.93002 0.87604 0.85922 0.92774 0.87659 0.93161 0.78101 0.95551 0.92733 0.92404 0.89804 0.90614 0.86032 0.85462 0.75474 0.73971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.45 71.98 0.68 -2.07 16 2 C 0.15 2.80 3.67 44.99 0.17 2.96 16 3 C -0.15 -2.70 9.44 71.98 0.68 -2.02 16 4 N -0.39 -11.51 3.27 -323.33 -1.06 -12.57 16 5 N -0.34 -12.92 12.30 -56.23 -0.69 -13.61 16 6 C 0.10 4.36 9.60 85.72 0.82 5.18 16 7 C -0.39 -14.93 5.75 -19.99 -0.11 -15.05 16 8 C 0.60 23.66 7.57 86.47 0.65 24.31 16 9 O -0.60 -23.86 15.23 -4.32 -0.07 -23.92 16 10 N -0.59 -22.71 2.46 -830.75 -2.05 -24.75 16 11 C 0.23 10.26 4.67 85.63 0.40 10.66 16 12 C -0.54 -26.52 7.80 25.60 0.20 -26.32 16 13 H 0.05 2.61 7.81 -2.91 -0.02 2.58 16 14 C 0.03 1.61 5.21 84.66 0.44 2.05 16 15 N -0.91 -47.60 13.29 21.45 0.28 -47.32 16 16 Si 0.94 41.24 29.54 68.60 2.03 43.27 16 17 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 18 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 19 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 20 C 0.13 4.07 5.40 86.38 0.47 4.53 16 21 C -0.03 -0.73 6.01 28.79 0.17 -0.55 16 22 C 0.25 6.89 15.43 89.44 1.38 8.28 16 23 N -0.49 -16.17 18.54 20.01 0.37 -15.80 16 24 C 0.42 12.99 7.97 132.69 1.06 14.05 16 25 N -0.82 -17.39 9.02 -54.57 -0.49 -17.89 16 26 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 28 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.12 1.42 6.77 -2.39 -0.02 1.40 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.20 9.67 4.16 -2.91 -0.01 9.65 16 34 H 0.03 1.19 8.11 -2.39 -0.02 1.18 16 35 H 0.06 2.56 4.16 -2.38 -0.01 2.55 16 36 H 0.27 13.42 8.31 -92.71 -0.77 12.65 16 37 H 0.08 2.76 8.05 -2.39 -0.02 2.74 16 38 H 0.08 2.51 7.43 -2.39 -0.02 2.49 16 39 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 40 H 0.13 2.84 8.14 -2.39 -0.02 2.82 16 41 H 0.41 5.35 7.61 -92.71 -0.71 4.65 16 42 H 0.43 9.67 7.49 -92.71 -0.69 8.97 16 Total: -1.00 -65.15 357.99 5.01 -60.13 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: -0.32 Total: 26.45 kcal Atomic # 6 Polarization: 19.00 SS G_CDS: 7.01 Total: 26.00 kcal Atomic # 7 Polarization: -128.31 SS G_CDS: -3.63 Total: -131.94 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.07 Total: -23.92 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -65.15 5.01 -60.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798927559.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.478 kcal (2) G-P(sol) polarization free energy of solvation -65.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds