Wall clock time and date at job start Tue Mar 31 2020 08:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47079 * 2 1 4 4 C 1.53001 * 109.47241 * 120.00245 * 2 1 3 5 5 C 1.50703 * 109.46650 * 300.00302 * 4 2 1 6 6 O 1.21286 * 120.00513 * 359.97438 * 5 4 2 7 7 N 1.34782 * 119.99960 * 180.02562 * 5 4 2 8 8 C 1.37088 * 120.00323 * 179.97438 * 7 5 4 9 9 H 1.08005 * 119.99847 * 223.94099 * 8 7 5 10 10 C 1.38946 * 120.00365 * 43.93395 * 8 7 5 11 11 N 1.31413 * 119.99583 * 24.03261 * 10 8 7 12 12 Si 1.86798 * 120.00401 * 204.03085 * 10 8 7 13 13 H 1.48502 * 109.47039 * 180.02562 * 12 10 8 14 14 H 1.48494 * 109.47189 * 300.00137 * 12 10 8 15 15 H 1.48496 * 109.47124 * 60.00023 * 12 10 8 16 16 C 1.46508 * 119.99507 * 359.97438 * 7 5 4 17 17 C 1.52999 * 117.49303 * 189.96924 * 16 7 5 18 18 C 1.52998 * 117.49560 * 121.31033 * 16 7 5 19 19 C 1.50699 * 109.47032 * 240.00021 * 2 1 3 20 20 C 1.38253 * 119.97324 * 239.72818 * 19 2 1 21 21 C 1.38198 * 120.02232 * 179.72775 * 20 19 2 22 22 C 1.38463 * 119.97662 * 0.56816 * 21 20 19 23 23 F 1.35094 * 120.02756 * 179.68319 * 22 21 20 24 24 C 1.38462 * 119.94691 * 359.70637 * 22 21 20 25 25 C 1.38200 * 119.97560 * 359.97438 * 24 22 21 26 26 H 1.08998 * 109.47242 * 299.99842 * 1 2 3 27 27 H 1.09002 * 109.47147 * 60.00192 * 1 2 3 28 28 H 1.09003 * 109.47162 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46737 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47622 * 300.00011 * 3 2 1 31 31 H 1.08999 * 109.47438 * 60.00195 * 3 2 1 32 32 H 1.08998 * 109.47220 * 180.02562 * 4 2 1 33 33 H 1.08998 * 109.47110 * 59.99263 * 4 2 1 34 34 H 0.97004 * 120.00423 * 5.19759 * 11 10 8 35 35 H 1.08994 * 115.55196 * 335.64232 * 16 7 5 36 36 H 1.08992 * 117.50370 * 0.02562 * 17 16 7 37 37 H 1.09001 * 117.49773 * 145.02920 * 17 16 7 38 38 H 1.08993 * 117.50210 * 214.97707 * 18 16 7 39 39 H 1.08999 * 117.50128 * 359.97438 * 18 16 7 40 40 H 1.07994 * 119.98794 * 359.97438 * 20 19 2 41 41 H 1.08001 * 120.00999 * 180.25115 * 21 20 19 42 42 H 1.08000 * 120.01088 * 179.97438 * 24 22 21 43 43 H 1.07995 * 119.98956 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5375 -0.0109 2.4797 6 8 0.8406 0.9755 2.3684 7 7 1.8635 -0.4711 3.7038 8 6 1.4070 0.1754 4.8232 9 1 2.0747 0.3559 5.6527 10 6 0.0852 0.5986 4.8906 11 7 -0.8318 0.0084 4.1573 12 14 -0.3882 2.0064 6.0234 13 1 -1.8468 2.2621 5.9122 14 1 -0.0546 1.6473 7.4252 15 1 0.3602 3.2283 5.6340 16 6 2.7059 -1.6622 3.8382 17 6 2.8498 -2.2717 5.2341 18 6 4.0217 -1.5141 4.6048 19 6 2.0323 -0.7104 -1.2305 20 6 2.8317 -1.8311 -1.1030 21 6 3.2883 -2.4867 -2.2307 22 6 2.9545 -2.0138 -3.4885 23 9 3.4056 -2.6501 -4.5916 24 6 2.1585 -0.8880 -3.6149 25 6 1.6976 -0.2379 -2.4858 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.1300 -0.7209 1.2494 33 1 1.6766 -1.7489 1.2492 34 1 -0.6014 -0.7701 3.6265 35 1 2.6922 -2.3459 2.9894 36 1 2.3176 -1.7869 6.0524 37 1 2.9313 -3.3565 5.3037 38 1 4.8734 -2.1006 4.2607 39 1 4.2608 -0.5304 5.0088 40 1 3.0962 -2.1968 -0.1218 41 1 3.9094 -3.3646 -2.1308 42 1 1.8979 -0.5180 -4.5956 43 1 1.0764 0.6400 -2.5842 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864998577.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:23 Heat of formation + Delta-G solvation = -39.202194 kcal Electronic energy + Delta-G solvation = -25704.499870 eV Core-core repulsion = 22050.646051 eV Total energy + Delta-G solvation = -3653.853819 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.86293 -41.36991 -40.08776 -38.15555 -36.47331 -34.74588 -32.85026 -32.20695 -30.37711 -29.31178 -28.09074 -26.32714 -24.06921 -23.71810 -23.16872 -22.86699 -21.52496 -20.07158 -18.86483 -18.49946 -17.93360 -17.15010 -16.58733 -16.56487 -16.37623 -15.99174 -15.63528 -15.52111 -15.15866 -14.95206 -14.81384 -14.48010 -14.22561 -14.02745 -13.93725 -13.54193 -13.16904 -13.08745 -12.73021 -12.62620 -12.34351 -12.23830 -12.21360 -11.97298 -11.88448 -11.81833 -11.72979 -11.65468 -11.42821 -11.21926 -10.56485 -10.03180 -9.74787 -9.48321 -9.19872 -8.46680 -5.97376 0.18642 0.30481 1.50743 1.61679 1.77952 2.20487 2.49442 2.63739 2.97633 3.11789 3.31303 3.38322 3.63623 3.70149 3.98065 3.99499 4.06334 4.11325 4.13534 4.22203 4.33815 4.37270 4.42591 4.51501 4.64252 4.78545 4.83917 4.85408 4.95061 4.97515 5.03082 5.06440 5.12090 5.13673 5.19072 5.24236 5.29647 5.42845 5.57133 5.62845 5.70768 5.82225 5.95966 6.26548 6.94267 7.27803 7.62802 8.26587 8.77578 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.020093 B = 0.004185 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.191491 B = 6688.331344 C = 7663.531565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.005 3.995 3 C -0.141 4.141 4 C -0.114 4.114 5 C 0.456 3.544 6 O -0.566 6.566 7 N -0.452 5.452 8 C -0.433 4.433 9 H 0.059 0.941 10 C 0.001 3.999 11 N -0.875 5.875 12 Si 1.109 2.891 13 H -0.289 1.289 14 H -0.264 1.264 15 H -0.287 1.287 16 C 0.042 3.958 17 C -0.175 4.175 18 C -0.179 4.179 19 C -0.077 4.077 20 C -0.099 4.099 21 C -0.148 4.148 22 C 0.071 3.929 23 F -0.149 7.149 24 C -0.150 4.150 25 C -0.090 4.090 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.041 0.959 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.255 0.745 35 H 0.133 0.867 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.126 0.874 39 H 0.069 0.931 40 H 0.147 0.853 41 H 0.153 0.847 42 H 0.151 0.849 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.146 -5.870 -11.295 15.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.005 3.995 3 C -0.198 4.198 4 C -0.154 4.154 5 C 0.246 3.754 6 O -0.447 6.447 7 N -0.173 5.173 8 C -0.561 4.561 9 H 0.076 0.924 10 C -0.206 4.206 11 N -0.508 5.508 12 Si 0.933 3.067 13 H -0.214 1.214 14 H -0.189 1.189 15 H -0.214 1.214 16 C -0.063 4.063 17 C -0.213 4.213 18 C -0.217 4.217 19 C -0.077 4.077 20 C -0.117 4.117 21 C -0.167 4.167 22 C 0.052 3.948 23 F -0.128 7.128 24 C -0.168 4.168 25 C -0.108 4.108 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.118 0.882 33 H 0.107 0.893 34 H 0.065 0.935 35 H 0.151 0.849 36 H 0.093 0.907 37 H 0.135 0.865 38 H 0.144 0.856 39 H 0.088 0.912 40 H 0.165 0.835 41 H 0.171 0.829 42 H 0.169 0.831 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.541 -4.454 -10.927 14.003 hybrid contribution 1.113 -1.036 -0.397 1.572 sum 8.654 -5.490 -11.324 15.273 Atomic orbital electron populations 1.21985 0.94298 1.00897 1.02592 1.19024 0.95325 0.94982 0.90175 1.21994 1.00111 0.95013 1.02677 1.21729 1.02092 0.99725 0.91884 1.20924 0.83617 0.85782 0.85044 1.90458 1.39894 1.28669 1.85723 1.43246 1.46035 1.23235 1.04779 1.19776 0.96514 1.41727 0.98037 0.92360 1.27162 0.91970 1.01665 0.99836 1.70704 1.35654 1.18220 1.26188 0.82995 0.75544 0.73663 0.74520 1.21432 1.18894 1.21400 1.22127 0.95855 0.91307 0.96968 1.23103 1.02049 0.99869 0.96258 1.23259 0.92493 1.01348 1.04612 1.19980 0.97474 0.95890 0.94343 1.21244 0.96525 0.94524 0.99410 1.21332 1.02619 1.02209 0.90492 1.17915 0.99605 0.94342 0.82909 1.91466 1.87736 1.81339 1.52216 1.21293 0.99265 0.95446 1.00819 1.20989 0.99074 0.99994 0.90781 0.92388 0.92024 0.93981 0.92977 0.91926 0.92324 0.88239 0.89301 0.93492 0.84920 0.90688 0.86484 0.85639 0.91220 0.83512 0.82910 0.83087 0.84237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.02 7.99 71.98 0.57 -4.45 16 2 C 0.01 0.17 0.60 -52.93 -0.03 0.14 16 3 C -0.14 -4.65 7.99 71.98 0.57 -4.07 16 4 C -0.11 -3.83 1.96 29.85 0.06 -3.77 16 5 C 0.46 21.12 5.89 87.66 0.52 21.63 16 6 O -0.57 -30.59 9.30 -3.05 -0.03 -30.62 16 7 N -0.45 -21.39 2.60 -613.13 -1.59 -22.98 16 8 C -0.43 -23.47 7.63 84.04 0.64 -22.83 16 9 H 0.06 3.17 7.60 -2.91 -0.02 3.15 16 10 C 0.00 0.04 4.19 84.93 0.36 0.40 16 11 N -0.88 -52.68 12.44 21.66 0.27 -52.41 16 12 Si 1.11 51.81 29.98 68.60 2.06 53.87 16 13 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 14 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 15 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 16 C 0.04 1.53 6.02 44.99 0.27 1.80 16 17 C -0.18 -5.88 9.82 30.62 0.30 -5.58 16 18 C -0.18 -5.51 10.25 30.62 0.31 -5.19 16 19 C -0.08 -1.95 4.76 -19.86 -0.09 -2.05 16 20 C -0.10 -2.21 8.97 22.26 0.20 -2.01 16 21 C -0.15 -3.03 10.03 22.31 0.22 -2.80 16 22 C 0.07 1.57 7.30 22.38 0.16 1.73 16 23 F -0.15 -3.39 17.27 44.97 0.78 -2.61 16 24 C -0.15 -3.11 10.03 22.31 0.22 -2.88 16 25 C -0.09 -2.06 8.71 22.26 0.19 -1.87 16 26 H 0.06 2.67 5.51 -2.39 -0.01 2.65 16 27 H 0.06 1.90 7.39 -2.39 -0.02 1.88 16 28 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.06 1.79 7.39 -2.39 -0.02 1.77 16 31 H 0.06 2.45 5.51 -2.39 -0.01 2.43 16 32 H 0.10 2.89 7.46 -2.39 -0.02 2.87 16 33 H 0.09 2.73 6.96 -2.39 -0.02 2.71 16 34 H 0.26 15.61 7.48 -92.71 -0.69 14.92 16 35 H 0.13 3.93 6.76 -2.39 -0.02 3.92 16 36 H 0.07 3.03 6.93 -2.39 -0.02 3.01 16 37 H 0.12 3.10 8.14 -2.39 -0.02 3.09 16 38 H 0.13 2.85 8.14 -2.39 -0.02 2.83 16 39 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.15 2.88 5.89 -2.91 -0.02 2.86 16 41 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 42 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 43 H 0.14 2.89 7.10 -2.91 -0.02 2.87 16 Total: -1.00 -68.33 343.83 7.06 -61.26 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: 1.09 Total: 25.30 kcal Atomic # 6 Polarization: -36.29 SS G_CDS: 4.49 Total: -31.80 kcal Atomic # 7 Polarization: -74.07 SS G_CDS: -1.32 Total: -75.39 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -0.03 Total: -30.62 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.78 Total: -2.61 kcal Atomic # 14 Polarization: 51.81 SS G_CDS: 2.06 Total: 53.87 kcal Total: -68.33 7.06 -61.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864998577.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.062 kcal (2) G-P(sol) polarization free energy of solvation -68.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds