Wall clock time and date at job start Tue Mar 31 2020 08:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34889 * 120.00081 * 2 1 4 4 C 1.46344 * 119.99831 * 179.97438 * 3 2 1 5 5 O 1.21703 * 120.00195 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99612 * 179.97438 * 4 3 2 7 7 C 1.46499 * 119.99665 * 179.72462 * 6 4 3 8 8 C 1.53004 * 109.47198 * 180.27868 * 7 6 4 9 9 C 1.52998 * 109.46876 * 299.99984 * 8 7 6 10 10 C 1.53005 * 109.46795 * 60.00011 * 8 7 6 11 11 C 1.50700 * 109.47208 * 180.02562 * 8 7 6 12 12 H 1.08002 * 119.99770 * 359.97438 * 11 8 7 13 13 C 1.37876 * 119.99720 * 179.97438 * 11 8 7 14 14 N 1.31514 * 120.00513 * 0.02562 * 13 11 8 15 15 Si 1.86809 * 119.99651 * 179.97438 * 13 11 8 16 16 H 1.48495 * 109.47265 * 0.02562 * 15 13 11 17 17 H 1.48494 * 109.46830 * 120.00397 * 15 13 11 18 18 H 1.48503 * 109.47108 * 240.00004 * 15 13 11 19 19 C 1.47106 * 119.99727 * 179.97438 * 2 1 3 20 20 C 1.39894 * 120.14639 * 114.72736 * 19 2 1 21 21 C 1.37791 * 119.85758 * 179.78487 * 20 19 2 22 22 C 1.38683 * 120.14222 * 0.48966 * 21 20 19 23 23 F 1.35097 * 119.85543 * 179.71643 * 22 21 20 24 24 C 1.38689 * 120.29061 * 359.74306 * 22 21 20 25 25 C 1.37787 * 120.14461 * 0.02562 * 24 22 21 26 26 H 1.09001 * 109.47236 * 89.99865 * 1 2 3 27 27 H 1.08994 * 109.47670 * 210.00294 * 1 2 3 28 28 H 1.09006 * 109.47184 * 330.00314 * 1 2 3 29 29 H 1.08002 * 120.00278 * 359.97438 * 3 2 1 30 30 H 0.97001 * 120.00485 * 0.02562 * 6 4 3 31 31 H 1.09009 * 109.47454 * 300.27637 * 7 6 4 32 32 H 1.08998 * 109.47492 * 60.27932 * 7 6 4 33 33 H 1.08996 * 109.47009 * 60.00253 * 9 8 7 34 34 H 1.09004 * 109.46783 * 179.97438 * 9 8 7 35 35 H 1.08998 * 109.47156 * 300.00070 * 9 8 7 36 36 H 1.09000 * 109.47011 * 60.00556 * 10 8 7 37 37 H 1.09004 * 109.46658 * 180.02562 * 10 8 7 38 38 H 1.08996 * 109.47069 * 299.99740 * 10 8 7 39 39 H 0.96999 * 120.00239 * 180.02562 * 14 13 11 40 40 H 1.08010 * 120.07285 * 0.02562 * 20 19 2 41 41 H 1.08000 * 119.92653 * 180.22590 * 21 20 19 42 42 H 1.08000 * 119.92895 * 180.02562 * 24 22 21 43 43 H 1.08004 * 120.07368 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1814 1.1682 0.0000 4 6 3.6448 1.1681 0.0006 5 8 4.2533 0.1141 0.0015 6 7 4.3187 2.3353 0.0000 7 6 5.7837 2.3353 0.0067 8 6 6.2937 3.7778 0.0116 9 6 5.7894 4.5012 -1.2386 10 6 5.7780 4.4968 1.2599 11 6 7.8007 3.7778 0.0178 12 1 8.3407 2.8424 0.0187 13 6 8.4901 4.9718 0.0225 14 7 7.8325 6.1108 0.0220 15 14 10.3581 4.9718 0.0309 16 1 10.8531 3.5717 0.0307 17 1 10.8585 5.6734 -1.1784 18 1 10.8477 5.6702 1.2465 19 6 2.2424 -1.2740 0.0006 20 6 3.0319 -1.6300 -1.0981 21 6 3.7218 -2.8227 -1.0894 22 6 3.6267 -3.6742 0.0011 23 9 4.3011 -4.8449 0.0011 24 6 2.8419 -3.3296 1.0914 25 6 2.1507 -2.1377 1.0973 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3634 0.8901 0.5138 29 1 1.6414 2.1035 -0.0004 30 1 3.8337 3.1754 -0.0003 31 1 6.1430 1.8199 0.8975 32 1 6.1511 1.8231 -0.8825 33 1 4.6995 4.5013 -1.2436 34 1 6.1524 5.5291 -1.2349 35 1 6.1568 3.9890 -2.1279 36 1 6.1374 3.9813 2.1505 37 1 6.1410 5.5246 1.2631 38 1 4.6881 4.4968 1.2549 39 1 8.3176 6.9508 0.0248 40 1 3.1036 -0.9695 -1.9497 41 1 4.3345 -3.0969 -1.9354 42 1 2.7724 -3.9970 1.9377 43 1 1.5396 -1.8706 1.9469 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837888498.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:04 Heat of formation + Delta-G solvation = -48.244356 kcal Electronic energy + Delta-G solvation = -24662.186486 eV Core-core repulsion = 21007.940569 eV Total energy + Delta-G solvation = -3654.245917 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.81170 -39.84688 -38.47287 -36.40144 -34.79454 -33.24703 -31.09698 -30.94227 -29.45128 -28.23472 -25.73671 -25.56870 -24.82466 -23.02978 -22.85665 -20.86243 -19.15662 -18.62540 -17.66651 -17.16735 -16.20153 -15.86270 -15.50722 -15.42112 -14.81605 -14.65495 -14.41604 -13.95660 -13.80174 -13.63615 -13.48379 -13.15700 -12.94908 -12.88421 -12.70205 -12.44654 -12.18626 -11.94768 -11.45572 -11.38890 -11.20295 -11.01854 -10.88521 -10.66572 -10.39893 -10.21030 -9.71031 -9.64470 -9.34002 -9.22758 -8.93918 -8.78833 -8.43332 -8.25376 -8.08467 -6.02965 -4.12846 0.90243 1.38472 1.56966 3.26655 3.35333 3.40127 3.65123 3.67156 3.83739 4.34464 4.40030 4.49396 4.78797 4.87445 4.97850 5.21976 5.23976 5.27555 5.32634 5.37386 5.52134 5.65382 5.85725 5.94596 6.15046 6.16772 6.20767 6.33141 6.33396 6.39269 6.50389 6.54768 6.78606 6.81494 6.93713 6.97255 7.01152 7.05554 7.35182 7.54766 7.68924 8.00067 8.07979 8.17263 8.38180 8.75039 8.88480 9.53147 10.98467 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.017856 B = 0.003333 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.724429 B = 8398.052575 C = 9528.870852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.016 4.016 3 C -0.198 4.198 4 C 0.527 3.473 5 O -0.541 6.541 6 N -0.711 5.711 7 C 0.134 3.866 8 C 0.055 3.945 9 C -0.130 4.130 10 C -0.130 4.130 11 C -0.505 4.505 12 H 0.057 0.943 13 C 0.066 3.934 14 N -0.886 5.886 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.050 4.050 20 C -0.019 4.019 21 C -0.156 4.156 22 C 0.096 3.904 23 F -0.146 7.146 24 C -0.161 4.161 25 C -0.080 4.080 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.130 0.870 30 H 0.397 0.603 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.006 0.994 34 H 0.085 0.915 35 H 0.026 0.974 36 H 0.026 0.974 37 H 0.085 0.915 38 H 0.006 0.994 39 H 0.259 0.741 40 H 0.124 0.876 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.186 -11.398 -0.411 19.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.018 4.018 3 C -0.218 4.218 4 C 0.314 3.686 5 O -0.422 6.422 6 N -0.360 5.360 7 C 0.011 3.989 8 C 0.054 3.946 9 C -0.188 4.188 10 C -0.188 4.188 11 C -0.543 4.543 12 H 0.076 0.924 13 C -0.135 4.135 14 N -0.525 5.525 15 Si 0.720 3.280 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.050 4.050 20 C -0.037 4.037 21 C -0.175 4.175 22 C 0.077 3.923 23 F -0.125 7.125 24 C -0.180 4.180 25 C -0.099 4.099 26 H 0.097 0.903 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.148 0.852 30 H 0.232 0.768 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.025 0.975 34 H 0.104 0.896 35 H 0.045 0.955 36 H 0.045 0.955 37 H 0.104 0.896 38 H 0.025 0.975 39 H 0.069 0.931 40 H 0.142 0.858 41 H 0.148 0.852 42 H 0.148 0.852 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.639 -11.963 -0.410 19.695 hybrid contribution 1.103 0.472 0.078 1.202 sum -14.536 -11.492 -0.331 18.533 Atomic orbital electron populations 1.20927 0.90282 1.03301 1.02996 1.20980 0.95270 0.91744 0.93807 1.23019 0.94262 0.98125 1.06433 1.18380 0.87897 0.84443 0.77832 1.90853 1.70287 1.30412 1.50625 1.46273 1.09205 1.07742 1.72798 1.21682 0.76368 1.00457 1.00391 1.18366 0.95432 0.87967 0.92812 1.21822 0.95165 1.04235 0.97548 1.21824 0.95158 1.04226 0.97588 1.21027 0.90002 0.92655 1.50641 0.92432 1.24878 0.98306 0.95525 0.94803 1.69811 1.34758 0.97176 1.50742 0.86528 0.85745 0.78165 0.77534 1.19760 1.21056 1.21050 1.18699 0.97989 0.93377 0.94965 1.20829 0.91915 0.93657 0.97280 1.20912 1.02667 0.95387 0.98501 1.17804 0.95356 0.82873 0.96261 1.91465 1.78475 1.45667 1.96868 1.20856 1.00063 0.98905 0.98154 1.20880 0.98916 0.92643 0.97420 0.90279 0.90990 0.90814 0.85213 0.76800 0.92807 0.92788 0.97514 0.89620 0.95495 0.95492 0.89620 0.97511 0.93077 0.85810 0.85157 0.85202 0.85500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 10.03 36.00 0.36 -0.50 16 2 C -0.02 -0.18 5.48 -102.22 -0.56 -0.74 16 3 C -0.20 -2.44 9.68 -37.51 -0.36 -2.80 16 4 C 0.53 8.78 7.62 -13.00 -0.10 8.68 16 5 O -0.54 -10.53 12.22 5.19 0.06 -10.47 16 6 N -0.71 -12.40 4.95 -61.72 -0.31 -12.70 16 7 C 0.13 2.82 4.50 -4.04 -0.02 2.80 16 8 C 0.05 1.27 0.50 -155.66 -0.08 1.19 16 9 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 10 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 11 C -0.50 -13.23 8.01 -34.44 -0.28 -13.50 16 12 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 13 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 14 N -0.89 -23.55 9.35 55.43 0.52 -23.03 16 15 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 16 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 C -0.05 -0.64 3.82 -105.06 -0.40 -1.05 16 20 C -0.02 -0.26 6.98 -39.13 -0.27 -0.53 16 21 C -0.16 -2.14 10.01 -39.58 -0.40 -2.53 16 22 C 0.10 1.33 7.31 -39.25 -0.29 1.04 16 23 F -0.15 -2.06 17.26 2.25 0.04 -2.02 16 24 C -0.16 -1.99 10.01 -39.58 -0.40 -2.39 16 25 C -0.08 -0.96 9.69 -39.12 -0.38 -1.34 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.46 8.02 -51.93 -0.42 0.05 16 28 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 29 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 30 H 0.40 6.25 6.14 -40.82 -0.25 6.00 16 31 H 0.05 1.21 8.14 -51.92 -0.42 0.79 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 34 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 38 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 39 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 40 H 0.12 1.65 8.06 -52.48 -0.42 1.22 16 41 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 43 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 LS Contribution 354.73 15.07 5.35 5.35 Total: -1.00 -29.01 354.73 -8.22 -37.23 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -6.20 Total: 5.15 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -2.66 Total: -15.24 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.21 Total: -35.73 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.06 Total: -10.47 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.01 -8.22 -37.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837888498.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.016 kcal (2) G-P(sol) polarization free energy of solvation -29.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds