Wall clock time and date at job start Tue Mar 31 2020 09:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 120.00057 * 2 1 4 4 N 1.46505 * 109.46778 * 124.99652 * 3 2 1 5 5 C 1.46499 * 119.99802 * 93.71784 * 4 3 2 6 6 C 1.50700 * 109.47446 * 95.79160 * 5 4 3 7 7 H 1.08008 * 119.99704 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00487 * 180.02562 * 6 5 4 9 9 N 1.31526 * 119.99534 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00363 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47075 * 59.99533 * 10 8 6 12 12 H 1.48501 * 109.47068 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.46923 * 299.99428 * 10 8 6 14 14 C 1.34777 * 119.99782 * 273.70843 * 4 3 2 15 15 O 1.21272 * 120.00168 * 5.24303 * 14 4 3 16 16 C 1.50700 * 119.99756 * 185.23336 * 14 4 3 17 17 H 1.09001 * 109.47041 * 40.40207 * 16 14 4 18 18 C 1.53000 * 109.47369 * 280.40473 * 16 14 4 19 19 C 1.52999 * 109.47204 * 160.40449 * 16 14 4 20 20 C 1.50698 * 109.47577 * 185.00265 * 19 16 14 21 21 C 1.38251 * 119.97170 * 269.72992 * 20 19 16 22 22 C 1.38200 * 120.01879 * 179.72263 * 21 20 19 23 23 C 1.38454 * 119.97828 * 0.56853 * 22 21 20 24 24 F 1.35100 * 120.02843 * 179.68310 * 23 22 21 25 25 C 1.38456 * 119.94624 * 359.70039 * 23 22 21 26 26 C 1.38190 * 119.97842 * 0.02562 * 25 23 22 27 27 H 1.08003 * 120.00252 * 179.97438 * 1 2 3 28 28 H 1.08001 * 119.99970 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.99950 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.47106 * 4.99928 * 3 2 1 31 31 H 1.08995 * 109.47175 * 244.99637 * 3 2 1 32 32 H 1.08999 * 109.46821 * 215.78749 * 5 4 3 33 33 H 1.08999 * 109.47584 * 335.78632 * 5 4 3 34 34 H 0.96997 * 119.99599 * 179.97438 * 9 8 6 35 35 H 1.08997 * 109.47283 * 172.34997 * 18 16 14 36 36 H 1.08999 * 109.47137 * 292.35048 * 18 16 14 37 37 H 1.09001 * 109.47506 * 52.34676 * 18 16 14 38 38 H 1.09003 * 109.47197 * 305.00235 * 19 16 14 39 39 H 1.09004 * 109.47380 * 64.99978 * 19 16 14 40 40 H 1.07993 * 119.98809 * 359.97247 * 21 20 19 41 41 H 1.08009 * 120.00633 * 180.25068 * 22 21 20 42 42 H 1.08007 * 120.00914 * 179.97438 * 25 23 22 43 43 H 1.08006 * 119.98935 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 4.3821 0.9017 0.9487 6 6 5.2514 2.1056 0.6916 7 1 4.8133 3.0925 0.6665 8 6 6.6057 1.9472 0.4874 9 7 7.1390 0.7453 0.5175 10 14 7.6832 3.4395 0.1695 11 1 7.6009 4.3653 1.3277 12 1 9.0906 3.0034 -0.0160 13 1 7.2149 4.1362 -1.0555 14 6 2.5721 1.7524 2.3406 15 8 1.4020 2.0181 2.5161 16 6 3.5549 1.8923 3.4745 17 1 4.4856 2.3169 3.0983 18 6 3.8315 0.5158 4.0825 19 6 2.9697 2.8147 4.5458 20 6 3.9989 3.0530 5.6204 21 6 4.0616 2.2116 6.7156 22 6 5.0088 2.4259 7.6988 23 6 5.8876 3.4906 7.5926 24 9 6.8098 3.7048 8.5563 25 6 5.8202 4.3358 6.4980 26 6 4.8759 4.1164 5.5132 27 1 -0.5401 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4026 -0.9313 32 1 4.7257 0.3910 1.8482 33 1 4.4429 0.2216 0.0991 34 1 8.0917 0.6338 0.3734 35 1 4.6401 0.5953 4.8090 36 1 2.9322 0.1502 4.5783 37 1 4.1191 -0.1789 3.2933 38 1 2.6902 3.7660 4.0929 39 1 2.0876 2.3482 4.9846 40 1 3.3727 1.3843 6.8007 41 1 5.0602 1.7660 8.5523 42 1 6.5049 5.1669 6.4144 43 1 4.8229 4.7758 4.6595 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814134361.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:19:05 Heat of formation + Delta-G solvation = -61.977848 kcal Electronic energy + Delta-G solvation = -25089.756869 eV Core-core repulsion = 21434.915423 eV Total energy + Delta-G solvation = -3654.841446 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.86562 -41.15766 -39.97867 -37.08665 -35.95914 -34.93568 -33.81320 -32.07990 -31.42831 -29.27784 -27.53932 -27.28948 -25.13074 -24.06640 -23.63348 -22.00171 -20.82363 -19.66372 -18.67363 -18.55940 -17.98026 -17.29277 -17.16434 -16.56335 -16.42430 -16.17199 -16.10649 -15.42321 -15.18967 -15.03604 -14.60606 -14.42264 -14.30642 -14.22219 -14.05976 -13.58319 -13.42882 -13.11338 -12.98838 -12.98219 -12.71898 -12.44539 -12.37460 -12.21556 -12.09715 -11.97925 -11.88030 -11.69920 -11.60454 -10.72232 -10.55335 -10.19557 -10.00503 -9.46419 -9.42985 -8.17990 -6.31238 0.17827 0.32127 1.32157 1.42589 1.44137 1.50669 1.82979 2.38151 2.50430 2.70441 3.12444 3.32371 3.64730 3.79251 3.98736 4.03855 4.06028 4.09442 4.20010 4.27534 4.38669 4.43295 4.51675 4.67378 4.79671 4.81190 4.85771 4.93136 4.93762 5.03232 5.03904 5.13739 5.18568 5.19210 5.28176 5.34763 5.43345 5.66667 5.68785 5.69190 5.81914 5.92175 5.97377 6.09651 6.60437 6.85738 7.34361 7.45898 8.87067 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.010381 B = 0.005237 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.579019 B = 5345.270983 C = 7344.285014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.181 4.181 3 C 0.142 3.858 4 N -0.597 5.597 5 C 0.246 3.754 6 C -0.541 4.541 7 H 0.053 0.947 8 C 0.026 3.974 9 N -0.918 5.918 10 Si 0.947 3.053 11 H -0.268 1.268 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.520 3.480 15 O -0.589 6.589 16 C -0.101 4.101 17 H 0.093 0.907 18 C -0.133 4.133 19 C -0.050 4.050 20 C -0.087 4.087 21 C -0.084 4.084 22 C -0.150 4.150 23 C 0.072 3.928 24 F -0.150 7.150 25 C -0.157 4.157 26 C -0.096 4.096 27 H 0.116 0.884 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.041 0.959 33 H 0.018 0.982 34 H 0.267 0.733 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.049 0.951 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.153 0.847 41 H 0.155 0.845 42 H 0.144 0.856 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.889 1.558 9.436 11.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.200 4.200 3 C 0.019 3.981 4 N -0.326 5.326 5 C 0.126 3.874 6 C -0.580 4.580 7 H 0.071 0.929 8 C -0.175 4.175 9 N -0.557 5.557 10 Si 0.772 3.228 11 H -0.193 1.193 12 H -0.210 1.210 13 H -0.199 1.199 14 C 0.309 3.691 15 O -0.471 6.471 16 C -0.122 4.122 17 H 0.111 0.889 18 C -0.190 4.190 19 C -0.087 4.087 20 C -0.088 4.088 21 C -0.102 4.102 22 C -0.169 4.169 23 C 0.053 3.947 24 F -0.128 7.128 25 C -0.176 4.176 26 C -0.114 4.114 27 H 0.134 0.866 28 H 0.115 0.885 29 H 0.123 0.877 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.036 0.964 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.104 0.896 40 H 0.170 0.830 41 H 0.173 0.827 42 H 0.162 0.838 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.256 1.602 9.513 11.498 hybrid contribution 1.243 0.694 -0.494 1.507 sum -5.013 2.295 9.019 10.571 Atomic orbital electron populations 1.23932 0.95183 1.02567 0.98538 1.23243 0.96771 0.98229 1.01748 1.20492 0.92093 0.95901 0.89594 1.48235 1.12360 1.63205 1.08829 1.19265 0.76017 0.94684 0.97479 1.21610 0.92943 0.93812 1.49640 0.92888 1.25558 0.99002 0.98138 0.94757 1.69997 1.13004 1.22836 1.49827 0.85773 0.77821 0.80147 0.79018 1.19299 1.21004 1.19913 1.20849 0.88562 0.75434 0.84239 1.90553 1.19346 1.53464 1.83751 1.21216 0.98710 0.98977 0.93259 0.88901 1.21763 1.02381 0.94066 1.00812 1.20303 0.96135 0.99424 0.92858 1.19986 0.97252 0.95529 0.95991 1.21165 0.97969 0.98966 0.92113 1.21353 0.95992 0.97778 1.01774 1.17925 0.90616 0.98207 0.87947 1.91461 1.64590 1.94708 1.62073 1.21279 1.01139 1.01152 0.93982 1.21114 0.94173 0.97792 0.98339 0.86552 0.88489 0.87660 0.91162 0.90046 0.94090 0.96421 0.92442 0.90732 0.91235 0.93167 0.91433 0.89650 0.82970 0.82694 0.83789 0.84748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.48 14.32 67.78 0.97 -3.51 16 2 C -0.18 -5.78 9.82 25.65 0.25 -5.53 16 3 C 0.14 5.19 5.74 85.63 0.49 5.68 16 4 N -0.60 -24.56 2.46 -830.51 -2.05 -26.61 16 5 C 0.25 11.40 4.82 85.63 0.41 11.81 16 6 C -0.54 -27.16 8.11 25.60 0.21 -26.95 16 7 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 8 C 0.03 1.34 5.46 84.65 0.46 1.80 16 9 N -0.92 -49.46 13.29 21.45 0.28 -49.17 16 10 Si 0.95 40.88 29.54 68.60 2.03 42.90 16 11 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 12 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 13 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 14 C 0.52 20.78 6.76 87.66 0.59 21.37 16 15 O -0.59 -25.01 15.83 -3.01 -0.05 -25.06 16 16 C -0.10 -3.51 1.91 -11.54 -0.02 -3.54 16 17 H 0.09 3.74 6.48 -2.39 -0.02 3.72 16 18 C -0.13 -4.14 8.21 71.98 0.59 -3.55 16 19 C -0.05 -1.46 4.21 29.85 0.13 -1.33 16 20 C -0.09 -2.31 4.72 -19.86 -0.09 -2.40 16 21 C -0.08 -1.90 8.18 22.26 0.18 -1.72 16 22 C -0.15 -3.33 10.03 22.31 0.22 -3.10 16 23 C 0.07 1.82 7.30 22.37 0.16 1.98 16 24 F -0.15 -3.89 17.27 44.97 0.78 -3.12 16 25 C -0.16 -3.97 10.03 22.31 0.22 -3.74 16 26 C -0.10 -2.56 9.70 22.26 0.22 -2.35 16 27 H 0.12 2.58 8.06 -2.91 -0.02 2.56 16 28 H 0.10 2.61 7.84 -2.91 -0.02 2.59 16 29 H 0.11 3.34 8.06 -2.91 -0.02 3.32 16 30 H 0.07 2.57 7.27 -2.39 -0.02 2.55 16 31 H 0.08 2.96 8.04 -2.39 -0.02 2.94 16 32 H 0.04 1.95 4.85 -2.39 -0.01 1.94 16 33 H 0.02 0.88 8.03 -2.39 -0.02 0.86 16 34 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 35 H 0.07 2.14 6.80 -2.39 -0.02 2.12 16 36 H 0.07 1.89 8.13 -2.39 -0.02 1.87 16 37 H 0.05 1.76 5.89 -2.39 -0.01 1.74 16 38 H 0.07 2.06 8.08 -2.39 -0.02 2.05 16 39 H 0.08 2.39 8.00 -2.39 -0.02 2.37 16 40 H 0.15 2.77 8.05 -2.91 -0.02 2.74 16 41 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 42 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 43 H 0.13 3.44 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -57.88 362.89 6.99 -50.89 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: 0.99 Total: 25.25 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: 5.00 Total: -15.09 kcal Atomic # 7 Polarization: -74.02 SS G_CDS: -1.76 Total: -75.78 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.05 Total: -25.06 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.78 Total: -3.12 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.90 kcal Total: -57.88 6.99 -50.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814134361.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.087 kcal (2) G-P(sol) polarization free energy of solvation -57.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds