Wall clock time and date at job start Tue Mar 31 2020 08:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47134 * 2 1 4 4 C 1.50700 * 109.46779 * 185.66903 * 3 2 1 5 5 N 1.27939 * 119.99963 * 264.99656 * 4 3 2 6 6 Si 1.86800 * 119.99710 * 84.99979 * 4 3 2 7 7 H 1.48500 * 109.47600 * 60.00138 * 6 4 3 8 8 H 1.48507 * 109.46730 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47489 * 299.99626 * 6 4 3 10 10 C 1.50692 * 109.47368 * 65.66843 * 3 2 1 11 11 O 1.21280 * 119.99996 * 34.78868 * 10 3 2 12 12 N 1.34783 * 119.99880 * 214.78811 * 10 3 2 13 13 C 1.46506 * 119.99596 * 175.04424 * 12 10 3 14 14 C 1.50699 * 109.46834 * 180.02562 * 13 12 10 15 15 C 1.38242 * 120.00002 * 270.27542 * 14 13 12 16 16 C 1.38231 * 119.99824 * 180.28089 * 15 14 13 17 17 C 1.38234 * 120.00340 * 359.46213 * 16 15 14 18 18 Si 1.86798 * 120.00075 * 180.27897 * 17 16 15 19 19 C 1.86297 * 109.47233 * 90.00236 * 18 17 16 20 20 C 1.86297 * 109.46964 * 209.99985 * 18 17 16 21 21 C 1.86302 * 109.47220 * 329.99997 * 18 17 16 22 22 C 1.38238 * 119.99864 * 0.25948 * 17 16 15 23 23 C 1.38233 * 119.99888 * 359.97438 * 22 17 16 24 24 H 1.09003 * 109.47374 * 294.87048 * 1 2 3 25 25 H 1.09002 * 109.46882 * 54.86271 * 1 2 3 26 26 H 1.08997 * 109.47306 * 174.86570 * 1 2 3 27 27 H 1.08995 * 109.46844 * 239.99279 * 2 1 3 28 28 H 1.09001 * 109.46656 * 119.99415 * 2 1 3 29 29 H 1.09005 * 109.46806 * 305.66794 * 3 2 1 30 30 H 0.97005 * 120.00166 * 180.02562 * 5 4 3 31 31 H 0.96993 * 119.99767 * 355.04116 * 12 10 3 32 32 H 1.08994 * 109.47328 * 59.99876 * 13 12 10 33 33 H 1.09000 * 109.46846 * 299.99203 * 13 12 10 34 34 H 1.08002 * 119.99424 * 0.02562 * 15 14 13 35 35 H 1.08002 * 119.99768 * 179.74393 * 16 15 14 36 36 H 1.09003 * 109.47140 * 59.99611 * 19 18 17 37 37 H 1.08998 * 109.47642 * 179.97438 * 19 18 17 38 38 H 1.09001 * 109.47142 * 300.00240 * 19 18 17 39 39 H 1.09003 * 109.47215 * 60.00482 * 20 18 17 40 40 H 1.08998 * 109.47363 * 180.02562 * 20 18 17 41 41 H 1.08998 * 109.47787 * 300.00161 * 20 18 17 42 42 H 1.09001 * 109.46672 * 60.00056 * 21 18 17 43 43 H 1.08998 * 109.46645 * 179.97438 * 21 18 17 44 44 H 1.08997 * 109.46792 * 300.00434 * 21 18 17 45 45 H 1.07993 * 120.00117 * 180.02562 * 22 17 16 46 46 H 1.08004 * 120.00283 * 180.02562 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5405 1.4447 -0.1404 5 7 4.2804 1.5059 0.9016 6 14 4.3200 1.3582 -1.8357 7 1 3.8826 2.5261 -2.6419 8 1 5.7990 1.3758 -1.7019 9 1 3.8985 0.1047 -2.5111 10 6 1.6556 2.1113 1.2945 11 8 1.6329 1.4711 2.3244 12 7 1.3370 3.4208 1.3078 13 6 0.8589 4.0458 2.5437 14 6 0.5743 5.5040 2.2915 15 6 1.5724 6.4439 2.4690 16 6 1.3096 7.7821 2.2433 17 6 0.0519 8.1793 1.8295 18 14 -0.3009 9.9869 1.5170 19 6 0.0719 10.3939 -0.2623 20 6 -2.0954 10.3397 1.8719 21 6 0.7690 11.0299 2.6299 22 6 -0.9446 7.2389 1.6464 23 6 -0.6832 5.9012 1.8768 24 1 -0.3634 0.4322 0.9324 25 1 -0.3633 0.5915 -0.8404 26 1 -0.3634 -1.0235 -0.0920 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.5962 1.9848 -0.8349 30 1 5.2462 1.5077 0.8113 31 1 1.4243 3.9494 0.4993 32 1 1.6217 3.9525 3.3167 33 1 -0.0541 3.5493 2.8722 34 1 2.5563 6.1329 2.7880 35 1 2.0883 8.5168 2.3860 36 1 -0.5541 9.7836 -0.9135 37 1 -0.1344 11.4485 -0.4448 38 1 1.1218 10.1874 -0.4700 39 1 -2.3135 10.1017 2.9130 40 1 -2.3014 11.3943 1.6892 41 1 -2.7214 9.7295 1.2209 42 1 1.8189 10.8234 2.4222 43 1 0.5634 12.0846 2.4472 44 1 0.5509 10.7917 3.6709 45 1 -1.9270 7.5492 1.3227 46 1 -1.4616 5.1663 1.7334 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846249465.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:26:52 Heat of formation + Delta-G solvation = -37.412255 kcal Electronic energy + Delta-G solvation = -22552.014172 eV Core-core repulsion = 19371.248983 eV Total energy + Delta-G solvation = -3180.765189 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.16537 -39.98125 -37.25174 -35.92067 -34.56097 -32.29338 -31.85676 -29.53300 -29.24933 -28.28634 -28.25395 -26.86189 -23.44337 -23.34844 -22.70687 -22.03084 -20.49039 -18.86268 -17.64602 -17.17398 -16.71039 -16.57654 -15.97153 -15.81102 -15.30226 -14.93398 -14.64364 -14.42936 -14.29727 -14.14463 -13.97029 -13.94185 -13.84311 -13.73262 -13.48029 -13.45838 -13.11053 -13.09650 -12.97631 -12.95435 -12.65208 -12.56162 -12.41221 -12.13182 -11.91373 -11.78518 -11.42477 -11.03852 -10.84590 -10.74840 -10.73845 -10.14803 -9.87375 -9.78818 -9.60684 0.21146 0.53646 0.76649 1.01918 1.45805 1.71592 1.76881 1.85859 1.89990 2.03353 2.06312 2.35231 2.68073 2.99778 3.38646 3.67835 3.84127 3.91513 3.95921 4.15529 4.18923 4.35630 4.39912 4.55679 4.61318 4.64673 4.76005 4.82819 4.85539 4.86225 4.88783 4.89801 4.90325 4.90890 4.92229 5.02396 5.11261 5.18950 5.27737 5.33702 5.42411 5.43683 5.59598 5.60628 5.64560 5.69375 5.72135 6.14205 6.54903 6.85304 7.30329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.104 4.104 3 C -0.084 4.084 4 C -0.009 4.009 5 N -0.655 5.655 6 Si 0.988 3.012 7 H -0.223 1.223 8 H -0.264 1.264 9 H -0.228 1.228 10 C 0.532 3.468 11 O -0.571 6.571 12 N -0.720 5.720 13 C 0.167 3.833 14 C -0.105 4.105 15 C -0.125 4.125 16 C -0.100 4.100 17 C -0.374 4.374 18 Si 1.128 2.872 19 C -0.461 4.461 20 C -0.463 4.463 21 C -0.465 4.465 22 C -0.098 4.098 23 C -0.120 4.120 24 H 0.033 0.967 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.100 0.900 28 H 0.051 0.949 29 H 0.145 0.855 30 H 0.346 0.654 31 H 0.411 0.589 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.118 0.882 35 H 0.136 0.864 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.140 0.860 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.293 4.180 -7.016 8.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.143 4.143 3 C -0.106 4.106 4 C -0.256 4.256 5 N -0.269 5.269 6 Si 0.801 3.199 7 H -0.145 1.145 8 H -0.187 1.187 9 H -0.151 1.151 10 C 0.319 3.681 11 O -0.449 6.449 12 N -0.373 5.373 13 C 0.044 3.956 14 C -0.106 4.106 15 C -0.144 4.144 16 C -0.118 4.118 17 C -0.413 4.413 18 Si 1.315 2.685 19 C -0.568 4.568 20 C -0.570 4.570 21 C -0.572 4.572 22 C -0.116 4.116 23 C -0.139 4.139 24 H 0.052 0.948 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.118 0.882 28 H 0.070 0.930 29 H 0.163 0.837 30 H 0.163 0.837 31 H 0.248 0.752 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.136 0.864 35 H 0.154 0.846 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.158 0.842 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.115 3.656 -6.011 7.123 hybrid contribution 0.738 -0.145 0.097 0.759 sum -0.376 3.511 -5.914 6.888 Atomic orbital electron populations 1.21794 0.94501 1.02923 1.01712 1.21380 0.96847 0.92665 1.03410 1.21019 0.93311 0.99481 0.96784 1.30688 0.97298 0.92363 1.05231 1.68296 1.12778 1.09132 1.36670 0.85017 0.78442 0.83890 0.72549 1.14466 1.18743 1.15075 1.20692 0.74831 0.81641 0.90970 1.90668 1.53101 1.65183 1.35945 1.46034 1.67760 1.09778 1.13699 1.20025 0.99242 0.89225 0.87132 1.19812 0.94938 0.93879 1.01926 1.21303 0.98756 0.93937 1.00409 1.21346 0.97728 0.95375 0.97308 1.27983 0.95207 1.17397 1.00738 0.77148 0.65699 0.59897 0.65792 1.26263 1.05160 1.05412 1.19922 1.26290 1.20140 1.05439 1.05139 1.26322 1.10273 1.10062 1.10554 1.21391 1.00013 0.92507 0.97684 1.21341 0.96102 0.97225 0.99205 0.94800 0.90262 0.91574 0.88168 0.93027 0.83729 0.83686 0.75248 0.92582 0.91457 0.86363 0.84646 0.91161 0.90781 0.91368 0.91428 0.90755 0.90755 0.91016 0.90744 0.91478 0.84204 0.85358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.05 9.65 71.98 0.69 0.74 16 2 C -0.10 -0.06 5.13 30.60 0.16 0.09 16 3 C -0.08 0.01 2.11 -12.29 -0.03 -0.02 16 4 C -0.01 0.00 4.83 88.68 0.43 0.43 16 5 N -0.66 -3.63 12.91 24.11 0.31 -3.32 16 6 Si 0.99 -5.41 29.20 68.60 2.00 -3.41 16 7 H -0.22 1.55 7.11 99.48 0.71 2.26 16 8 H -0.26 0.69 7.11 99.48 0.71 1.40 16 9 H -0.23 1.32 7.11 99.48 0.71 2.03 16 10 C 0.53 3.73 5.27 87.65 0.46 4.19 16 11 O -0.57 -9.63 15.98 -3.03 -0.05 -9.68 16 12 N -0.72 -1.87 5.55 -466.78 -2.59 -4.46 16 13 C 0.17 0.77 5.80 85.63 0.50 1.27 16 14 C -0.11 -0.23 5.25 -19.86 -0.10 -0.34 16 15 C -0.13 -0.25 9.70 22.27 0.22 -0.04 16 16 C -0.10 0.03 9.29 22.27 0.21 0.23 16 17 C -0.37 0.75 4.59 22.27 0.10 0.86 16 18 Si 1.13 -7.53 12.32 68.60 0.85 -6.68 16 19 C -0.46 2.29 8.65 113.37 0.98 3.27 16 20 C -0.46 2.36 8.53 113.37 0.97 3.32 16 21 C -0.47 2.10 8.53 113.37 0.97 3.07 16 22 C -0.10 0.13 9.29 22.27 0.21 0.34 16 23 C -0.12 -0.06 9.70 22.27 0.22 0.16 16 24 H 0.03 0.16 7.43 -2.39 -0.02 0.15 16 25 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 26 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 27 H 0.10 -0.47 7.82 -2.39 -0.02 -0.49 16 28 H 0.05 0.38 7.65 -2.39 -0.02 0.36 16 29 H 0.15 -1.24 7.84 -2.38 -0.02 -1.26 16 30 H 0.35 0.68 8.23 -92.70 -0.76 -0.09 16 31 H 0.41 -1.13 8.46 -92.71 -0.78 -1.92 16 32 H 0.06 0.47 8.09 -2.39 -0.02 0.45 16 33 H 0.07 0.39 8.08 -2.39 -0.02 0.37 16 34 H 0.12 0.17 8.06 -2.91 -0.02 0.15 16 35 H 0.14 -0.52 7.43 -2.91 -0.02 -0.55 16 36 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 37 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 38 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 39 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 40 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 41 H 0.07 -0.43 7.69 -2.39 -0.02 -0.45 16 42 H 0.07 -0.34 7.69 -2.39 -0.02 -0.36 16 43 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 44 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 45 H 0.14 -0.77 7.43 -2.91 -0.02 -0.79 16 46 H 0.13 -0.23 8.06 -2.91 -0.02 -0.25 16 Total: 0.00 -18.49 385.58 6.66 -11.83 By element: Atomic # 1 Polarization: -2.03 SS G_CDS: 0.16 Total: -1.86 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: 5.97 Total: 17.58 kcal Atomic # 7 Polarization: -5.50 SS G_CDS: -2.28 Total: -7.78 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -0.05 Total: -9.68 kcal Atomic # 14 Polarization: -12.94 SS G_CDS: 2.85 Total: -10.09 kcal Total: -18.49 6.66 -11.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846249465.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.578 kcal (2) G-P(sol) polarization free energy of solvation -18.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds