Wall clock time and date at job start Tue Mar 31 2020 09:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50701 * 119.99398 * 2 1 4 4 N 1.46501 * 109.46864 * 125.00183 * 3 2 1 5 5 C 1.46497 * 119.99854 * 275.47764 * 4 3 2 6 6 C 1.50697 * 109.47549 * 264.09037 * 5 4 3 7 7 H 1.08004 * 119.99663 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00469 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99519 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00105 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47280 * 89.99941 * 10 8 6 12 12 H 1.48497 * 109.47229 * 209.99742 * 10 8 6 13 13 H 1.48498 * 109.47100 * 329.99771 * 10 8 6 14 14 C 1.34775 * 120.00210 * 95.48050 * 4 3 2 15 15 O 1.21283 * 119.99785 * 3.81283 * 14 4 3 16 16 C 1.50696 * 120.00322 * 183.80853 * 14 4 3 17 17 H 1.09007 * 109.46868 * 318.58328 * 16 14 4 18 18 C 1.53002 * 109.47215 * 78.58046 * 16 14 4 19 19 C 1.52998 * 109.47312 * 198.58574 * 16 14 4 20 20 C 1.50699 * 109.47104 * 175.00250 * 19 16 14 21 21 C 1.38248 * 119.97186 * 269.72425 * 20 19 16 22 22 C 1.38199 * 120.02295 * 179.72842 * 21 20 19 23 23 C 1.38460 * 119.97715 * 0.56661 * 22 21 20 24 24 F 1.35093 * 120.02406 * 179.68699 * 23 22 21 25 25 C 1.38460 * 119.94602 * 359.70601 * 23 22 21 26 26 C 1.38202 * 119.97392 * 359.97438 * 25 23 22 27 27 H 1.07999 * 119.99802 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.00040 * 0.02562 * 1 2 3 29 29 H 1.07993 * 120.00386 * 180.02562 * 2 1 3 30 30 H 1.08994 * 109.47592 * 4.99758 * 3 2 1 31 31 H 1.09000 * 109.47205 * 244.99798 * 3 2 1 32 32 H 1.08996 * 109.47138 * 24.09543 * 5 4 3 33 33 H 1.09002 * 109.46707 * 144.08903 * 5 4 3 34 34 H 0.97002 * 119.99618 * 180.02562 * 9 8 6 35 35 H 1.08997 * 109.46835 * 304.90476 * 18 16 14 36 36 H 1.08992 * 109.46986 * 184.90147 * 18 16 14 37 37 H 1.09002 * 109.46473 * 64.90087 * 18 16 14 38 38 H 1.09000 * 109.46969 * 294.99831 * 19 16 14 39 39 H 1.08993 * 109.47551 * 54.99581 * 19 16 14 40 40 H 1.07997 * 119.99053 * 359.97252 * 21 20 19 41 41 H 1.08006 * 120.00893 * 180.24966 * 22 21 20 42 42 H 1.07996 * 120.01269 * 180.02562 * 25 23 22 43 43 H 1.07997 * 119.98074 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5258 1.7521 2.4546 6 6 2.8340 3.2134 2.6559 7 1 3.3285 3.7734 1.8759 8 6 2.4846 3.8356 3.8356 9 7 1.8819 3.1538 4.7852 10 14 2.8660 5.6472 4.0848 11 1 1.7228 6.4644 3.6045 12 1 3.0915 5.9116 5.5285 13 1 4.0869 6.0058 3.3193 14 6 4.2800 0.9703 0.9550 15 8 4.6842 0.6891 -0.1533 16 6 5.2159 0.9152 2.1349 17 1 5.0372 1.7750 2.7807 18 6 4.9694 -0.3736 2.9217 19 6 6.6632 0.9415 1.6395 20 6 7.5971 1.0103 2.8202 21 6 7.9937 2.2382 3.3163 22 6 8.8457 2.3026 4.4026 23 6 9.3113 1.1368 4.9867 24 9 10.1492 1.1986 6.0446 25 6 8.9179 -0.0924 4.4853 26 6 8.0606 -0.1544 3.4031 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8501 -0.9352 -0.0004 30 1 1.3585 2.1317 0.0895 31 1 2.6212 1.4027 -0.9314 32 1 1.4497 1.5944 2.5264 33 1 3.0309 1.1652 3.2217 34 1 1.6358 3.5916 5.6150 35 1 3.9173 -0.4337 3.2001 36 1 5.5839 -0.3728 3.8219 37 1 5.2313 -1.2323 2.3035 38 1 6.8676 0.0369 1.0668 39 1 6.8144 1.8149 1.0052 40 1 7.6346 3.1475 2.8574 41 1 9.1522 3.2620 4.7926 42 1 9.2801 -1.0024 4.9403 43 1 7.7539 -1.1130 3.0117 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814134362.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:19:09 Heat of formation + Delta-G solvation = -52.357914 kcal Electronic energy + Delta-G solvation = -25028.401069 eV Core-core repulsion = 21373.976775 eV Total energy + Delta-G solvation = -3654.424294 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.83229 -39.74578 -38.79984 -35.61353 -34.52529 -33.33720 -32.15869 -31.09744 -30.28122 -27.55533 -26.35838 -25.76048 -23.40545 -22.96212 -22.31514 -20.83967 -19.61806 -18.03255 -17.58252 -16.83915 -16.38550 -16.18421 -15.68793 -15.51166 -15.18950 -14.63318 -14.49306 -14.40595 -13.91780 -13.83645 -13.45359 -13.18912 -13.01311 -12.74363 -12.33017 -12.24066 -11.90244 -11.77160 -11.55230 -11.42445 -11.18076 -11.05120 -10.98074 -10.92201 -10.79436 -10.64854 -10.46508 -10.17908 -9.77813 -9.23352 -9.03764 -8.85323 -8.57309 -8.39987 -7.75785 -6.21472 -4.28986 1.21240 1.30025 2.54387 3.19750 3.27619 3.29075 3.40129 3.63574 4.05173 4.30936 4.32608 4.77215 4.88359 4.95620 5.11471 5.26752 5.28505 5.36092 5.38274 5.46566 5.53158 5.56307 5.84231 5.90724 6.00131 6.05038 6.10517 6.15607 6.17485 6.20411 6.29724 6.31590 6.32757 6.52061 6.60265 6.72445 6.78506 6.89865 6.97148 7.04092 7.20806 7.53433 7.73927 8.03488 8.30933 8.76375 9.00137 9.39024 10.85090 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.011012 B = 0.004961 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.070538 B = 5642.723461 C = 7423.938844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.155 4.155 3 C 0.140 3.860 4 N -0.591 5.591 5 C 0.234 3.766 6 C -0.539 4.539 7 H 0.060 0.940 8 C 0.067 3.933 9 N -0.889 5.889 10 Si 0.893 3.107 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.272 1.272 14 C 0.524 3.476 15 O -0.578 6.578 16 C -0.105 4.105 17 H 0.116 0.884 18 C -0.140 4.140 19 C -0.060 4.060 20 C -0.078 4.078 21 C -0.083 4.083 22 C -0.151 4.151 23 C 0.085 3.915 24 F -0.146 7.146 25 C -0.154 4.154 26 C -0.087 4.087 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.036 0.964 33 H 0.043 0.957 34 H 0.265 0.735 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.945 -5.806 -2.187 10.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.174 4.174 3 C 0.016 3.984 4 N -0.320 5.320 5 C 0.115 3.885 6 C -0.578 4.578 7 H 0.079 0.921 8 C -0.136 4.136 9 N -0.527 5.527 10 Si 0.721 3.279 11 H -0.205 1.205 12 H -0.210 1.210 13 H -0.197 1.197 14 C 0.313 3.687 15 O -0.459 6.459 16 C -0.126 4.126 17 H 0.134 0.866 18 C -0.197 4.197 19 C -0.098 4.098 20 C -0.078 4.078 21 C -0.101 4.101 22 C -0.169 4.169 23 C 0.066 3.934 24 F -0.125 7.125 25 C -0.173 4.173 26 C -0.105 4.105 27 H 0.111 0.889 28 H 0.115 0.885 29 H 0.121 0.879 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.152 0.848 41 H 0.150 0.850 42 H 0.149 0.851 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.085 -5.913 -2.506 10.325 hybrid contribution 0.089 1.105 0.685 1.303 sum 8.174 -4.808 -1.821 9.657 Atomic orbital electron populations 1.23767 0.95790 1.01551 1.01865 1.23372 0.96077 0.99240 0.98751 1.20428 0.92349 0.94594 0.90985 1.48207 1.08233 1.63679 1.11925 1.19519 0.96238 0.95214 0.77549 1.21490 1.39940 0.94950 1.01416 0.92139 1.24922 0.94718 0.98317 0.95674 1.69921 1.39896 1.36439 1.06401 0.86562 0.78942 0.84949 0.77461 1.20527 1.21027 1.19704 1.20443 0.82737 0.75857 0.89672 1.90574 1.76857 1.52040 1.26460 1.21240 0.92679 1.02057 0.96641 0.86591 1.21791 1.02903 0.95420 0.99595 1.20428 0.91581 1.03909 0.93887 1.20033 0.97316 0.92835 0.97631 1.21027 0.95752 0.98234 0.95127 1.21130 1.00335 0.97451 0.98019 1.17706 0.93689 0.94806 0.87225 1.91469 1.69195 1.97337 1.54463 1.21081 1.00931 0.96425 0.98881 1.20945 0.95982 0.98617 0.94965 0.88908 0.88462 0.87923 0.90254 0.89829 0.94619 0.93870 0.92500 0.91511 0.91749 0.92975 0.90317 0.90519 0.84764 0.84970 0.85084 0.85045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.73 14.32 29.01 0.42 -2.32 16 2 C -0.16 -2.51 9.84 -36.03 -0.35 -2.86 16 3 C 0.14 2.55 5.91 -5.19 -0.03 2.52 16 4 N -0.59 -12.08 2.46 -176.44 -0.43 -12.51 16 5 C 0.23 5.38 4.80 -5.20 -0.02 5.35 16 6 C -0.54 -13.56 8.54 -34.44 -0.29 -13.85 16 7 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 8 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -23.93 13.29 55.43 0.74 -23.20 16 10 Si 0.89 20.12 29.54 -169.99 -5.02 15.10 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 13 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 14 C 0.52 10.48 6.79 -10.99 -0.07 10.41 16 15 O -0.58 -12.44 15.60 5.55 0.09 -12.36 16 16 C -0.11 -1.83 1.87 -91.77 -0.17 -2.00 16 17 H 0.12 2.29 6.57 -51.93 -0.34 1.95 16 18 C -0.14 -2.17 8.28 37.16 0.31 -1.86 16 19 C -0.06 -0.91 4.21 -27.88 -0.12 -1.02 16 20 C -0.08 -1.07 4.72 -104.62 -0.49 -1.56 16 21 C -0.08 -1.13 9.70 -39.59 -0.38 -1.52 16 22 C -0.15 -1.96 10.03 -39.51 -0.40 -2.36 16 23 C 0.08 1.13 7.30 -39.42 -0.29 0.84 16 24 F -0.15 -1.99 17.27 2.25 0.04 -1.95 16 25 C -0.15 -1.86 10.03 -39.51 -0.40 -2.26 16 26 C -0.09 -1.06 8.08 -39.59 -0.32 -1.38 16 27 H 0.09 1.14 8.06 -52.49 -0.42 0.72 16 28 H 0.10 1.34 7.84 -52.49 -0.41 0.93 16 29 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 30 H 0.08 1.43 7.76 -51.93 -0.40 1.03 16 31 H 0.08 1.53 7.22 -51.93 -0.37 1.16 16 32 H 0.04 0.88 8.03 -51.93 -0.42 0.46 16 33 H 0.04 1.01 5.05 -51.93 -0.26 0.75 16 34 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 35 H 0.07 1.13 6.44 -51.93 -0.33 0.80 16 36 H 0.06 0.93 6.59 -51.93 -0.34 0.58 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 1.15 8.01 -51.93 -0.42 0.73 16 39 H 0.08 1.19 8.08 -51.93 -0.42 0.77 16 40 H 0.13 1.73 8.06 -52.49 -0.42 1.30 16 41 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 42 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 43 H 0.13 1.37 8.04 -52.49 -0.42 0.95 16 LS Contribution 363.53 15.07 5.48 5.48 Total: -1.00 -27.91 363.53 -8.06 -35.97 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -6.23 Total: 5.71 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -2.72 Total: -12.26 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: 0.30 Total: -35.71 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.09 Total: -12.36 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -27.91 -8.06 -35.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814134362.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.385 kcal (2) G-P(sol) polarization free energy of solvation -27.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds