Wall clock time and date at job start Tue Mar 31 2020 08:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47435 * 2 1 4 4 C 1.53003 * 109.46687 * 119.99758 * 2 1 3 5 5 N 1.46900 * 109.47232 * 66.58248 * 4 2 1 6 6 C 1.46900 * 110.99746 * 211.10882 * 5 4 2 7 7 C 1.50703 * 109.47191 * 72.22123 * 6 5 4 8 8 H 1.08000 * 119.99864 * 5.06931 * 7 6 5 9 9 C 1.37876 * 119.99878 * 185.06943 * 7 6 5 10 10 N 1.31514 * 120.00438 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99808 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47267 * 89.99892 * 11 9 7 13 13 H 1.48502 * 109.47178 * 209.99895 * 11 9 7 14 14 H 1.48497 * 109.47387 * 330.00105 * 11 9 7 15 15 C 1.46899 * 110.99883 * 87.15552 * 5 4 2 16 16 C 1.50692 * 109.46992 * 292.17212 * 15 5 4 17 17 C 1.34729 * 125.66608 * 97.96506 * 16 15 5 18 18 C 1.40947 * 107.02604 * 179.71276 * 17 16 15 19 19 C 1.35885 * 106.74079 * 0.39982 * 18 17 16 20 20 C 1.47888 * 125.92497 * 179.85473 * 19 18 17 21 21 N 1.34216 * 126.70360 * 359.74394 * 20 19 18 22 22 N 1.28980 * 107.25255 * 179.97438 * 21 20 19 23 23 N 1.28718 * 108.99782 * 0.02562 * 22 21 20 24 24 H 0.97001 * 125.32459 * 179.97438 * 23 22 21 25 25 N 1.28878 * 109.36631 * 359.97438 * 23 22 21 26 26 O 1.34289 * 125.67320 * 277.91912 * 16 15 5 27 27 H 1.09002 * 109.47133 * 304.69782 * 1 2 3 28 28 H 1.09004 * 109.46558 * 64.69228 * 1 2 3 29 29 H 1.08999 * 109.47343 * 184.69257 * 1 2 3 30 30 H 1.08996 * 109.47257 * 239.99327 * 2 1 3 31 31 H 1.08997 * 109.47081 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47108 * 299.99836 * 3 2 1 33 33 H 1.09005 * 109.47433 * 59.99164 * 3 2 1 34 34 H 1.09005 * 109.47451 * 306.57808 * 4 2 1 35 35 H 1.09000 * 109.46792 * 186.58308 * 4 2 1 36 36 H 1.08999 * 109.46961 * 192.21704 * 6 5 4 37 37 H 1.08995 * 109.47386 * 312.21979 * 6 5 4 38 38 H 0.97000 * 120.00187 * 180.02562 * 10 9 7 39 39 H 1.09007 * 109.46487 * 172.17602 * 15 5 4 40 40 H 1.08994 * 109.47167 * 52.18027 * 15 5 4 41 41 H 1.08002 * 126.48705 * 359.97438 * 17 16 15 42 42 H 1.08000 * 126.62764 * 180.25677 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6841 -2.1444 1.1726 6 6 1.4592 -2.7037 2.5123 7 6 0.1602 -2.1765 3.0651 8 1 -0.4781 -1.5601 2.4495 9 6 -0.2134 -2.4811 4.3569 10 7 0.5636 -3.2321 5.1065 11 14 -1.8232 -1.8270 5.0424 12 1 -2.9113 -2.7982 4.7630 13 1 -1.6952 -1.6357 6.5095 14 1 -2.1431 -0.5270 4.3999 15 6 2.7118 -2.9057 0.4500 16 6 2.7128 -2.4969 -1.0004 17 6 3.5527 -1.6079 -1.5654 18 6 3.2124 -1.5288 -2.9309 19 6 2.1674 -2.3757 -3.1235 20 6 1.4733 -2.6195 -4.4064 21 7 1.7496 -2.0486 -5.5892 22 7 0.9185 -2.5302 -6.4500 23 7 0.1422 -3.3695 -5.8586 24 1 -0.5713 -3.8699 -6.2847 25 7 0.4609 -3.4414 -4.6120 26 8 1.8772 -2.9588 -1.9447 27 1 -0.3633 0.5850 0.8449 28 1 -0.3632 0.4393 -0.9291 29 1 -0.3634 -1.0242 0.0841 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.5836 -0.2798 2.1354 35 1 3.1235 -0.6203 1.3102 36 1 1.4125 -3.7909 2.4489 37 1 2.2785 -2.4129 3.1697 38 1 0.3006 -3.4466 6.0152 39 1 2.4958 -3.9714 0.5270 40 1 3.6895 -2.7008 0.8860 41 1 4.3407 -1.0626 -1.0673 42 1 3.6886 -0.9122 -3.6789 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824255539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:32 Heat of formation + Delta-G solvation = 142.805065 kcal Electronic energy + Delta-G solvation = -25301.865269 eV Core-core repulsion = 21708.116589 eV Total energy + Delta-G solvation = -3593.748680 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.63661 -42.56506 -37.56668 -34.67276 -34.07701 -33.61398 -33.00986 -32.47468 -30.24151 -27.31555 -26.57042 -26.36335 -24.77148 -24.44057 -22.96080 -21.64566 -20.91038 -20.19582 -19.44495 -19.34418 -17.38802 -17.32675 -16.34765 -16.04636 -15.19507 -14.67288 -14.59038 -14.25485 -14.07685 -13.63805 -13.28624 -13.02897 -12.94919 -12.76660 -12.54119 -12.27982 -12.07508 -11.70026 -11.63312 -11.49489 -11.34891 -11.30853 -11.19611 -11.02248 -10.82703 -10.63601 -10.42497 -10.27573 -10.01690 -9.81812 -9.43317 -9.28091 -8.45271 -8.09192 -7.37038 -6.04365 -4.05174 0.73746 1.14835 1.96574 2.30190 2.58620 2.84912 3.31643 3.37935 3.41825 3.73398 4.27036 4.41700 4.79604 4.96568 5.03761 5.16711 5.23335 5.31099 5.46135 5.51585 5.64445 5.77812 5.81342 5.84190 5.99342 5.99848 6.07533 6.15992 6.16503 6.31642 6.38705 6.48007 6.51771 6.56884 6.67617 6.98203 7.06168 7.15022 7.24507 7.28152 7.80295 7.93435 8.02846 8.11696 8.47350 9.03878 9.59266 11.06116 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.017507 B = 0.003676 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.956173 B = 7616.034611 C = 7941.252923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.104 4.104 3 C -0.142 4.142 4 C 0.066 3.934 5 N -0.529 5.529 6 C 0.194 3.806 7 C -0.503 4.503 8 H 0.067 0.933 9 C 0.056 3.944 10 N -0.900 5.900 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.288 1.288 14 H -0.273 1.273 15 C 0.120 3.880 16 C 0.067 3.933 17 C -0.222 4.222 18 C -0.128 4.128 19 C 0.026 3.974 20 C 0.263 3.737 21 N -0.257 5.257 22 N -0.049 5.049 23 N -0.226 5.226 24 H 0.477 0.523 25 N -0.282 5.282 26 O -0.144 6.144 27 H 0.046 0.954 28 H 0.031 0.969 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.083 0.917 35 H 0.023 0.977 36 H 0.028 0.972 37 H -0.001 1.001 38 H 0.261 0.739 39 H 0.091 0.909 40 H 0.065 0.935 41 H 0.154 0.846 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.078 2.241 -18.030 18.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.122 4.122 3 C -0.200 4.200 4 C -0.062 4.062 5 N -0.254 5.254 6 C 0.069 3.931 7 C -0.541 4.541 8 H 0.085 0.915 9 C -0.145 4.145 10 N -0.539 5.539 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.214 1.214 14 H -0.198 1.198 15 C -0.008 4.008 16 C 0.013 3.987 17 C -0.242 4.242 18 C -0.150 4.150 19 C -0.028 4.028 20 C -0.016 4.016 21 N -0.132 5.132 22 N -0.044 5.044 23 N -0.073 5.073 24 H 0.331 0.669 25 N -0.134 5.134 26 O -0.038 6.038 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.042 0.958 36 H 0.046 0.954 37 H 0.017 0.983 38 H 0.071 0.929 39 H 0.109 0.891 40 H 0.083 0.917 41 H 0.172 0.828 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.282 1.965 -18.673 19.061 hybrid contribution -0.486 0.087 1.078 1.186 sum 2.796 2.052 -17.595 17.934 Atomic orbital electron populations 1.21675 0.95217 1.02928 0.99255 1.21431 0.96590 0.94767 0.99449 1.21788 1.00186 0.97014 1.01043 1.22140 0.96664 0.88932 0.98472 1.62053 1.39905 1.01630 1.21796 1.19802 0.96701 0.95193 0.81356 1.21162 1.04445 1.31405 0.97134 0.91492 1.24967 0.97233 0.95421 0.96918 1.69949 1.37320 1.37716 1.08959 0.86533 0.83795 0.79397 0.77921 1.20682 1.21381 1.19814 1.20748 0.96074 1.00191 0.83816 1.22938 0.89163 0.95528 0.91074 1.21478 1.04913 1.03954 0.93886 1.21706 0.96457 0.99751 0.97132 1.17704 1.00006 1.02796 0.82256 1.21960 0.92933 0.94173 0.92503 1.76125 1.18361 1.21313 0.97416 1.78897 1.00168 1.03295 1.22035 1.47701 1.26205 1.29075 1.04284 0.66886 1.75257 1.16421 1.22847 0.98850 1.84109 1.49518 1.54850 1.15322 0.93466 0.95003 0.91014 0.90474 0.93405 0.93425 0.93045 0.89871 0.95836 0.95395 0.98285 0.92945 0.89099 0.91725 0.82818 0.82490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 9.14 37.16 0.34 -2.03 16 2 C -0.10 -1.69 2.70 -90.62 -0.24 -1.94 16 3 C -0.14 -1.98 9.19 37.16 0.34 -1.64 16 4 C 0.07 1.21 4.08 -3.82 -0.02 1.20 16 5 N -0.53 -10.61 3.82 -237.52 -0.91 -11.52 16 6 C 0.19 4.73 4.67 -4.97 -0.02 4.71 16 7 C -0.50 -13.54 8.34 -34.44 -0.29 -13.83 16 8 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 9 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 10 N -0.90 -25.98 13.29 55.43 0.74 -25.25 16 11 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 15 C 0.12 2.00 5.43 -4.98 -0.03 1.97 16 16 C 0.07 1.04 4.89 -35.56 -0.17 0.86 16 17 C -0.22 -2.93 8.58 -39.80 -0.34 -3.28 16 18 C -0.13 -1.65 10.68 -39.40 -0.42 -2.07 16 19 C 0.03 0.38 7.26 -36.48 -0.26 0.11 16 20 C 0.26 3.71 8.20 -156.24 -1.28 2.43 16 21 N -0.26 -3.41 12.53 32.08 0.40 -3.01 16 22 N -0.05 -0.54 13.46 60.35 0.81 0.28 16 23 N -0.23 -2.04 7.90 60.35 0.48 -1.56 16 24 H 0.48 1.83 8.96 -340.33 -3.05 -1.22 16 25 N -0.28 -3.63 12.41 32.10 0.40 -3.23 16 26 O -0.14 -2.41 10.67 4.72 0.05 -2.36 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 1.45 7.68 -51.93 -0.40 1.05 16 30 H 0.08 1.26 3.63 -51.93 -0.19 1.07 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.08 1.74 7.06 -51.93 -0.37 1.37 16 35 H 0.02 0.39 7.64 -51.93 -0.40 0.00 16 36 H 0.03 0.72 7.78 -51.93 -0.40 0.32 16 37 H 0.00 -0.02 8.05 -51.93 -0.42 -0.44 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.09 1.51 7.82 -51.93 -0.41 1.11 16 40 H 0.06 0.97 7.84 -51.93 -0.41 0.56 16 41 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 42 H 0.16 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 352.97 15.07 5.32 5.32 Total: -1.00 -31.20 352.97 -8.77 -39.97 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -8.54 Total: -2.92 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -2.50 Total: -12.06 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 1.92 Total: -44.29 kcal Atomic # 8 Polarization: -2.41 SS G_CDS: 0.05 Total: -2.36 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.20 -8.77 -39.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824255539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.773 kcal (2) G-P(sol) polarization free energy of solvation -31.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds