Wall clock time and date at job start Tue Mar 31 2020 08:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50700 * 109.47092 * 239.99574 * 2 1 3 5 5 H 1.08002 * 119.99770 * 239.99893 * 4 2 1 6 6 C 1.37876 * 119.99720 * 60.00211 * 4 2 1 7 7 N 1.31514 * 120.00513 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99651 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47037 * 59.99882 * 8 6 4 10 10 H 1.48501 * 109.46667 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47133 * 299.99829 * 8 6 4 12 12 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 13 13 N 1.46499 * 109.47198 * 299.99984 * 12 2 1 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 2 15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 12 16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 12 17 17 F 1.39902 * 109.47301 * 324.99488 * 16 14 13 18 18 F 1.39897 * 109.47311 * 84.99824 * 16 14 13 19 19 C 1.53005 * 109.47086 * 204.99721 * 16 14 13 20 20 O 1.42900 * 110.01544 * 59.29602 * 19 16 14 21 21 C 1.54270 * 110.03262 * 297.90924 * 19 16 14 22 22 C 1.54954 * 104.15929 * 217.13584 * 21 19 16 23 23 C 1.54891 * 102.78040 * 37.88617 * 22 21 19 24 24 C 1.53871 * 110.03787 * 180.68918 * 19 16 14 25 25 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 26 26 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 27 27 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 30 30 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 31 31 H 0.96999 * 120.00239 * 180.02562 * 7 6 4 32 32 H 1.09009 * 109.46730 * 179.97438 * 12 2 1 33 33 H 1.08998 * 109.46846 * 60.00315 * 12 2 1 34 34 H 0.97001 * 119.99790 * 359.97438 * 13 12 2 35 35 H 0.96704 * 114.00017 * 300.70393 * 20 19 16 36 36 H 1.09005 * 110.48347 * 335.78282 * 21 19 16 37 37 H 1.09003 * 110.48752 * 98.42002 * 21 19 16 38 38 H 1.09001 * 110.71947 * 279.56858 * 22 21 19 39 39 H 1.09008 * 110.76796 * 156.21768 * 22 21 19 40 40 H 1.09002 * 110.48589 * 203.40816 * 23 22 21 41 41 H 1.08994 * 110.48702 * 80.76264 * 23 22 21 42 42 H 1.08997 * 110.03583 * 238.57274 * 24 19 16 43 43 H 1.09004 * 110.02925 * 359.97438 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3225 -1.1198 -4.0079 9 1 1.8281 -2.5200 -4.0080 10 1 1.8279 -0.4195 -5.2204 11 1 3.8075 -1.1192 -4.0077 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8818 -0.4877 3.6695 15 8 2.5790 -1.4738 3.7808 16 6 1.3845 0.2264 4.8999 17 9 1.3371 1.6027 4.6532 18 9 0.1031 -0.2343 5.2206 19 6 2.3330 -0.0499 6.0683 20 8 3.6500 0.4017 5.7465 21 6 2.3549 -1.5594 6.3856 22 6 2.4588 -1.6205 7.9305 23 6 1.5590 -0.4431 8.3813 24 6 1.8277 0.6597 7.3367 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 0.7090 1.1613 -3.4845 32 1 3.1300 -0.7216 1.2491 33 1 1.6766 -1.7488 1.2493 34 1 0.9942 0.7584 2.3564 35 1 4.0286 -0.0172 4.9614 36 1 1.4341 -2.0339 6.0463 37 1 3.2216 -2.0336 5.9250 38 1 3.4881 -1.4661 8.2541 39 1 2.0725 -2.5679 8.3067 40 1 1.8454 -0.1036 9.3767 41 1 0.5096 -0.7369 8.3646 42 1 2.5873 1.3480 7.7072 43 1 0.9070 1.2013 7.1198 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837892098.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:57 Heat of formation + Delta-G solvation = -197.893386 kcal Electronic energy + Delta-G solvation = -27120.427711 eV Core-core repulsion = 23028.923301 eV Total energy + Delta-G solvation = -4091.504411 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.30969 -47.26651 -40.01504 -38.67530 -36.55824 -35.10896 -33.57190 -31.09149 -29.81147 -29.04122 -26.68771 -25.81372 -25.47303 -24.41397 -21.39029 -20.85450 -20.24767 -19.11301 -18.26824 -18.04068 -17.69541 -16.19725 -16.04029 -15.69801 -15.43521 -14.91676 -14.75108 -14.48353 -14.26449 -13.98102 -13.62664 -13.44850 -13.18034 -12.99723 -12.96005 -12.84949 -12.72875 -12.32322 -11.94127 -11.50149 -11.43171 -11.39091 -11.27432 -10.96470 -10.92789 -10.79302 -10.77583 -10.48490 -10.38197 -10.25936 -9.77538 -9.74522 -9.39202 -8.89563 -8.78626 -8.43969 -6.08728 -4.19970 2.23031 2.75642 3.25883 3.30828 3.33843 3.46777 3.73887 3.87913 4.27353 4.34776 4.36428 4.63749 4.73624 4.89361 5.17597 5.18047 5.25445 5.39214 5.44625 5.64887 5.68372 5.84507 5.84839 5.99611 6.08641 6.12625 6.14236 6.36033 6.46543 6.72348 6.74211 6.82253 6.90963 7.23939 7.32487 7.46365 7.52565 7.63828 7.91891 7.97800 8.10036 8.30360 8.79849 9.46379 10.92705 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.032904 B = 0.003512 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.754066 B = 7970.751256 C = 8222.637611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 C -0.133 4.133 4 C -0.510 4.510 5 H 0.058 0.942 6 C 0.068 3.932 7 N -0.884 5.884 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.127 3.873 13 N -0.687 5.687 14 C 0.473 3.527 15 O -0.517 6.517 16 C 0.253 3.747 17 F -0.181 7.181 18 F -0.176 7.176 19 C 0.113 3.887 20 O -0.536 6.536 21 C -0.135 4.135 22 C -0.123 4.123 23 C -0.122 4.122 24 C -0.113 4.113 25 H 0.005 0.995 26 H 0.088 0.912 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.088 0.912 30 H 0.007 0.993 31 H 0.262 0.738 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.406 0.594 35 H 0.386 0.614 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.089 0.911 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.282 -0.477 17.983 17.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.055 3.945 3 C -0.191 4.191 4 C -0.548 4.548 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.522 5.522 8 Si 0.723 3.277 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.005 3.995 13 N -0.336 5.336 14 C 0.253 3.747 15 O -0.395 6.395 16 C 0.212 3.788 17 F -0.162 7.162 18 F -0.157 7.157 19 C 0.070 3.930 20 O -0.344 6.344 21 C -0.172 4.172 22 C -0.160 4.160 23 C -0.160 4.160 24 C -0.150 4.150 25 H 0.024 0.976 26 H 0.107 0.893 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.106 0.894 30 H 0.026 0.974 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.243 0.757 35 H 0.236 0.764 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.108 0.892 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.565 -0.664 18.369 18.390 hybrid contribution -0.162 -0.206 -1.575 1.596 sum 0.403 -0.869 16.794 16.822 Atomic orbital electron populations 1.21860 0.97613 0.99329 1.00283 1.18384 0.92938 0.92879 0.90258 1.21859 0.98711 0.98183 1.00336 1.20892 1.31917 1.12268 0.89743 0.92382 1.24880 0.94750 0.94878 0.98902 1.69786 1.36359 1.22591 1.23511 0.86603 0.79247 0.79765 0.82074 1.20240 1.21273 1.20227 1.21984 0.98638 0.96083 0.82788 1.46445 1.50241 1.31282 1.05653 1.20635 0.83032 0.85953 0.85123 1.90741 1.37824 1.25089 1.85801 1.22403 0.82701 0.76879 0.96798 1.93060 1.96514 1.31446 1.95204 1.93052 1.40510 1.88498 1.93676 1.22608 0.82406 0.96596 0.91412 1.86560 1.27740 1.68779 1.51317 1.23019 1.04651 0.93042 0.96521 1.22523 1.00207 0.98395 0.94889 1.22368 1.00367 0.95030 0.98204 1.22166 1.01801 0.98624 0.92437 0.97558 0.89335 0.95270 0.95245 0.89364 0.97446 0.92808 0.91819 0.91873 0.75696 0.76404 0.90180 0.88869 0.90976 0.91013 0.90925 0.91046 0.89233 0.90302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 2 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 3 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 4 C -0.51 -12.95 8.01 -34.44 -0.28 -13.22 16 5 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.88 -23.16 9.35 55.43 0.52 -22.64 16 8 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 C 0.13 2.54 4.50 -4.04 -0.02 2.52 16 13 N -0.69 -12.02 4.89 -60.29 -0.29 -12.31 16 14 C 0.47 7.78 6.55 -10.99 -0.07 7.71 16 15 O -0.52 -9.05 13.21 4.79 0.06 -8.98 16 16 C 0.25 3.67 1.24 -27.88 -0.03 3.63 16 17 F -0.18 -2.72 16.08 2.25 0.04 -2.68 16 18 F -0.18 -2.56 15.80 2.25 0.04 -2.52 16 19 C 0.11 1.45 0.65 -89.50 -0.06 1.39 16 20 O -0.54 -7.22 12.83 -36.00 -0.46 -7.68 16 21 C -0.13 -1.61 4.40 -25.03 -0.11 -1.72 16 22 C -0.12 -1.15 6.91 -24.70 -0.17 -1.32 16 23 C -0.12 -1.08 6.83 -25.07 -0.17 -1.26 16 24 C -0.11 -1.23 5.90 -25.62 -0.15 -1.38 16 25 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 26 H 0.09 2.18 6.07 -51.93 -0.32 1.86 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.09 2.17 6.07 -51.93 -0.32 1.85 16 30 H 0.01 0.13 6.86 -51.93 -0.36 -0.22 16 31 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 32 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.41 6.89 5.72 -40.82 -0.23 6.65 16 35 H 0.39 4.93 7.44 45.56 0.34 5.27 16 36 H 0.08 1.02 7.26 -51.93 -0.38 0.64 16 37 H 0.09 1.18 7.24 -51.93 -0.38 0.81 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.09 0.95 7.95 -51.93 -0.41 0.54 16 43 H 0.08 0.85 7.32 -51.93 -0.38 0.47 16 LS Contribution 339.80 15.07 5.12 5.12 Total: -1.00 -26.17 339.80 -6.34 -32.52 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -5.71 Total: 10.04 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -0.63 Total: -6.12 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.22 Total: -34.95 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.40 Total: -16.66 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 0.07 Total: -5.20 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -26.17 -6.34 -32.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837892098.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.377 kcal (2) G-P(sol) polarization free energy of solvation -26.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds