Wall clock time and date at job start Tue Mar 31 2020 09:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50701 * 119.99398 * 2 1 4 4 N 1.46501 * 109.46864 * 125.00183 * 3 2 1 5 5 C 1.46497 * 119.99854 * 275.47764 * 4 3 2 6 6 C 1.50697 * 109.47549 * 264.09037 * 5 4 3 7 7 H 1.08004 * 119.99663 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00469 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99519 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00105 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47280 * 89.99941 * 10 8 6 12 12 H 1.48497 * 109.47229 * 209.99742 * 10 8 6 13 13 H 1.48498 * 109.47100 * 329.99771 * 10 8 6 14 14 C 1.34775 * 120.00210 * 95.48050 * 4 3 2 15 15 O 1.21283 * 119.99785 * 3.81283 * 14 4 3 16 16 C 1.50696 * 120.00322 * 183.80853 * 14 4 3 17 17 H 1.09007 * 109.46868 * 318.58328 * 16 14 4 18 18 C 1.53002 * 109.47215 * 78.58046 * 16 14 4 19 19 C 1.52998 * 109.47312 * 198.58574 * 16 14 4 20 20 C 1.50699 * 109.47104 * 175.00250 * 19 16 14 21 21 C 1.38248 * 119.97186 * 269.72425 * 20 19 16 22 22 C 1.38199 * 120.02295 * 179.72842 * 21 20 19 23 23 C 1.38460 * 119.97715 * 0.56661 * 22 21 20 24 24 F 1.35093 * 120.02406 * 179.68699 * 23 22 21 25 25 C 1.38460 * 119.94602 * 359.70601 * 23 22 21 26 26 C 1.38202 * 119.97392 * 359.97438 * 25 23 22 27 27 H 1.07999 * 119.99802 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.00040 * 0.02562 * 1 2 3 29 29 H 1.07993 * 120.00386 * 180.02562 * 2 1 3 30 30 H 1.08994 * 109.47592 * 4.99758 * 3 2 1 31 31 H 1.09000 * 109.47205 * 244.99798 * 3 2 1 32 32 H 1.08996 * 109.47138 * 24.09543 * 5 4 3 33 33 H 1.09002 * 109.46707 * 144.08903 * 5 4 3 34 34 H 0.97002 * 119.99618 * 180.02562 * 9 8 6 35 35 H 1.08997 * 109.46835 * 304.90476 * 18 16 14 36 36 H 1.08992 * 109.46986 * 184.90147 * 18 16 14 37 37 H 1.09002 * 109.46473 * 64.90087 * 18 16 14 38 38 H 1.09000 * 109.46969 * 294.99831 * 19 16 14 39 39 H 1.08993 * 109.47551 * 54.99581 * 19 16 14 40 40 H 1.07997 * 119.99053 * 359.97252 * 21 20 19 41 41 H 1.08006 * 120.00893 * 180.24966 * 22 21 20 42 42 H 1.07996 * 120.01269 * 180.02562 * 25 23 22 43 43 H 1.07997 * 119.98074 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5258 1.7521 2.4546 6 6 2.8340 3.2134 2.6559 7 1 3.3285 3.7734 1.8759 8 6 2.4846 3.8356 3.8356 9 7 1.8819 3.1538 4.7852 10 14 2.8660 5.6472 4.0848 11 1 1.7228 6.4644 3.6045 12 1 3.0915 5.9116 5.5285 13 1 4.0869 6.0058 3.3193 14 6 4.2800 0.9703 0.9550 15 8 4.6842 0.6891 -0.1533 16 6 5.2159 0.9152 2.1349 17 1 5.0372 1.7750 2.7807 18 6 4.9694 -0.3736 2.9217 19 6 6.6632 0.9415 1.6395 20 6 7.5971 1.0103 2.8202 21 6 7.9937 2.2382 3.3163 22 6 8.8457 2.3026 4.4026 23 6 9.3113 1.1368 4.9867 24 9 10.1492 1.1986 6.0446 25 6 8.9179 -0.0924 4.4853 26 6 8.0606 -0.1544 3.4031 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8501 -0.9352 -0.0004 30 1 1.3585 2.1317 0.0895 31 1 2.6212 1.4027 -0.9314 32 1 1.4497 1.5944 2.5264 33 1 3.0309 1.1652 3.2217 34 1 1.6358 3.5916 5.6150 35 1 3.9173 -0.4337 3.2001 36 1 5.5839 -0.3728 3.8219 37 1 5.2313 -1.2323 2.3035 38 1 6.8676 0.0369 1.0668 39 1 6.8144 1.8149 1.0052 40 1 7.6346 3.1475 2.8574 41 1 9.1522 3.2620 4.7926 42 1 9.2801 -1.0024 4.9403 43 1 7.7539 -1.1130 3.0117 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814134362.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:19:08 Heat of formation + Delta-G solvation = -64.022953 kcal Electronic energy + Delta-G solvation = -25028.906903 eV Core-core repulsion = 21373.976775 eV Total energy + Delta-G solvation = -3654.930128 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.86499 -41.17770 -39.98591 -37.16175 -35.92881 -34.96079 -33.81489 -32.08061 -31.43535 -29.37627 -27.54262 -27.24317 -25.13098 -24.06171 -23.62406 -22.01790 -20.89888 -19.59277 -18.69014 -18.57689 -17.94794 -17.30561 -17.24557 -16.56727 -16.41943 -16.23642 -16.05759 -15.73353 -15.24863 -14.90012 -14.47287 -14.40845 -14.33341 -14.24478 -14.00367 -13.59270 -13.35801 -13.08985 -12.99891 -12.91505 -12.78734 -12.54756 -12.37340 -12.25435 -12.12715 -12.07703 -11.90015 -11.70461 -11.62753 -10.73219 -10.57117 -10.22025 -10.00417 -9.47948 -9.44235 -8.19497 -6.33282 0.17725 0.32102 1.29646 1.40099 1.43137 1.51455 1.80112 2.36852 2.49737 2.69663 3.11054 3.32459 3.61268 3.79230 3.98102 4.03325 4.03913 4.13558 4.14928 4.24761 4.38606 4.42543 4.50851 4.67553 4.79940 4.81386 4.86139 4.92574 4.95031 5.03359 5.03887 5.12891 5.17937 5.19271 5.26612 5.33708 5.38629 5.63520 5.66549 5.67580 5.76050 5.95230 5.97527 6.08845 6.57755 6.83745 7.31973 7.43315 8.85815 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.011012 B = 0.004961 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.070538 B = 5642.723461 C = 7423.938844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.178 4.178 3 C 0.137 3.863 4 N -0.596 5.596 5 C 0.252 3.748 6 C -0.545 4.545 7 H 0.050 0.950 8 C 0.027 3.973 9 N -0.916 5.916 10 Si 0.948 3.052 11 H -0.276 1.276 12 H -0.281 1.281 13 H -0.269 1.269 14 C 0.519 3.481 15 O -0.594 6.594 16 C -0.100 4.100 17 H 0.090 0.910 18 C -0.132 4.132 19 C -0.050 4.050 20 C -0.088 4.088 21 C -0.096 4.096 22 C -0.157 4.157 23 C 0.073 3.927 24 F -0.149 7.149 25 C -0.150 4.150 26 C -0.084 4.084 27 H 0.119 0.881 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.017 0.983 33 H 0.038 0.962 34 H 0.267 0.733 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.133 0.867 41 H 0.144 0.856 42 H 0.156 0.844 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.340 -6.517 -1.995 10.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.197 4.197 3 C 0.015 3.985 4 N -0.325 5.325 5 C 0.132 3.868 6 C -0.583 4.583 7 H 0.069 0.931 8 C -0.174 4.174 9 N -0.555 5.555 10 Si 0.774 3.226 11 H -0.202 1.202 12 H -0.207 1.207 13 H -0.193 1.193 14 C 0.309 3.691 15 O -0.477 6.477 16 C -0.121 4.121 17 H 0.108 0.892 18 C -0.189 4.189 19 C -0.088 4.088 20 C -0.088 4.088 21 C -0.114 4.114 22 C -0.175 4.175 23 C 0.053 3.947 24 F -0.128 7.128 25 C -0.169 4.169 26 C -0.102 4.102 27 H 0.137 0.863 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.036 0.964 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.151 0.849 41 H 0.162 0.838 42 H 0.174 0.826 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 8.478 -6.623 -2.330 11.008 hybrid contribution -0.076 1.314 0.590 1.442 sum 8.402 -5.309 -1.740 10.090 Atomic orbital electron populations 1.24017 0.95098 1.02975 0.98507 1.23196 0.96712 0.98010 1.01799 1.20508 0.92115 0.95955 0.89958 1.48222 1.08974 1.63678 1.11599 1.19138 0.94859 0.94142 0.78697 1.21651 1.39520 0.95982 1.01164 0.93129 1.25561 0.94595 1.01810 0.95460 1.70004 1.40839 1.37881 1.06804 0.85694 0.78813 0.80691 0.77393 1.20208 1.20689 1.19314 1.20897 0.82751 0.75232 0.90204 1.90555 1.77029 1.52861 1.27259 1.21201 0.93629 1.01990 0.95328 0.89167 1.21741 1.02044 0.94998 1.00160 1.20298 0.90275 1.03789 0.94409 1.19974 0.97662 0.93601 0.97543 1.21115 0.96288 0.98427 0.95616 1.21279 1.00160 0.98249 0.97838 1.17927 0.93927 0.95447 0.87352 1.91460 1.69331 1.97389 1.54640 1.21357 1.00153 0.96924 0.98417 1.21165 0.95430 0.98932 0.94639 0.86325 0.88085 0.87900 0.90625 0.90364 0.96446 0.94391 0.92387 0.93251 0.90387 0.91116 0.89540 0.91598 0.84878 0.83802 0.82627 0.82852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.50 14.32 67.78 0.97 -3.53 16 2 C -0.18 -5.65 9.84 25.64 0.25 -5.39 16 3 C 0.14 5.06 5.91 85.63 0.51 5.57 16 4 N -0.60 -24.72 2.46 -830.52 -2.04 -26.76 16 5 C 0.25 11.79 4.80 85.63 0.41 12.20 16 6 C -0.54 -27.73 8.54 25.60 0.22 -27.51 16 7 H 0.05 2.63 7.81 -2.91 -0.02 2.61 16 8 C 0.03 1.37 5.46 84.65 0.46 1.83 16 9 N -0.92 -49.54 13.29 21.45 0.28 -49.26 16 10 Si 0.95 41.16 29.54 68.60 2.03 43.18 16 11 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 12 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 13 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 14 C 0.52 20.93 6.79 87.66 0.60 21.53 16 15 O -0.59 -25.64 15.60 -3.04 -0.05 -25.68 16 16 C -0.10 -3.50 1.87 -11.54 -0.02 -3.52 16 17 H 0.09 3.63 6.57 -2.38 -0.02 3.62 16 18 C -0.13 -3.98 8.28 71.98 0.60 -3.38 16 19 C -0.05 -1.48 4.21 29.85 0.13 -1.35 16 20 C -0.09 -2.30 4.72 -19.86 -0.09 -2.39 16 21 C -0.10 -2.57 9.70 22.26 0.22 -2.36 16 22 C -0.16 -3.94 10.03 22.31 0.22 -3.72 16 23 C 0.07 1.81 7.30 22.38 0.16 1.97 16 24 F -0.15 -3.85 17.27 44.97 0.78 -3.07 16 25 C -0.15 -3.25 10.03 22.31 0.22 -3.02 16 26 C -0.08 -1.85 8.08 22.26 0.18 -1.67 16 27 H 0.12 2.58 8.06 -2.91 -0.02 2.55 16 28 H 0.10 2.63 7.84 -2.91 -0.02 2.61 16 29 H 0.10 3.25 8.06 -2.91 -0.02 3.23 16 30 H 0.08 2.78 7.76 -2.39 -0.02 2.76 16 31 H 0.08 2.92 7.22 -2.39 -0.02 2.91 16 32 H 0.02 0.87 8.03 -2.39 -0.02 0.85 16 33 H 0.04 1.82 5.05 -2.39 -0.01 1.81 16 34 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 35 H 0.05 1.65 6.44 -2.39 -0.02 1.64 16 36 H 0.08 2.12 6.59 -2.39 -0.02 2.11 16 37 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.09 2.40 8.01 -2.39 -0.02 2.38 16 39 H 0.07 2.06 8.08 -2.39 -0.02 2.04 16 40 H 0.13 3.47 8.06 -2.91 -0.02 3.45 16 41 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 42 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 43 H 0.15 2.69 8.04 -2.91 -0.02 2.66 16 Total: -1.00 -58.78 363.53 7.02 -51.76 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 0.99 Total: 24.60 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: 5.03 Total: -14.76 kcal Atomic # 7 Polarization: -74.26 SS G_CDS: -1.76 Total: -76.01 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.05 Total: -25.68 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.78 Total: -3.07 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.18 kcal Total: -58.78 7.02 -51.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814134362.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.264 kcal (2) G-P(sol) polarization free energy of solvation -58.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds