Wall clock time and date at job start Tue Mar 31 2020 08:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50700 * 109.47092 * 239.99574 * 2 1 3 5 5 H 1.08002 * 119.99770 * 239.99893 * 4 2 1 6 6 C 1.37876 * 119.99720 * 60.00211 * 4 2 1 7 7 N 1.31514 * 120.00513 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99651 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47037 * 59.99882 * 8 6 4 10 10 H 1.48501 * 109.46667 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47133 * 299.99829 * 8 6 4 12 12 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 13 13 N 1.46499 * 109.47198 * 299.99984 * 12 2 1 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 2 15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 12 16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 12 17 17 F 1.39902 * 109.47301 * 324.99488 * 16 14 13 18 18 F 1.39897 * 109.47311 * 84.99824 * 16 14 13 19 19 C 1.53005 * 109.47086 * 204.99721 * 16 14 13 20 20 O 1.42900 * 110.01544 * 59.29602 * 19 16 14 21 21 C 1.54270 * 110.03262 * 297.90924 * 19 16 14 22 22 C 1.54954 * 104.15929 * 217.13584 * 21 19 16 23 23 C 1.54891 * 102.78040 * 37.88617 * 22 21 19 24 24 C 1.53871 * 110.03787 * 180.68918 * 19 16 14 25 25 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 26 26 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 27 27 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 30 30 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 31 31 H 0.96999 * 120.00239 * 180.02562 * 7 6 4 32 32 H 1.09009 * 109.46730 * 179.97438 * 12 2 1 33 33 H 1.08998 * 109.46846 * 60.00315 * 12 2 1 34 34 H 0.97001 * 119.99790 * 359.97438 * 13 12 2 35 35 H 0.96704 * 114.00017 * 300.70393 * 20 19 16 36 36 H 1.09005 * 110.48347 * 335.78282 * 21 19 16 37 37 H 1.09003 * 110.48752 * 98.42002 * 21 19 16 38 38 H 1.09001 * 110.71947 * 279.56858 * 22 21 19 39 39 H 1.09008 * 110.76796 * 156.21768 * 22 21 19 40 40 H 1.09002 * 110.48589 * 203.40816 * 23 22 21 41 41 H 1.08994 * 110.48702 * 80.76264 * 23 22 21 42 42 H 1.08997 * 110.03583 * 238.57274 * 24 19 16 43 43 H 1.09004 * 110.02925 * 359.97438 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3225 -1.1198 -4.0079 9 1 1.8281 -2.5200 -4.0080 10 1 1.8279 -0.4195 -5.2204 11 1 3.8075 -1.1192 -4.0077 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8818 -0.4877 3.6695 15 8 2.5790 -1.4738 3.7808 16 6 1.3845 0.2264 4.8999 17 9 1.3371 1.6027 4.6532 18 9 0.1031 -0.2343 5.2206 19 6 2.3330 -0.0499 6.0683 20 8 3.6500 0.4017 5.7465 21 6 2.3549 -1.5594 6.3856 22 6 2.4588 -1.6205 7.9305 23 6 1.5590 -0.4431 8.3813 24 6 1.8277 0.6597 7.3367 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 0.7090 1.1613 -3.4845 32 1 3.1300 -0.7216 1.2491 33 1 1.6766 -1.7488 1.2493 34 1 0.9942 0.7584 2.3564 35 1 4.0286 -0.0172 4.9614 36 1 1.4341 -2.0339 6.0463 37 1 3.2216 -2.0336 5.9250 38 1 3.4881 -1.4661 8.2541 39 1 2.0725 -2.5679 8.3067 40 1 1.8454 -0.1036 9.3767 41 1 0.5096 -0.7369 8.3646 42 1 2.5873 1.3480 7.7072 43 1 0.9070 1.2013 7.1198 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837892098.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:56 Heat of formation + Delta-G solvation = -213.588961 kcal Electronic energy + Delta-G solvation = -27121.108323 eV Core-core repulsion = 23028.923301 eV Total energy + Delta-G solvation = -4092.185022 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.48827 -48.44598 -41.28946 -39.78789 -38.20031 -36.04183 -35.21818 -32.89490 -30.90870 -29.88386 -28.02153 -27.62665 -27.30222 -25.84906 -22.46550 -21.93335 -21.25710 -20.75866 -19.67713 -19.14921 -18.86809 -17.86519 -17.18639 -16.92694 -16.79011 -16.46777 -16.15404 -15.83136 -15.40554 -15.20494 -14.85547 -14.76460 -14.54289 -14.39551 -14.38156 -14.09010 -13.81729 -13.66624 -13.25715 -13.13646 -12.86850 -12.71555 -12.65597 -12.36473 -12.30826 -12.14965 -12.13842 -11.81887 -11.55048 -11.54547 -11.42990 -11.31225 -10.88656 -10.73788 -10.44174 -10.23810 -8.03942 -6.20568 0.89197 1.43212 1.44758 1.47650 1.53224 2.35585 2.44908 2.65221 2.76601 3.14702 3.20242 3.42579 3.60893 3.67559 4.16031 4.29018 4.35040 4.38289 4.42554 4.50414 4.63146 4.67880 4.82133 4.87342 4.97188 4.98711 5.00642 5.02877 5.10982 5.12885 5.15388 5.23585 5.41274 5.43821 5.61127 5.65014 6.08262 6.10032 6.17434 6.30139 6.38109 6.67268 6.84631 7.47739 8.95045 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.032904 B = 0.003512 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.754066 B = 7970.751256 C = 8222.637611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.050 3.950 3 C -0.123 4.123 4 C -0.528 4.528 5 H 0.051 0.949 6 C 0.028 3.972 7 N -0.900 5.900 8 Si 0.947 3.053 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.143 3.857 13 N -0.688 5.688 14 C 0.473 3.527 15 O -0.526 6.526 16 C 0.258 3.742 17 F -0.183 7.183 18 F -0.175 7.175 19 C 0.109 3.891 20 O -0.542 6.542 21 C -0.136 4.136 22 C -0.118 4.118 23 C -0.117 4.117 24 C -0.115 4.115 25 H 0.029 0.971 26 H 0.064 0.936 27 H 0.022 0.978 28 H 0.024 0.976 29 H 0.063 0.937 30 H 0.030 0.970 31 H 0.260 0.740 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.410 0.590 35 H 0.386 0.614 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.283 -0.597 19.663 19.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.050 3.950 3 C -0.181 4.181 4 C -0.567 4.567 5 H 0.069 0.931 6 C -0.172 4.172 7 N -0.539 5.539 8 Si 0.774 3.226 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.020 3.980 13 N -0.338 5.338 14 C 0.254 3.746 15 O -0.404 6.404 16 C 0.217 3.783 17 F -0.164 7.164 18 F -0.155 7.155 19 C 0.066 3.934 20 O -0.350 6.350 21 C -0.174 4.174 22 C -0.155 4.155 23 C -0.155 4.155 24 C -0.152 4.152 25 H 0.048 0.952 26 H 0.082 0.918 27 H 0.041 0.959 28 H 0.043 0.957 29 H 0.082 0.918 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.247 0.753 35 H 0.236 0.764 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.112 0.888 41 H 0.095 0.905 42 H 0.111 0.889 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.565 -0.782 20.068 20.091 hybrid contribution -0.162 -0.175 -2.087 2.100 sum 0.403 -0.957 17.982 18.011 Atomic orbital electron populations 1.21709 0.97372 0.98867 1.00213 1.18382 0.93111 0.93060 0.90492 1.21701 0.98274 0.97901 1.00222 1.21210 1.31948 1.12352 0.91183 0.93063 1.25478 0.95075 0.95538 1.01116 1.69906 1.36914 1.23313 1.23743 0.85787 0.78686 0.78776 0.79388 1.20131 1.21125 1.20078 1.21565 0.98112 0.95414 0.82900 1.46294 1.50697 1.31438 1.05406 1.20984 0.82517 0.85766 0.85315 1.90741 1.38048 1.25541 1.86072 1.22404 0.83146 0.76430 0.96293 1.93059 1.96550 1.31546 1.95244 1.93056 1.40450 1.88482 1.93560 1.22853 0.81655 0.97537 0.91329 1.86559 1.28069 1.68981 1.51354 1.23003 1.03598 0.92163 0.98611 1.22531 1.00806 0.99520 0.92661 1.22394 1.00635 0.93906 0.98531 1.22256 1.01768 0.99256 0.91909 0.95176 0.91751 0.95856 0.95722 0.91816 0.95108 0.93010 0.92381 0.92796 0.75274 0.76358 0.91131 0.90022 0.90570 0.89508 0.88819 0.90465 0.88929 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.46 8.08 71.98 0.58 -4.88 16 2 C 0.05 2.25 0.50 -52.93 -0.03 2.23 16 3 C -0.12 -5.41 8.08 71.98 0.58 -4.83 16 4 C -0.53 -26.96 8.01 25.60 0.21 -26.76 16 5 H 0.05 2.62 7.74 -2.91 -0.02 2.60 16 6 C 0.03 1.44 5.15 84.65 0.44 1.87 16 7 N -0.90 -47.48 9.35 21.45 0.20 -47.28 16 8 Si 0.95 41.64 29.54 68.60 2.03 43.67 16 9 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 10 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 12 C 0.14 5.66 4.50 86.38 0.39 6.05 16 13 N -0.69 -23.40 4.89 -463.05 -2.26 -25.66 16 14 C 0.47 15.13 6.55 87.66 0.57 15.70 16 15 O -0.53 -18.09 13.21 -2.31 -0.03 -18.12 16 16 C 0.26 7.13 1.24 29.85 0.04 7.17 16 17 F -0.18 -5.20 16.08 44.97 0.72 -4.48 16 18 F -0.17 -4.78 15.80 44.97 0.71 -4.07 16 19 C 0.11 2.63 0.65 -10.07 -0.01 2.63 16 20 O -0.54 -13.94 12.83 -148.25 -1.90 -15.85 16 21 C -0.14 -3.06 4.40 31.69 0.14 -2.92 16 22 C -0.12 -1.92 6.91 31.91 0.22 -1.70 16 23 C -0.12 -1.74 6.83 31.67 0.22 -1.52 16 24 C -0.11 -2.23 5.90 31.32 0.18 -2.05 16 25 H 0.03 1.14 6.86 -2.39 -0.02 1.12 16 26 H 0.06 3.17 6.07 -2.38 -0.01 3.16 16 27 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.06 3.14 6.07 -2.38 -0.01 3.12 16 30 H 0.03 1.16 6.86 -2.39 -0.02 1.15 16 31 H 0.26 13.31 8.31 -92.71 -0.77 12.54 16 32 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 33 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.41 13.30 5.72 -92.71 -0.53 12.77 16 35 H 0.39 9.62 7.44 -74.05 -0.55 9.07 16 36 H 0.07 1.71 7.26 -2.38 -0.02 1.69 16 37 H 0.08 2.01 7.24 -2.39 -0.02 1.99 16 38 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.09 1.75 7.95 -2.39 -0.02 1.73 16 43 H 0.08 1.53 7.32 -2.39 -0.02 1.52 16 Total: -1.00 -54.59 339.80 2.95 -51.64 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: -0.04 Total: 29.16 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: 3.53 Total: -9.01 kcal Atomic # 7 Polarization: -70.88 SS G_CDS: -2.06 Total: -72.95 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -1.93 Total: -33.96 kcal Atomic # 9 Polarization: -9.98 SS G_CDS: 1.43 Total: -8.55 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -54.59 2.95 -51.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837892098.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.947 kcal (2) G-P(sol) polarization free energy of solvation -54.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds