Wall clock time and date at job start Tue Mar 31 2020 08:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47134 * 2 1 4 4 C 1.50700 * 109.46779 * 185.66903 * 3 2 1 5 5 N 1.27939 * 119.99963 * 264.99656 * 4 3 2 6 6 Si 1.86800 * 119.99710 * 84.99979 * 4 3 2 7 7 H 1.48500 * 109.47600 * 60.00138 * 6 4 3 8 8 H 1.48507 * 109.46730 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47489 * 299.99626 * 6 4 3 10 10 C 1.50692 * 109.47368 * 65.66843 * 3 2 1 11 11 O 1.21280 * 119.99996 * 34.78868 * 10 3 2 12 12 N 1.34783 * 119.99880 * 214.78811 * 10 3 2 13 13 C 1.46506 * 119.99596 * 175.04424 * 12 10 3 14 14 C 1.50699 * 109.46834 * 180.02562 * 13 12 10 15 15 C 1.38242 * 120.00002 * 270.27542 * 14 13 12 16 16 C 1.38231 * 119.99824 * 180.28089 * 15 14 13 17 17 C 1.38234 * 120.00340 * 359.46213 * 16 15 14 18 18 Si 1.86798 * 120.00075 * 180.27897 * 17 16 15 19 19 C 1.86297 * 109.47233 * 90.00236 * 18 17 16 20 20 C 1.86297 * 109.46964 * 209.99985 * 18 17 16 21 21 C 1.86302 * 109.47220 * 329.99997 * 18 17 16 22 22 C 1.38238 * 119.99864 * 0.25948 * 17 16 15 23 23 C 1.38233 * 119.99888 * 359.97438 * 22 17 16 24 24 H 1.09003 * 109.47374 * 294.87048 * 1 2 3 25 25 H 1.09002 * 109.46882 * 54.86271 * 1 2 3 26 26 H 1.08997 * 109.47306 * 174.86570 * 1 2 3 27 27 H 1.08995 * 109.46844 * 239.99279 * 2 1 3 28 28 H 1.09001 * 109.46656 * 119.99415 * 2 1 3 29 29 H 1.09005 * 109.46806 * 305.66794 * 3 2 1 30 30 H 0.97005 * 120.00166 * 180.02562 * 5 4 3 31 31 H 0.96993 * 119.99767 * 355.04116 * 12 10 3 32 32 H 1.08994 * 109.47328 * 59.99876 * 13 12 10 33 33 H 1.09000 * 109.46846 * 299.99203 * 13 12 10 34 34 H 1.08002 * 119.99424 * 0.02562 * 15 14 13 35 35 H 1.08002 * 119.99768 * 179.74393 * 16 15 14 36 36 H 1.09003 * 109.47140 * 59.99611 * 19 18 17 37 37 H 1.08998 * 109.47642 * 179.97438 * 19 18 17 38 38 H 1.09001 * 109.47142 * 300.00240 * 19 18 17 39 39 H 1.09003 * 109.47215 * 60.00482 * 20 18 17 40 40 H 1.08998 * 109.47363 * 180.02562 * 20 18 17 41 41 H 1.08998 * 109.47787 * 300.00161 * 20 18 17 42 42 H 1.09001 * 109.46672 * 60.00056 * 21 18 17 43 43 H 1.08998 * 109.46645 * 179.97438 * 21 18 17 44 44 H 1.08997 * 109.46792 * 300.00434 * 21 18 17 45 45 H 1.07993 * 120.00117 * 180.02562 * 22 17 16 46 46 H 1.08004 * 120.00283 * 180.02562 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5405 1.4447 -0.1404 5 7 4.2804 1.5059 0.9016 6 14 4.3200 1.3582 -1.8357 7 1 3.8826 2.5261 -2.6419 8 1 5.7990 1.3758 -1.7019 9 1 3.8985 0.1047 -2.5111 10 6 1.6556 2.1113 1.2945 11 8 1.6329 1.4711 2.3244 12 7 1.3370 3.4208 1.3078 13 6 0.8589 4.0458 2.5437 14 6 0.5743 5.5040 2.2915 15 6 1.5724 6.4439 2.4690 16 6 1.3096 7.7821 2.2433 17 6 0.0519 8.1793 1.8295 18 14 -0.3009 9.9869 1.5170 19 6 0.0719 10.3939 -0.2623 20 6 -2.0954 10.3397 1.8719 21 6 0.7690 11.0299 2.6299 22 6 -0.9446 7.2389 1.6464 23 6 -0.6832 5.9012 1.8768 24 1 -0.3634 0.4322 0.9324 25 1 -0.3633 0.5915 -0.8404 26 1 -0.3634 -1.0235 -0.0920 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.5962 1.9848 -0.8349 30 1 5.2462 1.5077 0.8113 31 1 1.4243 3.9494 0.4993 32 1 1.6217 3.9525 3.3167 33 1 -0.0541 3.5493 2.8722 34 1 2.5563 6.1329 2.7880 35 1 2.0883 8.5168 2.3860 36 1 -0.5541 9.7836 -0.9135 37 1 -0.1344 11.4485 -0.4448 38 1 1.1218 10.1874 -0.4700 39 1 -2.3135 10.1017 2.9130 40 1 -2.3014 11.3943 1.6892 41 1 -2.7214 9.7295 1.2209 42 1 1.8189 10.8234 2.4222 43 1 0.5634 12.0846 2.4472 44 1 0.5509 10.7917 3.6709 45 1 -1.9270 7.5492 1.3227 46 1 -1.4616 5.1663 1.7334 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846249465.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:26:52 Heat of formation + Delta-G solvation = -45.285390 kcal Electronic energy + Delta-G solvation = -22552.355577 eV Core-core repulsion = 19371.248983 eV Total energy + Delta-G solvation = -3181.106593 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.00796 -39.97094 -37.18744 -35.73850 -34.51270 -32.24584 -31.89326 -29.65427 -29.28780 -28.47358 -28.44924 -26.79289 -23.47412 -23.30864 -22.64452 -21.97409 -20.40238 -18.79935 -17.66371 -17.07276 -16.63200 -16.50605 -15.94461 -15.81493 -15.24335 -14.90716 -14.62000 -14.47830 -14.35311 -14.28478 -14.11797 -14.04919 -13.89104 -13.80493 -13.54224 -13.35890 -13.27671 -13.25274 -13.13585 -12.97819 -12.68647 -12.63551 -12.41824 -12.24013 -11.95642 -11.76374 -11.43785 -11.10133 -10.93740 -10.86945 -10.70612 -9.96686 -9.86337 -9.79607 -9.61265 0.19269 0.52123 0.70846 0.91240 1.27426 1.60220 1.67836 1.70453 1.81589 1.88834 1.95379 2.39459 2.51263 2.98808 3.37848 3.72558 3.87400 3.92021 3.93918 4.11462 4.16631 4.40550 4.42898 4.49578 4.58261 4.66682 4.66872 4.69060 4.71850 4.72495 4.72980 4.77333 4.79790 4.80290 4.88317 5.02131 5.09319 5.15490 5.30008 5.36226 5.38277 5.43892 5.47789 5.50074 5.55166 5.60551 5.65359 6.10323 6.63101 6.80564 7.45699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C -0.078 4.078 4 C -0.007 4.007 5 N -0.611 5.611 6 Si 0.937 3.063 7 H -0.233 1.233 8 H -0.246 1.246 9 H -0.231 1.231 10 C 0.536 3.464 11 O -0.520 6.520 12 N -0.731 5.731 13 C 0.162 3.838 14 C -0.099 4.099 15 C -0.112 4.112 16 C -0.090 4.090 17 C -0.364 4.364 18 Si 1.059 2.941 19 C -0.449 4.449 20 C -0.450 4.450 21 C -0.450 4.450 22 C -0.090 4.090 23 C -0.112 4.112 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.341 0.659 31 H 0.399 0.601 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.122 0.878 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.794 3.161 -4.854 5.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.144 4.144 3 C -0.101 4.101 4 C -0.256 4.256 5 N -0.223 5.223 6 Si 0.751 3.249 7 H -0.156 1.156 8 H -0.169 1.169 9 H -0.154 1.154 10 C 0.321 3.679 11 O -0.394 6.394 12 N -0.384 5.384 13 C 0.039 3.961 14 C -0.100 4.100 15 C -0.131 4.131 16 C -0.108 4.108 17 C -0.406 4.406 18 Si 1.251 2.749 19 C -0.556 4.556 20 C -0.558 4.558 21 C -0.558 4.558 22 C -0.108 4.108 23 C -0.131 4.131 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.123 0.877 30 H 0.158 0.842 31 H 0.233 0.767 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.140 0.860 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.604 2.618 -3.840 4.686 hybrid contribution 0.596 0.148 -0.618 0.871 sum -0.009 2.766 -4.458 5.247 Atomic orbital electron populations 1.21808 0.94803 1.02471 1.02100 1.21385 0.96577 0.92610 1.03787 1.20765 0.92738 0.99387 0.97167 1.30095 0.97532 0.94173 1.03824 1.68241 1.12091 1.07091 1.34919 0.85713 0.80250 0.83601 0.75296 1.15591 1.16868 1.15370 1.20109 0.75855 0.81439 0.90493 1.90696 1.50803 1.64007 1.33912 1.46084 1.68786 1.10116 1.13392 1.20170 1.00282 0.88406 0.87259 1.19898 0.94412 0.94644 1.01035 1.21189 0.98683 0.93331 0.99863 1.21087 0.96881 0.95449 0.97392 1.27432 0.95606 1.15873 1.01662 0.78183 0.67121 0.62344 0.67271 1.26123 1.05217 1.05181 1.19110 1.26139 1.19214 1.05157 1.05249 1.26142 1.09706 1.09526 1.10416 1.21087 0.99025 0.92742 0.97960 1.21178 0.96215 0.96495 0.99196 0.92354 0.92533 0.91906 0.90688 0.89839 0.87671 0.84216 0.76703 0.90631 0.90741 0.86213 0.86069 0.91176 0.91033 0.91197 0.91041 0.90959 0.91176 0.91199 0.90957 0.91041 0.86024 0.86134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.03 9.65 37.16 0.36 0.39 16 2 C -0.10 -0.02 5.13 -26.73 -0.14 -0.15 16 3 C -0.08 0.00 2.11 -92.93 -0.20 -0.19 16 4 C -0.01 0.00 4.83 -13.90 -0.07 -0.07 16 5 N -0.61 -1.23 12.91 56.23 0.73 -0.50 16 6 Si 0.94 -1.86 29.20 -169.99 -4.96 -6.82 16 7 H -0.23 0.48 7.11 56.52 0.40 0.88 16 8 H -0.25 0.26 7.11 56.52 0.40 0.66 16 9 H -0.23 0.39 7.11 56.52 0.40 0.80 16 10 C 0.54 1.46 5.27 -10.99 -0.06 1.40 16 11 O -0.52 -3.59 15.98 5.56 0.09 -3.50 16 12 N -0.73 -0.51 5.55 -61.47 -0.34 -0.86 16 13 C 0.16 0.20 5.80 -5.19 -0.03 0.17 16 14 C -0.10 -0.06 5.25 -104.62 -0.55 -0.60 16 15 C -0.11 -0.06 9.70 -39.58 -0.38 -0.44 16 16 C -0.09 0.01 9.29 -39.59 -0.37 -0.35 16 17 C -0.36 0.27 4.59 -39.58 -0.18 0.09 16 18 Si 1.06 -3.05 12.32 -169.99 -2.09 -5.14 16 19 C -0.45 0.88 8.65 101.05 0.87 1.76 16 20 C -0.45 0.93 8.53 101.05 0.86 1.79 16 21 C -0.45 0.89 8.53 101.05 0.86 1.75 16 22 C -0.09 0.04 9.29 -39.58 -0.37 -0.33 16 23 C -0.11 -0.01 9.70 -39.58 -0.38 -0.40 16 24 H 0.06 0.09 7.43 -51.93 -0.39 -0.29 16 25 H 0.06 -0.10 8.14 -51.93 -0.42 -0.52 16 26 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 27 H 0.07 -0.13 7.82 -51.93 -0.41 -0.54 16 28 H 0.08 0.21 7.65 -51.93 -0.40 -0.19 16 29 H 0.11 -0.34 7.84 -51.93 -0.41 -0.75 16 30 H 0.34 0.05 8.23 -40.82 -0.34 -0.29 16 31 H 0.40 -0.58 8.46 -40.82 -0.35 -0.92 16 32 H 0.08 0.19 8.09 -51.93 -0.42 -0.23 16 33 H 0.07 0.12 8.08 -51.93 -0.42 -0.30 16 34 H 0.12 -0.01 8.06 -52.49 -0.42 -0.43 16 35 H 0.12 -0.22 7.43 -52.49 -0.39 -0.61 16 36 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 37 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 38 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 39 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 40 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 41 H 0.07 -0.16 7.69 -51.93 -0.40 -0.56 16 42 H 0.07 -0.15 7.69 -51.93 -0.40 -0.55 16 43 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 44 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 45 H 0.12 -0.26 7.43 -52.49 -0.39 -0.65 16 46 H 0.12 -0.12 8.06 -52.48 -0.42 -0.54 16 LS Contribution 385.58 15.07 5.81 5.81 Total: 0.00 -6.89 385.58 -8.62 -15.50 By element: Atomic # 1 Polarization: -1.22 SS G_CDS: -8.08 Total: -9.30 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 0.23 Total: 4.82 kcal Atomic # 7 Polarization: -1.74 SS G_CDS: 0.38 Total: -1.36 kcal Atomic # 8 Polarization: -3.59 SS G_CDS: 0.09 Total: -3.50 kcal Atomic # 14 Polarization: -4.91 SS G_CDS: -7.06 Total: -11.97 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -6.89 -8.62 -15.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846249465.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.783 kcal (2) G-P(sol) polarization free energy of solvation -6.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds