Wall clock time and date at job start Tue Mar 31 2020 09:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46977 * 2 1 4 4 C 1.53004 * 109.47208 * 240.00187 * 2 1 3 5 5 C 1.52999 * 109.46883 * 64.99904 * 4 2 1 6 6 C 1.50706 * 109.46946 * 180.02562 * 5 4 2 7 7 C 1.38240 * 119.97355 * 89.99636 * 6 5 4 8 8 C 1.38201 * 120.02456 * 179.74733 * 7 6 5 9 9 C 1.38463 * 119.97401 * 0.25578 * 8 7 6 10 10 F 1.35098 * 120.02788 * 180.02562 * 9 8 7 11 11 C 1.38455 * 119.94740 * 0.02562 * 9 8 7 12 12 C 1.38206 * 119.97818 * 359.97438 * 11 9 8 13 13 C 1.50700 * 109.47119 * 120.00152 * 2 1 3 14 14 O 1.21286 * 120.00053 * 120.00039 * 13 2 1 15 15 N 1.34782 * 119.99592 * 300.00264 * 13 2 1 16 16 C 1.37099 * 119.99513 * 180.02562 * 15 13 2 17 17 H 1.08004 * 119.99644 * 222.94194 * 16 15 13 18 18 C 1.38946 * 120.00197 * 42.93807 * 16 15 13 19 19 N 1.31410 * 120.00179 * 18.93426 * 18 16 15 20 20 Si 1.86804 * 119.99907 * 198.93142 * 18 16 15 21 21 H 1.48500 * 109.47301 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47321 * 120.00526 * 20 18 16 23 23 H 1.48509 * 109.46738 * 240.00203 * 20 18 16 24 24 C 1.46497 * 120.00317 * 359.97438 * 15 13 2 25 25 C 1.52999 * 117.49610 * 187.62723 * 24 15 13 26 26 C 1.52999 * 117.49780 * 118.96685 * 24 15 13 27 27 H 1.09004 * 109.47013 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47320 * 299.99981 * 1 2 3 29 29 H 1.09000 * 109.46943 * 59.99929 * 1 2 3 30 30 H 1.08996 * 109.46854 * 304.99913 * 4 2 1 31 31 H 1.08997 * 109.46630 * 185.00378 * 4 2 1 32 32 H 1.08996 * 109.47368 * 60.00325 * 5 4 2 33 33 H 1.08994 * 109.47468 * 299.99409 * 5 4 2 34 34 H 1.07994 * 119.98982 * 0.02974 * 7 6 5 35 35 H 1.07995 * 120.01428 * 180.28226 * 8 7 6 36 36 H 1.08004 * 120.01498 * 180.02562 * 11 9 8 37 37 H 1.07997 * 119.98874 * 180.02562 * 12 11 9 38 38 H 0.96996 * 120.00327 * 174.92357 * 19 18 16 39 39 H 1.08999 * 115.54613 * 333.30067 * 24 15 13 40 40 H 1.08996 * 117.50005 * 0.02562 * 25 24 15 41 41 H 1.09005 * 117.49304 * 145.02495 * 25 24 15 42 42 H 1.08990 * 117.50116 * 214.98004 * 26 24 15 43 43 H 1.09000 * 117.49758 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6353 0.0690 -2.4953 6 6 2.1371 -0.6417 -3.7259 7 6 1.3436 -1.5863 -4.3497 8 6 1.8007 -2.2349 -5.4813 9 6 3.0559 -1.9421 -5.9870 10 9 3.5036 -2.5751 -7.0933 11 6 3.8521 -1.0001 -5.3579 12 6 3.3929 -0.3527 -4.2264 13 6 2.0324 -0.7104 1.2304 14 8 2.7297 -1.6966 1.1191 15 7 1.7067 -0.2500 2.4546 16 6 2.1641 -0.8960 3.5739 17 1 1.5012 -1.0622 4.4103 18 6 3.4804 -1.3369 3.6325 19 7 4.3791 -0.8332 2.8167 20 14 3.9728 -2.6459 4.8710 21 1 2.7849 -3.0456 5.6674 22 1 4.5093 -3.8298 4.1530 23 1 5.0158 -2.1021 5.7776 24 6 0.8648 0.9414 2.5890 25 6 0.6770 1.5189 3.9933 26 6 -0.4761 0.7814 3.3080 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6055 -1.7197 -1.2952 31 1 3.1263 -0.7994 -1.2055 32 1 2.0699 1.0675 -2.4494 33 1 0.5490 0.1472 -2.5390 34 1 0.3644 -1.8142 -3.9554 35 1 1.1788 -2.9695 -5.9711 36 1 4.8312 -0.7706 -5.7516 37 1 4.0136 0.3824 -3.7358 38 1 5.3112 -1.0861 2.9059 39 1 0.9093 1.6446 1.7574 40 1 1.1801 1.0126 4.8171 41 1 0.5974 2.6021 4.0855 42 1 -1.3138 1.3796 2.9498 43 1 -0.7322 -0.2104 3.6807 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864999141.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:32 Heat of formation + Delta-G solvation = -29.727967 kcal Electronic energy + Delta-G solvation = -24778.502738 eV Core-core repulsion = 21125.059752 eV Total energy + Delta-G solvation = -3653.442986 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.93401 -39.39259 -38.78889 -36.28609 -34.94280 -32.72786 -31.84018 -31.18373 -30.61816 -27.82865 -25.19257 -24.52309 -23.09991 -22.15970 -21.69566 -21.06460 -20.47260 -18.76041 -17.71661 -16.56394 -16.41139 -16.04774 -15.64127 -15.48891 -14.83781 -14.53770 -14.27227 -14.00106 -13.80615 -13.70020 -13.51535 -13.06803 -12.95146 -12.65317 -12.45941 -12.20425 -11.69646 -11.42957 -11.32096 -11.22402 -11.04402 -10.90006 -10.84624 -10.77166 -10.55165 -10.34165 -10.17467 -10.08426 -9.83374 -9.65720 -9.16080 -8.69100 -8.52038 -7.88563 -6.97455 -6.08484 -3.82223 1.10621 1.18075 3.30475 3.40296 3.42419 3.53660 4.17213 4.21523 4.28934 4.65157 4.72302 4.80249 4.82013 4.92850 5.17081 5.23591 5.25250 5.44724 5.47935 5.54261 5.59316 5.71178 5.79148 5.81390 5.87315 5.90592 5.93865 6.05850 6.07584 6.14747 6.20218 6.22349 6.32118 6.35287 6.44772 6.54028 6.58950 6.75583 6.83574 6.85020 6.91309 6.95635 7.64674 8.30425 9.10746 9.21524 9.71773 10.36042 11.00758 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.017291 B = 0.003455 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.973166 B = 8101.465590 C = 9202.192858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.105 4.105 3 H 0.076 0.924 4 C -0.087 4.087 5 C -0.084 4.084 6 C -0.079 4.079 7 C -0.089 4.089 8 C -0.152 4.152 9 C 0.083 3.917 10 F -0.145 7.145 11 C -0.151 4.151 12 C -0.088 4.088 13 C 0.487 3.513 14 O -0.532 6.532 15 N -0.429 5.429 16 C -0.349 4.349 17 H 0.076 0.924 18 C 0.074 3.926 19 N -0.833 5.833 20 Si 0.909 3.091 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.286 1.286 24 C 0.081 3.919 25 C -0.179 4.179 26 C -0.209 4.209 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.262 0.738 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.927 4.562 -12.272 14.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.127 4.127 3 H 0.095 0.905 4 C -0.125 4.125 5 C -0.121 4.121 6 C -0.079 4.079 7 C -0.107 4.107 8 C -0.171 4.171 9 C 0.064 3.936 10 F -0.124 7.124 11 C -0.170 4.170 12 C -0.106 4.106 13 C 0.275 3.725 14 O -0.409 6.409 15 N -0.150 5.150 16 C -0.476 4.476 17 H 0.094 0.906 18 C -0.136 4.136 19 N -0.466 5.466 20 Si 0.737 3.263 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.213 1.213 24 C -0.026 4.026 25 C -0.217 4.217 26 C -0.248 4.248 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.072 0.928 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.331 3.945 -12.477 14.537 hybrid contribution 0.481 -0.616 0.435 0.894 sum -5.851 3.328 -12.042 13.796 Atomic orbital electron populations 1.22044 0.94577 1.02231 1.02044 1.21203 0.96291 1.00158 0.95088 0.90543 1.21284 1.02115 0.98425 0.90663 1.20783 1.01180 0.98667 0.91488 1.20098 0.94237 0.96840 0.96738 1.20947 1.00210 0.95281 0.94305 1.21113 0.95168 1.02400 0.98441 1.17709 0.94333 0.95705 0.85817 1.91475 1.89471 1.80798 1.50662 1.21133 1.00547 0.97775 0.97565 1.20994 0.95452 0.99357 0.94786 1.19725 0.83560 0.85793 0.83446 1.90523 1.37756 1.27302 1.85343 1.42789 1.45429 1.21644 1.05123 1.18874 0.94721 1.37521 0.96495 0.90612 1.25191 0.95539 0.96824 0.96073 1.69833 1.01305 1.39665 1.35805 0.86201 0.78331 0.81891 0.79919 1.19632 1.20696 1.21254 1.21691 0.93807 0.91998 0.95072 1.23131 1.02062 0.98380 0.98130 1.23331 0.92466 1.01912 1.07069 0.92797 0.90988 0.92994 0.91680 0.91058 0.90925 0.90683 0.85001 0.85006 0.84957 0.84886 0.92755 0.87783 0.87558 0.89939 0.89870 0.89119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 8.57 37.16 0.32 -1.94 16 2 C -0.11 -1.91 1.94 -91.77 -0.18 -2.09 16 3 H 0.08 1.32 7.57 -51.93 -0.39 0.93 16 4 C -0.09 -1.45 4.01 -26.73 -0.11 -1.56 16 5 C -0.08 -1.04 5.10 -27.88 -0.14 -1.18 16 6 C -0.08 -0.97 5.13 -104.61 -0.54 -1.51 16 7 C -0.09 -1.03 9.70 -39.59 -0.38 -1.41 16 8 C -0.15 -1.74 10.03 -39.51 -0.40 -2.13 16 9 C 0.08 1.03 7.30 -39.42 -0.29 0.74 16 10 F -0.15 -1.85 17.27 2.25 0.04 -1.81 16 11 C -0.15 -1.77 10.03 -39.51 -0.40 -2.17 16 12 C -0.09 -1.05 9.70 -39.59 -0.38 -1.44 16 13 C 0.49 12.01 6.37 -10.98 -0.07 11.94 16 14 O -0.53 -15.47 13.58 5.55 0.08 -15.40 16 15 N -0.43 -10.51 2.85 -107.73 -0.31 -10.82 16 16 C -0.35 -9.48 7.83 -14.93 -0.12 -9.59 16 17 H 0.08 2.01 7.40 -52.48 -0.39 1.62 16 18 C 0.07 2.09 4.36 -17.47 -0.08 2.01 16 19 N -0.83 -24.63 11.67 55.50 0.65 -23.98 16 20 Si 0.91 22.02 29.60 -169.99 -5.03 16.99 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.08 1.56 4.30 -67.93 -0.29 1.27 16 25 C -0.18 -3.18 9.81 -26.69 -0.26 -3.44 16 26 C -0.21 -3.46 9.39 -26.69 -0.25 -3.71 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.07 4.37 -51.93 -0.23 0.85 16 29 H 0.05 0.61 6.57 -51.93 -0.34 0.27 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.07 1.38 7.95 -51.93 -0.41 0.97 16 32 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 33 H 0.07 0.81 6.51 -51.93 -0.34 0.47 16 34 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 37 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 38 H 0.26 7.45 8.32 -40.82 -0.34 7.11 16 39 H 0.10 1.79 6.24 -51.93 -0.32 1.47 16 40 H 0.11 2.12 6.83 -51.93 -0.35 1.77 16 41 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 LS Contribution 352.62 15.07 5.31 5.31 Total: -1.00 -32.59 352.62 -8.96 -41.55 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -6.14 Total: 4.37 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -3.56 Total: -16.21 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: 0.34 Total: -34.80 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: 0.08 Total: -15.40 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.59 -8.96 -41.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864999141.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.825 kcal (2) G-P(sol) polarization free energy of solvation -32.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds