Wall clock time and date at job start Tue Mar 31 2020 08:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34813 * 119.99818 * 2 1 4 4 C 1.46427 * 119.99945 * 5.61509 * 3 2 1 5 5 O 1.21695 * 120.00125 * 354.73765 * 4 3 2 6 6 N 1.34777 * 119.99914 * 174.74559 * 4 3 2 7 7 C 1.46494 * 120.00304 * 179.72125 * 6 4 3 8 8 C 1.53000 * 109.47575 * 180.27272 * 7 6 4 9 9 C 1.53000 * 109.47000 * 300.00544 * 8 7 6 10 10 C 1.52999 * 109.46933 * 60.00130 * 8 7 6 11 11 C 1.50697 * 109.47092 * 179.97438 * 8 7 6 12 12 H 1.07994 * 120.00271 * 0.02562 * 11 8 7 13 13 C 1.37884 * 119.99527 * 179.97438 * 11 8 7 14 14 N 1.31507 * 120.00389 * 0.02562 * 13 11 8 15 15 Si 1.86801 * 119.99780 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.47118 * 90.00160 * 15 13 11 17 17 H 1.48496 * 109.47278 * 210.00154 * 15 13 11 18 18 H 1.48502 * 109.47150 * 330.00318 * 15 13 11 19 19 C 1.47214 * 120.00133 * 180.02562 * 2 1 3 20 20 C 1.39860 * 120.15245 * 114.72462 * 19 2 1 21 21 C 1.37880 * 119.86867 * 179.72087 * 20 19 2 22 22 C 1.38381 * 120.20304 * 0.55515 * 21 20 19 23 23 C 1.38593 * 120.32008 * 359.72165 * 22 21 20 24 24 F 1.35097 * 119.94473 * 180.02562 * 23 22 21 25 25 C 1.38141 * 120.11936 * 359.97438 * 23 22 21 26 26 H 1.08999 * 109.47248 * 58.16822 * 1 2 3 27 27 H 1.09001 * 109.47106 * 178.16731 * 1 2 3 28 28 H 1.09001 * 109.46833 * 298.16590 * 1 2 3 29 29 H 1.07998 * 119.99528 * 185.61428 * 3 2 1 30 30 H 0.97002 * 120.00003 * 359.97438 * 6 4 3 31 31 H 1.09001 * 109.47022 * 300.27765 * 7 6 4 32 32 H 1.09004 * 109.47150 * 60.27109 * 7 6 4 33 33 H 1.08997 * 109.47723 * 59.99660 * 9 8 7 34 34 H 1.09004 * 109.47171 * 180.02562 * 9 8 7 35 35 H 1.09004 * 109.46591 * 299.99469 * 9 8 7 36 36 H 1.08995 * 109.47396 * 59.99975 * 10 8 7 37 37 H 1.08997 * 109.47422 * 180.02562 * 10 8 7 38 38 H 1.09005 * 109.47369 * 300.00364 * 10 8 7 39 39 H 0.97001 * 120.00347 * 180.02562 * 14 13 11 40 40 H 1.07997 * 120.06519 * 359.97438 * 20 19 2 41 41 H 1.08003 * 119.89678 * 180.24854 * 21 20 19 42 42 H 1.08000 * 119.84370 * 179.73587 * 22 21 20 43 43 H 1.07999 * 120.10701 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1811 1.1675 0.0000 4 6 1.4541 2.4326 0.1241 5 8 0.2372 2.4370 0.1308 6 7 2.1328 3.5921 0.2307 7 6 1.4056 4.8583 0.3487 8 6 2.4046 6.0130 0.4476 9 6 3.2904 5.8168 1.6796 10 6 3.2773 6.0413 -0.8087 11 6 1.6564 7.3155 0.5684 12 1 0.5765 7.3194 0.5744 13 6 2.3508 8.5022 0.6722 14 7 3.6658 8.4974 0.6653 15 14 1.4235 10.1168 0.8226 16 1 1.1846 10.4187 2.2568 17 1 2.2268 11.2076 0.2143 18 1 0.1218 10.0077 0.1162 19 6 2.2431 -1.2749 -0.0006 20 6 3.0325 -1.6299 -1.0992 21 6 3.7240 -2.8227 -1.0911 22 6 3.6302 -3.6744 -0.0045 23 6 2.8458 -3.3334 1.0861 24 9 2.7601 -4.1703 2.1431 25 6 2.1523 -2.1387 1.0947 26 1 -0.3634 0.5420 -0.8731 27 1 -0.3633 -1.0271 -0.0329 28 1 -0.3633 0.4851 0.9060 29 1 3.2572 1.1697 -0.0915 30 1 3.1028 3.5886 0.2256 31 1 0.7745 4.9980 -0.5290 32 1 0.7838 4.8382 1.2437 33 1 3.8315 4.8747 1.5918 34 1 4.0018 6.6396 1.7503 35 1 2.6686 5.7966 2.5746 36 1 2.6463 6.1810 -1.6864 37 1 3.9893 6.8635 -0.7381 38 1 3.8184 5.0991 -0.8966 39 1 4.1543 9.3323 0.7388 40 1 3.1034 -0.9691 -1.9505 41 1 4.3368 -3.0954 -1.9376 42 1 4.1710 -4.6092 -0.0061 43 1 1.5415 -1.8730 1.9448 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837889228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:09 Heat of formation + Delta-G solvation = -54.094029 kcal Electronic energy + Delta-G solvation = -23978.457126 eV Core-core repulsion = 20323.957548 eV Total energy + Delta-G solvation = -3654.499578 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.18591 -39.79655 -39.02647 -36.54212 -34.80150 -33.27454 -31.11834 -30.89921 -30.16387 -27.89525 -25.73345 -25.61135 -24.96656 -23.71809 -22.88616 -20.94708 -19.32243 -18.70504 -17.29511 -16.88344 -16.49497 -16.45133 -15.88580 -15.74700 -15.16502 -14.79376 -14.59252 -14.45244 -14.12765 -13.64188 -13.37686 -13.15544 -12.94689 -12.80625 -12.42485 -12.31709 -12.15591 -12.11969 -11.72185 -11.42655 -11.37825 -11.19877 -10.86963 -10.69934 -10.39222 -10.20646 -9.64172 -9.62825 -9.45337 -9.20891 -9.18476 -8.87675 -8.79154 -8.43121 -8.25480 -6.02914 -4.13005 0.60818 0.84933 1.40268 3.19668 3.27697 3.34765 3.38457 3.56737 3.73790 3.96270 4.34776 4.42053 4.48905 4.67457 4.76987 4.94629 5.00064 5.23893 5.27673 5.42576 5.57531 5.67938 5.71422 5.84241 5.90678 5.96492 6.08590 6.21900 6.32462 6.34402 6.43740 6.50965 6.55063 6.77943 6.82009 6.93908 7.01245 7.04214 7.35057 7.54959 7.68714 8.00258 8.06686 8.15994 8.37876 8.70735 8.87960 9.52879 10.98514 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.030440 B = 0.002439 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.626560 B =11475.099313 C =11684.649011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.016 4.016 3 C -0.194 4.194 4 C 0.533 3.467 5 O -0.550 6.550 6 N -0.711 5.711 7 C 0.132 3.868 8 C 0.056 3.944 9 C -0.131 4.131 10 C -0.131 4.131 11 C -0.506 4.506 12 H 0.057 0.943 13 C 0.066 3.934 14 N -0.886 5.886 15 Si 0.893 3.107 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.023 4.023 20 C -0.115 4.115 21 C -0.089 4.089 22 C -0.155 4.155 23 C 0.100 3.900 24 F -0.140 7.140 25 C -0.138 4.138 26 H 0.086 0.914 27 H 0.050 0.950 28 H 0.087 0.913 29 H 0.126 0.874 30 H 0.398 0.602 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.006 0.994 34 H 0.085 0.915 35 H 0.026 0.974 36 H 0.026 0.974 37 H 0.085 0.915 38 H 0.006 0.994 39 H 0.260 0.740 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.932 -21.775 -2.697 22.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.018 4.018 3 C -0.215 4.215 4 C 0.321 3.679 5 O -0.432 6.432 6 N -0.361 5.361 7 C 0.010 3.990 8 C 0.055 3.945 9 C -0.189 4.189 10 C -0.189 4.189 11 C -0.545 4.545 12 H 0.076 0.924 13 C -0.135 4.135 14 N -0.525 5.525 15 Si 0.721 3.279 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.023 4.023 20 C -0.133 4.133 21 C -0.107 4.107 22 C -0.174 4.174 23 C 0.081 3.919 24 F -0.118 7.118 25 C -0.157 4.157 26 H 0.105 0.895 27 H 0.069 0.931 28 H 0.105 0.895 29 H 0.144 0.856 30 H 0.233 0.767 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.025 0.975 34 H 0.104 0.896 35 H 0.045 0.955 36 H 0.046 0.954 37 H 0.104 0.896 38 H 0.025 0.975 39 H 0.070 0.930 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.224 -21.616 -2.635 21.810 hybrid contribution 0.186 0.764 0.319 0.848 sum 1.410 -20.852 -2.316 21.028 Atomic orbital electron populations 1.20961 0.89481 1.00927 1.04858 1.20977 0.96409 0.90497 0.93904 1.22911 1.00220 0.92184 1.06150 1.18237 0.87494 0.84301 0.77862 1.90771 1.13565 1.87538 1.51279 1.46228 1.10606 1.06896 1.72328 1.21711 0.95457 0.81540 1.00309 1.18352 0.91871 0.91453 0.92808 1.21836 1.00322 0.98991 0.97751 1.21833 1.00319 0.99282 0.97445 1.20989 0.92878 0.90249 1.50335 0.92440 1.24881 0.94868 0.98941 0.94830 1.69799 1.05659 1.26619 1.50402 0.86575 0.79875 0.83217 0.78229 1.20712 1.21265 1.19903 1.18789 0.96227 0.93578 0.93690 1.21461 0.96505 0.97237 0.98127 1.20962 0.98463 0.93502 0.97736 1.21245 1.00821 1.01754 0.93562 1.17558 0.99734 0.89320 0.85331 1.91512 1.95010 1.70333 1.54959 1.21242 1.01488 0.93012 0.99960 0.89533 0.93135 0.89496 0.85593 0.76670 0.92681 0.92717 0.97477 0.89594 0.95457 0.95433 0.89600 0.97493 0.93003 0.84782 0.84658 0.84719 0.84314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 8.33 36.01 0.30 -1.00 16 2 C -0.02 -0.19 5.48 -102.19 -0.56 -0.75 16 3 C -0.19 -2.51 9.64 -37.50 -0.36 -2.87 16 4 C 0.53 8.98 7.71 -12.96 -0.10 8.88 16 5 O -0.55 -10.73 13.15 5.19 0.07 -10.66 16 6 N -0.71 -12.49 4.95 -61.70 -0.31 -12.80 16 7 C 0.13 2.78 4.50 -4.04 -0.02 2.76 16 8 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 9 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 10 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 11 C -0.51 -13.19 8.01 -34.44 -0.28 -13.46 16 12 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 13 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 14 N -0.89 -23.53 9.35 55.43 0.52 -23.01 16 15 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 C -0.02 -0.23 5.23 -105.07 -0.55 -0.78 16 20 C -0.12 -0.98 9.73 -39.11 -0.38 -1.36 16 21 C -0.09 -0.64 10.03 -39.66 -0.40 -1.04 16 22 C -0.16 -1.23 10.02 -39.40 -0.39 -1.62 16 23 C 0.10 0.97 7.29 -39.49 -0.29 0.68 16 24 F -0.14 -1.46 17.26 2.25 0.04 -1.42 16 25 C -0.14 -1.38 9.76 -39.04 -0.38 -1.76 16 26 H 0.09 1.17 7.33 -51.93 -0.38 0.79 16 27 H 0.05 0.51 7.99 -51.93 -0.41 0.10 16 28 H 0.09 1.19 7.17 -51.93 -0.37 0.82 16 29 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.40 6.35 6.14 -40.82 -0.25 6.10 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 34 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 38 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 39 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 40 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.14 0.62 8.06 -52.48 -0.42 0.20 16 42 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 356.52 15.07 5.37 5.37 Total: -1.00 -28.19 356.52 -8.41 -36.60 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -6.11 Total: 5.05 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -2.98 Total: -14.76 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 0.21 Total: -35.81 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.07 Total: -10.66 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.19 -8.41 -36.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837889228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.495 kcal (2) G-P(sol) polarization free energy of solvation -28.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds