Wall clock time and date at job start Tue Mar 31 2020 08:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47079 * 2 1 4 4 C 1.53001 * 109.47241 * 120.00245 * 2 1 3 5 5 C 1.50703 * 109.46650 * 300.00302 * 4 2 1 6 6 O 1.21286 * 120.00513 * 359.97438 * 5 4 2 7 7 N 1.34782 * 119.99960 * 180.02562 * 5 4 2 8 8 C 1.37088 * 120.00323 * 179.97438 * 7 5 4 9 9 H 1.08005 * 119.99847 * 223.94099 * 8 7 5 10 10 C 1.38946 * 120.00365 * 43.93395 * 8 7 5 11 11 N 1.31413 * 119.99583 * 24.03261 * 10 8 7 12 12 Si 1.86798 * 120.00401 * 204.03085 * 10 8 7 13 13 H 1.48502 * 109.47039 * 180.02562 * 12 10 8 14 14 H 1.48494 * 109.47189 * 300.00137 * 12 10 8 15 15 H 1.48496 * 109.47124 * 60.00023 * 12 10 8 16 16 C 1.46508 * 119.99507 * 359.97438 * 7 5 4 17 17 C 1.52999 * 117.49303 * 189.96924 * 16 7 5 18 18 C 1.52998 * 117.49560 * 121.31033 * 16 7 5 19 19 C 1.50699 * 109.47032 * 240.00021 * 2 1 3 20 20 C 1.38253 * 119.97324 * 239.72818 * 19 2 1 21 21 C 1.38198 * 120.02232 * 179.72775 * 20 19 2 22 22 C 1.38463 * 119.97662 * 0.56816 * 21 20 19 23 23 F 1.35094 * 120.02756 * 179.68319 * 22 21 20 24 24 C 1.38462 * 119.94691 * 359.70637 * 22 21 20 25 25 C 1.38200 * 119.97560 * 359.97438 * 24 22 21 26 26 H 1.08998 * 109.47242 * 299.99842 * 1 2 3 27 27 H 1.09002 * 109.47147 * 60.00192 * 1 2 3 28 28 H 1.09003 * 109.47162 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46737 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47622 * 300.00011 * 3 2 1 31 31 H 1.08999 * 109.47438 * 60.00195 * 3 2 1 32 32 H 1.08998 * 109.47220 * 180.02562 * 4 2 1 33 33 H 1.08998 * 109.47110 * 59.99263 * 4 2 1 34 34 H 0.97004 * 120.00423 * 5.19759 * 11 10 8 35 35 H 1.08994 * 115.55196 * 335.64232 * 16 7 5 36 36 H 1.08992 * 117.50370 * 0.02562 * 17 16 7 37 37 H 1.09001 * 117.49773 * 145.02920 * 17 16 7 38 38 H 1.08993 * 117.50210 * 214.97707 * 18 16 7 39 39 H 1.08999 * 117.50128 * 359.97438 * 18 16 7 40 40 H 1.07994 * 119.98794 * 359.97438 * 20 19 2 41 41 H 1.08001 * 120.00999 * 180.25115 * 21 20 19 42 42 H 1.08000 * 120.01088 * 179.97438 * 24 22 21 43 43 H 1.07995 * 119.98956 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5375 -0.0109 2.4797 6 8 0.8406 0.9755 2.3684 7 7 1.8635 -0.4711 3.7038 8 6 1.4070 0.1754 4.8232 9 1 2.0747 0.3559 5.6527 10 6 0.0852 0.5986 4.8906 11 7 -0.8318 0.0084 4.1573 12 14 -0.3882 2.0064 6.0234 13 1 -1.8468 2.2621 5.9122 14 1 -0.0546 1.6473 7.4252 15 1 0.3602 3.2283 5.6340 16 6 2.7059 -1.6622 3.8382 17 6 2.8498 -2.2717 5.2341 18 6 4.0217 -1.5141 4.6048 19 6 2.0323 -0.7104 -1.2305 20 6 2.8317 -1.8311 -1.1030 21 6 3.2883 -2.4867 -2.2307 22 6 2.9545 -2.0138 -3.4885 23 9 3.4056 -2.6501 -4.5916 24 6 2.1585 -0.8880 -3.6149 25 6 1.6976 -0.2379 -2.4858 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.1300 -0.7209 1.2494 33 1 1.6766 -1.7489 1.2492 34 1 -0.6014 -0.7701 3.6265 35 1 2.6922 -2.3459 2.9894 36 1 2.3176 -1.7869 6.0524 37 1 2.9313 -3.3565 5.3037 38 1 4.8734 -2.1006 4.2607 39 1 4.2608 -0.5304 5.0088 40 1 3.0962 -2.1968 -0.1218 41 1 3.9094 -3.3646 -2.1308 42 1 1.8979 -0.5180 -4.5956 43 1 1.0764 0.6400 -2.5842 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864998577.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:23 Heat of formation + Delta-G solvation = -24.970362 kcal Electronic energy + Delta-G solvation = -25703.882732 eV Core-core repulsion = 22050.646051 eV Total energy + Delta-G solvation = -3653.236681 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.90906 -40.03794 -38.68624 -36.69576 -35.07007 -32.90151 -31.39064 -30.89170 -29.28530 -27.81960 -26.69887 -24.49595 -22.91157 -22.70953 -21.80094 -21.34247 -19.94001 -18.64183 -17.82704 -16.76174 -16.47721 -16.08035 -15.61183 -15.25631 -14.77569 -14.51999 -14.38097 -13.78423 -13.69053 -13.57241 -13.51537 -13.39328 -13.05966 -12.77302 -12.34209 -12.22298 -11.83141 -11.52222 -11.30794 -11.22470 -11.02542 -10.76955 -10.62680 -10.56830 -10.47710 -10.18888 -10.15350 -10.10907 -9.86113 -9.70713 -9.11547 -8.62392 -8.46896 -7.96364 -7.32785 -6.40307 -3.91128 1.16929 1.22155 3.40345 3.50689 3.60185 3.65038 3.87428 4.24639 4.27189 4.60352 4.66457 4.70059 4.83652 4.92571 5.15847 5.28821 5.30014 5.41840 5.43252 5.48080 5.55250 5.66854 5.70243 5.88230 5.91819 6.01531 6.06448 6.09281 6.13149 6.16530 6.18872 6.21770 6.31748 6.36355 6.49088 6.53121 6.61992 6.73527 6.85450 6.88384 7.01948 7.17280 7.88038 8.37497 8.79110 9.18073 9.53786 10.07656 10.87813 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.020093 B = 0.004185 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.191491 B = 6688.331344 C = 7663.531565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.002 4.002 3 C -0.146 4.146 4 C -0.127 4.127 5 C 0.466 3.534 6 O -0.528 6.528 7 N -0.430 5.430 8 C -0.432 4.432 9 H 0.068 0.932 10 C 0.045 3.955 11 N -0.844 5.844 12 Si 1.073 2.927 13 H -0.282 1.282 14 H -0.290 1.290 15 H -0.285 1.285 16 C 0.066 3.934 17 C -0.175 4.175 18 C -0.202 4.202 19 C -0.065 4.065 20 C -0.097 4.097 21 C -0.151 4.151 22 C 0.080 3.920 23 F -0.146 7.146 24 C -0.152 4.152 25 C -0.087 4.087 26 H 0.104 0.896 27 H 0.043 0.957 28 H 0.041 0.959 29 H 0.042 0.958 30 H 0.044 0.956 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.270 0.730 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.136 0.864 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.139 -4.365 -9.884 12.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.003 4.003 3 C -0.203 4.203 4 C -0.168 4.168 5 C 0.255 3.745 6 O -0.408 6.408 7 N -0.151 5.151 8 C -0.558 4.558 9 H 0.086 0.914 10 C -0.168 4.168 11 N -0.475 5.475 12 Si 0.901 3.099 13 H -0.208 1.208 14 H -0.217 1.217 15 H -0.212 1.212 16 C -0.040 4.040 17 C -0.213 4.213 18 C -0.241 4.241 19 C -0.066 4.066 20 C -0.114 4.114 21 C -0.170 4.170 22 C 0.061 3.939 23 F -0.125 7.125 24 C -0.171 4.171 25 C -0.105 4.105 26 H 0.122 0.878 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.117 0.883 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.120 0.880 36 H 0.126 0.874 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.154 0.846 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.503 -2.928 -9.535 11.392 hybrid contribution 1.652 -1.498 -0.784 2.363 sum 7.154 -4.426 -10.319 13.313 Atomic orbital electron populations 1.22132 0.92750 1.01468 1.04089 1.19183 0.96627 0.95108 0.89353 1.22113 0.99661 0.94678 1.03873 1.21786 1.00997 0.99758 0.94252 1.19977 0.84746 0.86022 0.83754 1.90456 1.38573 1.26899 1.84849 1.43026 1.45228 1.21566 1.05275 1.19721 0.96999 1.41679 0.97381 0.91427 1.26089 0.91337 1.00297 0.99089 1.70592 1.35173 1.17515 1.24187 0.83459 0.76314 0.75824 0.74350 1.20765 1.21726 1.21178 1.21799 0.95074 0.92003 0.95080 1.23092 1.01862 0.98082 0.98220 1.23248 0.92182 1.02037 1.06608 1.20221 0.96060 0.95057 0.95233 1.21134 0.96832 0.94975 0.98506 1.21125 1.02936 1.01816 0.91100 1.17699 0.99446 0.94086 0.82678 1.91467 1.87701 1.81285 1.52072 1.21095 0.99983 0.95885 1.00128 1.20888 0.98971 0.99615 0.91013 0.87763 0.93800 0.93949 0.93928 0.93646 0.88301 0.90469 0.90730 0.91949 0.87956 0.87397 0.89865 0.89816 0.89003 0.84641 0.85057 0.85097 0.85039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 7.99 37.16 0.30 -2.31 16 2 C 0.00 -0.04 0.60 -155.66 -0.09 -0.13 16 3 C -0.15 -2.44 7.99 37.16 0.30 -2.14 16 4 C -0.13 -2.22 1.96 -27.88 -0.05 -2.27 16 5 C 0.47 10.62 5.89 -10.98 -0.06 10.56 16 6 O -0.53 -13.67 9.30 5.55 0.05 -13.62 16 7 N -0.43 -10.08 2.60 -107.73 -0.28 -10.36 16 8 C -0.43 -11.37 7.63 -14.94 -0.11 -11.48 16 9 H 0.07 1.78 7.60 -52.48 -0.40 1.38 16 10 C 0.05 1.23 4.19 -17.47 -0.07 1.16 16 11 N -0.84 -24.38 12.44 55.50 0.69 -23.69 16 12 Si 1.07 24.92 29.98 -169.99 -5.10 19.83 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 15 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 16 C 0.07 1.26 6.02 -67.93 -0.41 0.85 16 17 C -0.17 -3.08 9.82 -26.69 -0.26 -3.34 16 18 C -0.20 -3.37 10.25 -26.69 -0.27 -3.64 16 19 C -0.07 -0.91 4.76 -104.61 -0.50 -1.41 16 20 C -0.10 -1.24 8.97 -39.59 -0.36 -1.59 16 21 C -0.15 -1.81 10.03 -39.51 -0.40 -2.21 16 22 C 0.08 1.01 7.30 -39.42 -0.29 0.72 16 23 F -0.15 -1.88 17.27 2.25 0.04 -1.84 16 24 C -0.15 -1.81 10.03 -39.51 -0.40 -2.21 16 25 C -0.09 -1.10 8.71 -39.59 -0.34 -1.45 16 26 H 0.10 2.29 5.51 -51.93 -0.29 2.00 16 27 H 0.04 0.68 7.39 -51.93 -0.38 0.30 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.04 0.66 7.39 -51.93 -0.38 0.28 16 31 H 0.10 2.00 5.51 -51.93 -0.29 1.71 16 32 H 0.08 1.22 7.46 -51.93 -0.39 0.84 16 33 H 0.07 1.22 6.96 -51.93 -0.36 0.86 16 34 H 0.27 7.88 7.48 -40.82 -0.31 7.57 16 35 H 0.10 1.68 6.76 -51.93 -0.35 1.33 16 36 H 0.11 2.16 6.93 -51.93 -0.36 1.80 16 37 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 40 H 0.14 1.59 5.89 -52.49 -0.31 1.28 16 41 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 43 H 0.13 1.52 7.10 -52.49 -0.37 1.15 16 LS Contribution 343.83 15.07 5.18 5.18 Total: -1.00 -29.76 343.83 -8.38 -38.14 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -5.94 Total: 7.27 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: -3.03 Total: -20.90 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: 0.41 Total: -34.06 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.05 Total: -13.62 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -5.10 Total: 19.83 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.76 -8.38 -38.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864998577.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.169 kcal (2) G-P(sol) polarization free energy of solvation -29.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds