Wall clock time and date at job start Tue Mar 31 2020 09:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 120.00057 * 2 1 4 4 N 1.46505 * 109.46778 * 124.99652 * 3 2 1 5 5 C 1.46499 * 119.99802 * 93.71784 * 4 3 2 6 6 C 1.50700 * 109.47446 * 95.79160 * 5 4 3 7 7 H 1.08008 * 119.99704 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00487 * 180.02562 * 6 5 4 9 9 N 1.31526 * 119.99534 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00363 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47075 * 59.99533 * 10 8 6 12 12 H 1.48501 * 109.47068 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.46923 * 299.99428 * 10 8 6 14 14 C 1.34777 * 119.99782 * 273.70843 * 4 3 2 15 15 O 1.21272 * 120.00168 * 5.24303 * 14 4 3 16 16 C 1.50700 * 119.99756 * 185.23336 * 14 4 3 17 17 H 1.09001 * 109.47041 * 40.40207 * 16 14 4 18 18 C 1.53000 * 109.47369 * 280.40473 * 16 14 4 19 19 C 1.52999 * 109.47204 * 160.40449 * 16 14 4 20 20 C 1.50698 * 109.47577 * 185.00265 * 19 16 14 21 21 C 1.38251 * 119.97170 * 269.72992 * 20 19 16 22 22 C 1.38200 * 120.01879 * 179.72263 * 21 20 19 23 23 C 1.38454 * 119.97828 * 0.56853 * 22 21 20 24 24 F 1.35100 * 120.02843 * 179.68310 * 23 22 21 25 25 C 1.38456 * 119.94624 * 359.70039 * 23 22 21 26 26 C 1.38190 * 119.97842 * 0.02562 * 25 23 22 27 27 H 1.08003 * 120.00252 * 179.97438 * 1 2 3 28 28 H 1.08001 * 119.99970 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.99950 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.47106 * 4.99928 * 3 2 1 31 31 H 1.08995 * 109.47175 * 244.99637 * 3 2 1 32 32 H 1.08999 * 109.46821 * 215.78749 * 5 4 3 33 33 H 1.08999 * 109.47584 * 335.78632 * 5 4 3 34 34 H 0.96997 * 119.99599 * 179.97438 * 9 8 6 35 35 H 1.08997 * 109.47283 * 172.34997 * 18 16 14 36 36 H 1.08999 * 109.47137 * 292.35048 * 18 16 14 37 37 H 1.09001 * 109.47506 * 52.34676 * 18 16 14 38 38 H 1.09003 * 109.47197 * 305.00235 * 19 16 14 39 39 H 1.09004 * 109.47380 * 64.99978 * 19 16 14 40 40 H 1.07993 * 119.98809 * 359.97247 * 21 20 19 41 41 H 1.08009 * 120.00633 * 180.25068 * 22 21 20 42 42 H 1.08007 * 120.00914 * 179.97438 * 25 23 22 43 43 H 1.08006 * 119.98935 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 4.3821 0.9017 0.9487 6 6 5.2514 2.1056 0.6916 7 1 4.8133 3.0925 0.6665 8 6 6.6057 1.9472 0.4874 9 7 7.1390 0.7453 0.5175 10 14 7.6832 3.4395 0.1695 11 1 7.6009 4.3653 1.3277 12 1 9.0906 3.0034 -0.0160 13 1 7.2149 4.1362 -1.0555 14 6 2.5721 1.7524 2.3406 15 8 1.4020 2.0181 2.5161 16 6 3.5549 1.8923 3.4745 17 1 4.4856 2.3169 3.0983 18 6 3.8315 0.5158 4.0825 19 6 2.9697 2.8147 4.5458 20 6 3.9989 3.0530 5.6204 21 6 4.0616 2.2116 6.7156 22 6 5.0088 2.4259 7.6988 23 6 5.8876 3.4906 7.5926 24 9 6.8098 3.7048 8.5563 25 6 5.8202 4.3358 6.4980 26 6 4.8759 4.1164 5.5132 27 1 -0.5401 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4026 -0.9313 32 1 4.7257 0.3910 1.8482 33 1 4.4429 0.2216 0.0991 34 1 8.0917 0.6338 0.3734 35 1 4.6401 0.5953 4.8090 36 1 2.9322 0.1502 4.5783 37 1 4.1191 -0.1789 3.2933 38 1 2.6902 3.7660 4.0929 39 1 2.0876 2.3482 4.9846 40 1 3.3727 1.3843 6.8007 41 1 5.0602 1.7660 8.5523 42 1 6.5049 5.1669 6.4144 43 1 4.8229 4.7758 4.6595 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814134361.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:19:06 Heat of formation + Delta-G solvation = -50.589655 kcal Electronic energy + Delta-G solvation = -25089.263040 eV Core-core repulsion = 21434.915423 eV Total energy + Delta-G solvation = -3654.347617 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.82213 -39.72706 -38.78705 -35.54077 -34.53419 -33.34476 -32.15336 -31.08663 -30.25823 -27.46678 -26.33180 -25.81938 -23.41289 -22.96003 -22.31946 -20.82377 -19.52680 -18.10829 -17.57418 -16.81955 -16.41655 -16.19938 -15.60369 -15.46659 -15.16818 -14.69552 -14.48606 -14.05051 -13.90939 -13.83688 -13.44150 -13.26097 -13.12839 -12.72963 -12.43710 -12.21277 -11.92033 -11.73622 -11.63154 -11.32366 -11.21102 -11.01572 -10.95589 -10.88249 -10.78577 -10.50950 -10.47815 -10.10234 -9.77533 -9.26360 -9.02763 -8.81879 -8.56767 -8.38096 -7.74496 -6.21921 -4.29332 1.22352 1.31095 2.58342 3.20827 3.26938 3.27946 3.42354 3.64905 4.06478 4.30357 4.33436 4.78078 4.89817 4.97072 5.10666 5.28461 5.34053 5.36966 5.37807 5.48197 5.58177 5.58531 5.86961 5.92564 6.02223 6.06531 6.12313 6.15683 6.18216 6.21395 6.30843 6.32718 6.33869 6.54151 6.63758 6.70977 6.81405 6.92850 6.98120 7.12656 7.21803 7.52621 7.72843 8.02522 8.32591 8.76044 9.02675 9.38507 10.84533 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.010381 B = 0.005237 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.579019 B = 5345.270983 C = 7344.285014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.158 4.158 3 C 0.145 3.855 4 N -0.593 5.593 5 C 0.231 3.769 6 C -0.539 4.539 7 H 0.060 0.940 8 C 0.067 3.933 9 N -0.889 5.889 10 Si 0.893 3.107 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.524 3.476 15 O -0.574 6.574 16 C -0.105 4.105 17 H 0.118 0.882 18 C -0.140 4.140 19 C -0.060 4.060 20 C -0.077 4.077 21 C -0.087 4.087 22 C -0.154 4.154 23 C 0.085 3.915 24 F -0.146 7.146 25 C -0.151 4.151 26 C -0.084 4.084 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.046 0.954 33 H 0.035 0.965 34 H 0.266 0.734 35 H 0.062 0.938 36 H 0.050 0.950 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.317 1.575 8.428 10.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.177 4.177 3 C 0.022 3.978 4 N -0.322 5.322 5 C 0.111 3.889 6 C -0.578 4.578 7 H 0.078 0.922 8 C -0.136 4.136 9 N -0.527 5.527 10 Si 0.721 3.279 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.201 1.201 14 C 0.312 3.688 15 O -0.455 6.455 16 C -0.126 4.126 17 H 0.136 0.864 18 C -0.198 4.198 19 C -0.098 4.098 20 C -0.078 4.078 21 C -0.105 4.105 22 C -0.173 4.173 23 C 0.066 3.934 24 F -0.125 7.125 25 C -0.170 4.170 26 C -0.102 4.102 27 H 0.109 0.891 28 H 0.113 0.887 29 H 0.123 0.877 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.150 0.850 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.670 1.610 8.509 10.351 hybrid contribution 1.141 0.690 -0.169 1.344 sum -4.529 2.300 8.340 9.765 Atomic orbital electron populations 1.23705 0.95867 1.01237 1.01701 1.23390 0.96136 0.99330 0.98863 1.20404 0.92368 0.94662 0.90407 1.48217 1.12932 1.63197 1.07897 1.19606 0.74936 0.95760 0.98577 1.21439 0.92496 0.93586 1.50245 0.92161 1.24921 0.97869 0.95984 0.94822 1.69907 1.12784 1.21267 1.48732 0.86626 0.79415 0.82858 0.79039 1.19980 1.21137 1.20146 1.20434 0.88328 0.76053 0.83941 1.90575 1.18656 1.52737 1.83519 1.21263 1.00461 0.97623 0.93267 0.86431 1.21822 1.01150 0.95548 1.01245 1.20436 0.95656 1.00438 0.93277 1.20033 0.97256 0.94764 0.95703 1.20949 0.97782 0.98895 0.92832 1.21082 0.96887 0.98065 1.01243 1.17701 0.90259 0.97600 0.87884 1.91470 1.64397 1.94629 1.61978 1.21119 1.01051 1.00660 0.94126 1.21007 0.93777 0.97438 0.97957 0.89118 0.88710 0.87677 0.90937 0.89669 0.93634 0.94669 0.92433 0.91856 0.93103 0.91246 0.90654 0.90323 0.85038 0.85079 0.85003 0.84839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.73 14.32 29.02 0.42 -2.32 16 2 C -0.16 -2.58 9.82 -36.02 -0.35 -2.93 16 3 C 0.14 2.63 5.74 -5.19 -0.03 2.60 16 4 N -0.59 -12.06 2.46 -176.43 -0.43 -12.49 16 5 C 0.23 5.23 4.82 -5.19 -0.03 5.21 16 6 C -0.54 -13.35 8.11 -34.44 -0.28 -13.63 16 7 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 8 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -23.77 13.29 55.43 0.74 -23.03 16 10 Si 0.89 19.99 29.54 -169.99 -5.02 14.97 16 11 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 12 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 14 C 0.52 10.49 6.76 -10.99 -0.07 10.42 16 15 O -0.57 -12.35 15.83 5.56 0.09 -12.27 16 16 C -0.11 -1.85 1.91 -91.77 -0.18 -2.03 16 17 H 0.12 2.33 6.48 -51.93 -0.34 2.00 16 18 C -0.14 -2.26 8.21 37.16 0.31 -1.95 16 19 C -0.06 -0.91 4.21 -27.88 -0.12 -1.03 16 20 C -0.08 -1.07 4.72 -104.62 -0.49 -1.56 16 21 C -0.09 -1.08 8.18 -39.59 -0.32 -1.40 16 22 C -0.15 -1.89 10.03 -39.52 -0.40 -2.28 16 23 C 0.08 1.14 7.30 -39.42 -0.29 0.85 16 24 F -0.15 -2.01 17.27 2.25 0.04 -1.97 16 25 C -0.15 -1.99 10.03 -39.52 -0.40 -2.38 16 26 C -0.08 -1.15 9.70 -39.60 -0.38 -1.53 16 27 H 0.09 1.14 8.06 -52.48 -0.42 0.72 16 28 H 0.09 1.37 7.84 -52.49 -0.41 0.95 16 29 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.07 1.32 7.27 -51.93 -0.38 0.94 16 31 H 0.09 1.51 8.04 -51.93 -0.42 1.10 16 32 H 0.05 1.06 4.85 -51.93 -0.25 0.81 16 33 H 0.04 0.85 8.03 -51.93 -0.42 0.43 16 34 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 35 H 0.06 0.95 6.80 -51.93 -0.35 0.60 16 36 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 37 H 0.07 1.22 5.89 -51.93 -0.31 0.92 16 38 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 39 H 0.08 1.16 8.00 -51.93 -0.42 0.75 16 40 H 0.13 1.41 8.05 -52.49 -0.42 0.99 16 41 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 42 H 0.13 1.51 8.06 -52.48 -0.42 1.09 16 43 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16 LS Contribution 362.89 15.07 5.47 5.47 Total: -1.00 -27.65 362.89 -8.05 -35.70 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -6.21 Total: 5.98 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -2.71 Total: -12.35 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: 0.30 Total: -35.52 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.09 Total: -12.27 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -27.65 -8.05 -35.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814134361.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.891 kcal (2) G-P(sol) polarization free energy of solvation -27.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds