Wall clock time and date at job start Tue Mar 31 2020 08:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34813 * 119.99818 * 2 1 4 4 C 1.46427 * 119.99945 * 5.61509 * 3 2 1 5 5 O 1.21695 * 120.00125 * 354.73765 * 4 3 2 6 6 N 1.34777 * 119.99914 * 174.74559 * 4 3 2 7 7 C 1.46494 * 120.00304 * 179.72125 * 6 4 3 8 8 C 1.53000 * 109.47575 * 180.27272 * 7 6 4 9 9 C 1.53000 * 109.47000 * 300.00544 * 8 7 6 10 10 C 1.52999 * 109.46933 * 60.00130 * 8 7 6 11 11 C 1.50697 * 109.47092 * 179.97438 * 8 7 6 12 12 H 1.07994 * 120.00271 * 0.02562 * 11 8 7 13 13 C 1.37884 * 119.99527 * 179.97438 * 11 8 7 14 14 N 1.31507 * 120.00389 * 0.02562 * 13 11 8 15 15 Si 1.86801 * 119.99780 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.47118 * 90.00160 * 15 13 11 17 17 H 1.48496 * 109.47278 * 210.00154 * 15 13 11 18 18 H 1.48502 * 109.47150 * 330.00318 * 15 13 11 19 19 C 1.47214 * 120.00133 * 180.02562 * 2 1 3 20 20 C 1.39860 * 120.15245 * 114.72462 * 19 2 1 21 21 C 1.37880 * 119.86867 * 179.72087 * 20 19 2 22 22 C 1.38381 * 120.20304 * 0.55515 * 21 20 19 23 23 C 1.38593 * 120.32008 * 359.72165 * 22 21 20 24 24 F 1.35097 * 119.94473 * 180.02562 * 23 22 21 25 25 C 1.38141 * 120.11936 * 359.97438 * 23 22 21 26 26 H 1.08999 * 109.47248 * 58.16822 * 1 2 3 27 27 H 1.09001 * 109.47106 * 178.16731 * 1 2 3 28 28 H 1.09001 * 109.46833 * 298.16590 * 1 2 3 29 29 H 1.07998 * 119.99528 * 185.61428 * 3 2 1 30 30 H 0.97002 * 120.00003 * 359.97438 * 6 4 3 31 31 H 1.09001 * 109.47022 * 300.27765 * 7 6 4 32 32 H 1.09004 * 109.47150 * 60.27109 * 7 6 4 33 33 H 1.08997 * 109.47723 * 59.99660 * 9 8 7 34 34 H 1.09004 * 109.47171 * 180.02562 * 9 8 7 35 35 H 1.09004 * 109.46591 * 299.99469 * 9 8 7 36 36 H 1.08995 * 109.47396 * 59.99975 * 10 8 7 37 37 H 1.08997 * 109.47422 * 180.02562 * 10 8 7 38 38 H 1.09005 * 109.47369 * 300.00364 * 10 8 7 39 39 H 0.97001 * 120.00347 * 180.02562 * 14 13 11 40 40 H 1.07997 * 120.06519 * 359.97438 * 20 19 2 41 41 H 1.08003 * 119.89678 * 180.24854 * 21 20 19 42 42 H 1.08000 * 119.84370 * 179.73587 * 22 21 20 43 43 H 1.07999 * 120.10701 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1811 1.1675 0.0000 4 6 1.4541 2.4326 0.1241 5 8 0.2372 2.4370 0.1308 6 7 2.1328 3.5921 0.2307 7 6 1.4056 4.8583 0.3487 8 6 2.4046 6.0130 0.4476 9 6 3.2904 5.8168 1.6796 10 6 3.2773 6.0413 -0.8087 11 6 1.6564 7.3155 0.5684 12 1 0.5765 7.3194 0.5744 13 6 2.3508 8.5022 0.6722 14 7 3.6658 8.4974 0.6653 15 14 1.4235 10.1168 0.8226 16 1 1.1846 10.4187 2.2568 17 1 2.2268 11.2076 0.2143 18 1 0.1218 10.0077 0.1162 19 6 2.2431 -1.2749 -0.0006 20 6 3.0325 -1.6299 -1.0992 21 6 3.7240 -2.8227 -1.0911 22 6 3.6302 -3.6744 -0.0045 23 6 2.8458 -3.3334 1.0861 24 9 2.7601 -4.1703 2.1431 25 6 2.1523 -2.1387 1.0947 26 1 -0.3634 0.5420 -0.8731 27 1 -0.3633 -1.0271 -0.0329 28 1 -0.3633 0.4851 0.9060 29 1 3.2572 1.1697 -0.0915 30 1 3.1028 3.5886 0.2256 31 1 0.7745 4.9980 -0.5290 32 1 0.7838 4.8382 1.2437 33 1 3.8315 4.8747 1.5918 34 1 4.0018 6.6396 1.7503 35 1 2.6686 5.7966 2.5746 36 1 2.6463 6.1810 -1.6864 37 1 3.9893 6.8635 -0.7381 38 1 3.8184 5.0991 -0.8966 39 1 4.1543 9.3323 0.7388 40 1 3.1034 -0.9691 -1.9505 41 1 4.3368 -3.0954 -1.9376 42 1 4.1710 -4.6092 -0.0061 43 1 1.5415 -1.8730 1.9448 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837889228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:08 Heat of formation + Delta-G solvation = -67.556963 kcal Electronic energy + Delta-G solvation = -23979.040922 eV Core-core repulsion = 20323.957548 eV Total energy + Delta-G solvation = -3655.083374 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.92152 -40.95713 -39.96391 -38.21003 -35.81952 -34.93566 -32.78156 -31.72264 -30.93681 -29.05636 -27.55830 -27.41089 -26.58432 -24.67019 -23.54174 -22.15258 -20.68120 -20.21731 -18.24564 -18.11991 -17.59705 -17.20164 -17.13232 -16.67534 -16.61435 -16.22767 -16.20194 -15.53136 -14.87446 -14.73477 -14.70310 -14.67463 -14.26256 -13.96638 -13.89445 -13.60620 -13.16455 -13.09054 -13.04201 -12.79484 -12.66960 -12.64283 -12.58861 -12.24298 -12.14715 -12.11146 -11.47613 -11.22937 -10.74324 -10.61239 -10.50953 -10.39085 -9.96749 -9.79958 -9.55952 -8.02252 -6.17966 -0.16032 0.19292 0.45738 1.42308 1.45266 1.53366 2.29157 2.36919 2.49980 2.60792 3.20292 3.21353 3.54612 3.84617 3.95582 4.06339 4.15889 4.20495 4.36588 4.45285 4.53038 4.58074 4.72413 4.77077 4.82064 4.99408 5.02431 5.03928 5.06611 5.10566 5.13420 5.20348 5.26056 5.32529 5.39681 5.41628 5.51750 5.63620 5.67451 5.67753 5.87913 6.15637 6.22375 6.43912 6.73896 6.86575 7.36338 7.49802 8.96669 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.030440 B = 0.002439 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.626560 B =11475.099313 C =11684.649011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.007 3.993 3 C -0.205 4.205 4 C 0.531 3.469 5 O -0.583 6.583 6 N -0.708 5.708 7 C 0.150 3.850 8 C 0.051 3.949 9 C -0.121 4.121 10 C -0.121 4.121 11 C -0.529 4.529 12 H 0.044 0.956 13 C 0.028 3.972 14 N -0.899 5.899 15 Si 0.944 3.056 16 H -0.279 1.279 17 H -0.282 1.282 18 H -0.276 1.276 19 C -0.039 4.039 20 C -0.112 4.112 21 C -0.082 4.082 22 C -0.148 4.148 23 C 0.081 3.919 24 F -0.149 7.149 25 C -0.147 4.147 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.153 0.847 30 H 0.408 0.592 31 H 0.039 0.961 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.062 0.938 35 H 0.016 0.984 36 H 0.018 0.982 37 H 0.062 0.938 38 H 0.038 0.962 39 H 0.260 0.740 40 H 0.148 0.852 41 H 0.168 0.832 42 H 0.157 0.843 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.304 -23.722 -3.610 24.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.005 3.995 3 C -0.226 4.226 4 C 0.321 3.679 5 O -0.466 6.466 6 N -0.358 5.358 7 C 0.026 3.974 8 C 0.051 3.949 9 C -0.179 4.179 10 C -0.179 4.179 11 C -0.567 4.567 12 H 0.062 0.938 13 C -0.172 4.172 14 N -0.538 5.538 15 Si 0.771 3.229 16 H -0.205 1.205 17 H -0.208 1.208 18 H -0.201 1.201 19 C -0.039 4.039 20 C -0.130 4.130 21 C -0.099 4.099 22 C -0.167 4.167 23 C 0.062 3.938 24 F -0.128 7.128 25 C -0.165 4.165 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.171 0.829 30 H 0.245 0.755 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.036 0.964 36 H 0.037 0.963 37 H 0.081 0.919 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.166 0.834 41 H 0.186 0.814 42 H 0.174 0.826 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.615 -23.577 -3.548 23.985 hybrid contribution -0.271 1.256 0.585 1.411 sum 2.345 -22.321 -2.963 22.639 Atomic orbital electron populations 1.20907 0.90289 1.01734 1.03273 1.21074 0.96037 0.91201 0.91237 1.22784 1.01209 0.90244 1.08320 1.18838 0.87263 0.85138 0.76626 1.90763 1.15208 1.88041 1.52621 1.46037 1.10918 1.05995 1.72882 1.21235 0.94781 0.82696 0.98719 1.18346 0.92192 0.90964 0.93413 1.21681 0.99631 0.99616 0.97001 1.21674 0.99619 0.99987 0.96620 1.21287 0.92619 0.92119 1.50723 0.93760 1.25451 0.95621 1.01335 0.94764 1.69903 1.06310 1.27089 1.50520 0.85771 0.78777 0.80276 0.78053 1.20545 1.20783 1.20067 1.18669 0.97541 0.92925 0.94788 1.21694 0.95630 0.97952 0.97771 1.21323 0.97866 0.92457 0.98269 1.21579 0.99721 1.02574 0.92802 1.17763 1.00770 0.89348 0.85901 1.91488 1.95182 1.70541 1.55547 1.21253 1.01847 0.93391 1.00051 0.90913 0.91090 0.91299 0.82902 0.75476 0.94295 0.94486 0.94431 0.91889 0.96430 0.96252 0.91922 0.94347 0.93026 0.83374 0.81418 0.82572 0.84650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.56 8.33 71.24 0.59 -1.96 16 2 C 0.01 0.15 5.48 -18.29 -0.10 0.05 16 3 C -0.21 -4.96 9.64 23.62 0.23 -4.73 16 4 C 0.53 17.60 7.71 86.38 0.67 18.26 16 5 O -0.58 -23.09 13.15 -4.33 -0.06 -23.15 16 6 N -0.71 -24.28 4.95 -467.35 -2.32 -26.59 16 7 C 0.15 6.35 4.50 86.38 0.39 6.74 16 8 C 0.05 2.37 0.50 -52.93 -0.03 2.35 16 9 C -0.12 -5.41 8.08 71.98 0.58 -4.83 16 10 C -0.12 -5.35 8.08 71.98 0.58 -4.77 16 11 C -0.53 -28.02 8.01 25.60 0.21 -27.82 16 12 H 0.04 2.40 7.74 -2.91 -0.02 2.37 16 13 C 0.03 1.48 5.15 84.66 0.44 1.91 16 14 N -0.90 -47.97 9.35 21.45 0.20 -47.77 16 15 Si 0.94 42.63 29.54 68.60 2.03 44.66 16 16 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 17 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 19 C -0.04 -0.70 5.23 -20.15 -0.11 -0.81 16 20 C -0.11 -1.53 9.73 22.58 0.22 -1.31 16 21 C -0.08 -0.84 10.03 22.22 0.22 -0.62 16 22 C -0.15 -1.86 10.02 22.39 0.22 -1.64 16 23 C 0.08 1.42 7.29 22.33 0.16 1.58 16 24 F -0.15 -2.95 17.26 44.97 0.78 -2.18 16 25 C -0.15 -2.72 9.76 22.62 0.22 -2.50 16 26 H 0.07 1.98 7.33 -2.39 -0.02 1.96 16 27 H 0.07 1.38 7.99 -2.39 -0.02 1.36 16 28 H 0.07 1.94 7.17 -2.39 -0.02 1.92 16 29 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 30 H 0.41 12.19 6.14 -92.71 -0.57 11.62 16 31 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 33 H 0.04 1.39 6.86 -2.39 -0.02 1.38 16 34 H 0.06 3.12 6.07 -2.39 -0.01 3.10 16 35 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.06 3.08 6.07 -2.39 -0.01 3.07 16 38 H 0.04 1.40 6.86 -2.38 -0.02 1.39 16 39 H 0.26 13.36 8.31 -92.71 -0.77 12.59 16 40 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 41 H 0.17 0.67 8.06 -2.91 -0.02 0.64 16 42 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 43 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -61.48 356.52 5.58 -55.91 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.45 Total: 19.20 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: 4.50 Total: -20.08 kcal Atomic # 7 Polarization: -72.25 SS G_CDS: -2.11 Total: -74.36 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.06 Total: -23.15 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.78 Total: -2.18 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -61.48 5.58 -55.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837889228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.651 kcal (2) G-P(sol) polarization free energy of solvation -61.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds