Wall clock time and date at job start Tue Mar 31 2020 08:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47435 * 2 1 4 4 C 1.53003 * 109.46687 * 119.99758 * 2 1 3 5 5 N 1.46900 * 109.47232 * 66.58248 * 4 2 1 6 6 C 1.46900 * 110.99746 * 211.10882 * 5 4 2 7 7 C 1.50703 * 109.47191 * 72.22123 * 6 5 4 8 8 H 1.08000 * 119.99864 * 5.06931 * 7 6 5 9 9 C 1.37876 * 119.99878 * 185.06943 * 7 6 5 10 10 N 1.31514 * 120.00438 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99808 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47267 * 89.99892 * 11 9 7 13 13 H 1.48502 * 109.47178 * 209.99895 * 11 9 7 14 14 H 1.48497 * 109.47387 * 330.00105 * 11 9 7 15 15 C 1.46899 * 110.99883 * 87.15552 * 5 4 2 16 16 C 1.50692 * 109.46992 * 292.17212 * 15 5 4 17 17 C 1.34729 * 125.66608 * 97.96506 * 16 15 5 18 18 C 1.40947 * 107.02604 * 179.71276 * 17 16 15 19 19 C 1.35885 * 106.74079 * 0.39982 * 18 17 16 20 20 C 1.47888 * 125.92497 * 179.85473 * 19 18 17 21 21 N 1.34216 * 126.70360 * 359.74394 * 20 19 18 22 22 N 1.28980 * 107.25255 * 179.97438 * 21 20 19 23 23 N 1.28718 * 108.99782 * 0.02562 * 22 21 20 24 24 H 0.97001 * 125.32459 * 179.97438 * 23 22 21 25 25 N 1.28878 * 109.36631 * 359.97438 * 23 22 21 26 26 O 1.34289 * 125.67320 * 277.91912 * 16 15 5 27 27 H 1.09002 * 109.47133 * 304.69782 * 1 2 3 28 28 H 1.09004 * 109.46558 * 64.69228 * 1 2 3 29 29 H 1.08999 * 109.47343 * 184.69257 * 1 2 3 30 30 H 1.08996 * 109.47257 * 239.99327 * 2 1 3 31 31 H 1.08997 * 109.47081 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47108 * 299.99836 * 3 2 1 33 33 H 1.09005 * 109.47433 * 59.99164 * 3 2 1 34 34 H 1.09005 * 109.47451 * 306.57808 * 4 2 1 35 35 H 1.09000 * 109.46792 * 186.58308 * 4 2 1 36 36 H 1.08999 * 109.46961 * 192.21704 * 6 5 4 37 37 H 1.08995 * 109.47386 * 312.21979 * 6 5 4 38 38 H 0.97000 * 120.00187 * 180.02562 * 10 9 7 39 39 H 1.09007 * 109.46487 * 172.17602 * 15 5 4 40 40 H 1.08994 * 109.47167 * 52.18027 * 15 5 4 41 41 H 1.08002 * 126.48705 * 359.97438 * 17 16 15 42 42 H 1.08000 * 126.62764 * 180.25677 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6841 -2.1444 1.1726 6 6 1.4592 -2.7037 2.5123 7 6 0.1602 -2.1765 3.0651 8 1 -0.4781 -1.5601 2.4495 9 6 -0.2134 -2.4811 4.3569 10 7 0.5636 -3.2321 5.1065 11 14 -1.8232 -1.8270 5.0424 12 1 -2.9113 -2.7982 4.7630 13 1 -1.6952 -1.6357 6.5095 14 1 -2.1431 -0.5270 4.3999 15 6 2.7118 -2.9057 0.4500 16 6 2.7128 -2.4969 -1.0004 17 6 3.5527 -1.6079 -1.5654 18 6 3.2124 -1.5288 -2.9309 19 6 2.1674 -2.3757 -3.1235 20 6 1.4733 -2.6195 -4.4064 21 7 1.7496 -2.0486 -5.5892 22 7 0.9185 -2.5302 -6.4500 23 7 0.1422 -3.3695 -5.8586 24 1 -0.5713 -3.8699 -6.2847 25 7 0.4609 -3.4414 -4.6120 26 8 1.8772 -2.9588 -1.9447 27 1 -0.3633 0.5850 0.8449 28 1 -0.3632 0.4393 -0.9291 29 1 -0.3634 -1.0242 0.0841 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.5836 -0.2798 2.1354 35 1 3.1235 -0.6203 1.3102 36 1 1.4125 -3.7909 2.4489 37 1 2.2785 -2.4129 3.1697 38 1 0.3006 -3.4466 6.0152 39 1 2.4958 -3.9714 0.5270 40 1 3.6895 -2.7008 0.8860 41 1 4.3407 -1.0626 -1.0673 42 1 3.6886 -0.9122 -3.6789 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824255539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:31 Heat of formation + Delta-G solvation = 122.311409 kcal Electronic energy + Delta-G solvation = -25302.753940 eV Core-core repulsion = 21708.116589 eV Total energy + Delta-G solvation = -3594.637351 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.55761 -43.68962 -39.07484 -35.64605 -35.53560 -34.72802 -34.43582 -33.95666 -31.56076 -29.03287 -27.84807 -27.71935 -25.98226 -25.67188 -24.30881 -22.70904 -22.51881 -21.35679 -20.81378 -20.24819 -18.60626 -18.31597 -18.17751 -17.30328 -16.72152 -16.28902 -16.04083 -15.62404 -15.20751 -14.99706 -14.76370 -14.30699 -14.12001 -13.97331 -13.81385 -13.59927 -13.47254 -13.23416 -12.95481 -12.88072 -12.72239 -12.53392 -12.42265 -12.36911 -12.27149 -12.23272 -11.92635 -11.70726 -11.57862 -11.42902 -11.27394 -10.57106 -10.52709 -9.22916 -8.98552 -8.16225 -6.24193 -0.23289 0.17208 1.13911 1.22523 1.41259 1.42000 1.52765 1.63473 1.81356 2.42191 2.75309 3.16267 3.22905 3.35830 3.81653 4.03671 4.07071 4.11568 4.24504 4.28538 4.38208 4.45384 4.55349 4.71440 4.78117 4.87935 4.92456 4.96851 4.99064 5.03505 5.13169 5.18496 5.26649 5.29622 5.39406 5.50269 5.53050 5.61460 5.67192 5.74446 6.06934 6.12436 6.39422 6.62974 6.92244 7.00113 7.44663 8.93661 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.017507 B = 0.003676 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.956173 B = 7616.034611 C = 7941.252923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.097 4.097 3 C -0.138 4.138 4 C 0.071 3.929 5 N -0.539 5.539 6 C 0.210 3.790 7 C -0.512 4.512 8 H 0.061 0.939 9 C 0.006 3.994 10 N -0.933 5.933 11 Si 0.958 3.042 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.267 1.267 15 C 0.121 3.879 16 C 0.042 3.958 17 C -0.200 4.200 18 C -0.118 4.118 19 C 0.013 3.987 20 C 0.248 3.752 21 N -0.270 5.270 22 N -0.044 5.044 23 N -0.196 5.196 24 H 0.496 0.504 25 N -0.299 5.299 26 O -0.171 6.171 27 H 0.037 0.963 28 H 0.048 0.952 29 H 0.039 0.961 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.046 0.954 34 H 0.051 0.949 35 H 0.043 0.957 36 H 0.005 0.995 37 H -0.023 1.023 38 H 0.263 0.737 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.180 0.820 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.433 3.716 -19.839 20.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.116 4.116 3 C -0.195 4.195 4 C -0.057 4.057 5 N -0.264 5.264 6 C 0.084 3.916 7 C -0.551 4.551 8 H 0.079 0.921 9 C -0.192 4.192 10 N -0.574 5.574 11 Si 0.783 3.217 12 H -0.203 1.203 13 H -0.208 1.208 14 H -0.192 1.192 15 C -0.007 4.007 16 C -0.011 4.011 17 C -0.220 4.220 18 C -0.140 4.140 19 C -0.040 4.040 20 C -0.031 4.031 21 N -0.144 5.144 22 N -0.039 5.039 23 N -0.047 5.047 24 H 0.356 0.644 25 N -0.152 5.152 26 O -0.066 6.066 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.023 0.977 37 H -0.005 1.005 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.197 0.803 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 3.632 3.444 -20.518 21.120 hybrid contribution -0.622 -0.433 1.495 1.677 sum 3.010 3.011 -19.023 19.494 Atomic orbital electron populations 1.21615 0.96556 1.00805 0.99707 1.21399 0.95389 0.96416 0.98358 1.21746 1.01417 0.94820 1.01543 1.22113 0.97585 0.87716 0.98305 1.61928 1.42315 1.02858 1.19263 1.19413 0.95053 0.93736 0.83390 1.21441 1.05287 1.31003 0.97355 0.92108 1.25760 1.00454 0.95677 0.97332 1.70058 1.39065 1.38957 1.09303 0.85552 0.79822 0.78950 0.77340 1.20272 1.20776 1.19161 1.20704 0.95905 0.99268 0.84799 1.22673 0.90672 0.97423 0.90332 1.21761 1.04100 1.02264 0.93873 1.22008 0.95513 0.99095 0.97406 1.18081 1.00761 1.03127 0.82006 1.22004 0.93529 0.94927 0.92668 1.76113 1.19148 1.21925 0.97212 1.78833 1.00090 1.03353 1.21593 1.47727 1.25803 1.28016 1.03199 0.64414 1.75210 1.16572 1.23109 1.00347 1.84062 1.50443 1.55848 1.16231 0.94342 0.93328 0.94182 0.89870 0.91452 0.91988 0.93516 0.93012 0.93899 0.97703 1.00515 0.92827 0.90099 0.89737 0.80293 0.79973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.55 9.14 71.98 0.66 -3.89 16 2 C -0.10 -3.03 2.70 -10.79 -0.03 -3.06 16 3 C -0.14 -3.43 9.19 71.98 0.66 -2.77 16 4 C 0.07 2.57 4.08 86.30 0.35 2.92 16 5 N -0.54 -22.11 3.82 -905.38 -3.46 -25.56 16 6 C 0.21 10.68 4.67 85.56 0.40 11.08 16 7 C -0.51 -28.45 8.34 25.60 0.21 -28.24 16 8 H 0.06 3.38 7.81 -2.91 -0.02 3.36 16 9 C 0.01 0.32 5.46 84.65 0.46 0.78 16 10 N -0.93 -55.15 13.29 21.45 0.28 -54.86 16 11 Si 0.96 44.37 29.54 68.60 2.03 46.40 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 13 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 14 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 15 C 0.12 4.05 5.43 85.55 0.46 4.51 16 16 C 0.04 1.26 4.89 24.88 0.12 1.38 16 17 C -0.20 -4.74 8.58 22.13 0.19 -4.55 16 18 C -0.12 -2.73 10.68 22.39 0.24 -2.49 16 19 C 0.01 0.37 7.26 24.28 0.18 0.54 16 20 C 0.25 6.67 8.20 137.10 1.12 7.79 16 21 N -0.27 -6.67 12.53 -52.42 -0.66 -7.32 16 22 N -0.04 -0.88 13.46 37.02 0.50 -0.38 16 23 N -0.20 -3.18 7.90 37.02 0.29 -2.89 16 24 H 0.50 2.80 8.96 -347.50 -3.11 -0.31 16 25 N -0.30 -7.38 12.41 -52.37 -0.65 -8.03 16 26 O -0.17 -5.66 10.67 -6.04 -0.06 -5.73 16 27 H 0.04 1.37 8.14 -2.39 -0.02 1.36 16 28 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 29 H 0.04 1.64 7.68 -2.39 -0.02 1.62 16 30 H 0.08 2.54 3.63 -2.39 -0.01 2.53 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.05 2.20 7.06 -2.38 -0.02 2.18 16 35 H 0.04 1.38 7.64 -2.39 -0.02 1.36 16 36 H 0.00 0.27 7.78 -2.39 -0.02 0.25 16 37 H -0.02 -1.25 8.05 -2.39 -0.02 -1.27 16 38 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 39 H 0.08 2.81 7.82 -2.38 -0.02 2.79 16 40 H 0.08 2.46 7.84 -2.39 -0.02 2.44 16 41 H 0.18 3.27 8.06 -2.91 -0.02 3.25 16 42 H 0.18 3.24 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -68.66 352.97 1.24 -67.42 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -2.07 Total: 6.93 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: 5.03 Total: -15.98 kcal Atomic # 7 Polarization: -95.35 SS G_CDS: -3.69 Total: -99.04 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.06 Total: -5.73 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -68.66 1.24 -67.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824255539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.731 kcal (2) G-P(sol) polarization free energy of solvation -68.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds