Wall clock time and date at job start Tue Mar 31 2020 09:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46977 * 2 1 4 4 C 1.53004 * 109.47208 * 240.00187 * 2 1 3 5 5 C 1.52999 * 109.46883 * 64.99904 * 4 2 1 6 6 C 1.50706 * 109.46946 * 180.02562 * 5 4 2 7 7 C 1.38240 * 119.97355 * 89.99636 * 6 5 4 8 8 C 1.38201 * 120.02456 * 179.74733 * 7 6 5 9 9 C 1.38463 * 119.97401 * 0.25578 * 8 7 6 10 10 F 1.35098 * 120.02788 * 180.02562 * 9 8 7 11 11 C 1.38455 * 119.94740 * 0.02562 * 9 8 7 12 12 C 1.38206 * 119.97818 * 359.97438 * 11 9 8 13 13 C 1.50700 * 109.47119 * 120.00152 * 2 1 3 14 14 O 1.21286 * 120.00053 * 120.00039 * 13 2 1 15 15 N 1.34782 * 119.99592 * 300.00264 * 13 2 1 16 16 C 1.37099 * 119.99513 * 180.02562 * 15 13 2 17 17 H 1.08004 * 119.99644 * 222.94194 * 16 15 13 18 18 C 1.38946 * 120.00197 * 42.93807 * 16 15 13 19 19 N 1.31410 * 120.00179 * 18.93426 * 18 16 15 20 20 Si 1.86804 * 119.99907 * 198.93142 * 18 16 15 21 21 H 1.48500 * 109.47301 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47321 * 120.00526 * 20 18 16 23 23 H 1.48509 * 109.46738 * 240.00203 * 20 18 16 24 24 C 1.46497 * 120.00317 * 359.97438 * 15 13 2 25 25 C 1.52999 * 117.49610 * 187.62723 * 24 15 13 26 26 C 1.52999 * 117.49780 * 118.96685 * 24 15 13 27 27 H 1.09004 * 109.47013 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47320 * 299.99981 * 1 2 3 29 29 H 1.09000 * 109.46943 * 59.99929 * 1 2 3 30 30 H 1.08996 * 109.46854 * 304.99913 * 4 2 1 31 31 H 1.08997 * 109.46630 * 185.00378 * 4 2 1 32 32 H 1.08996 * 109.47368 * 60.00325 * 5 4 2 33 33 H 1.08994 * 109.47468 * 299.99409 * 5 4 2 34 34 H 1.07994 * 119.98982 * 0.02974 * 7 6 5 35 35 H 1.07995 * 120.01428 * 180.28226 * 8 7 6 36 36 H 1.08004 * 120.01498 * 180.02562 * 11 9 8 37 37 H 1.07997 * 119.98874 * 180.02562 * 12 11 9 38 38 H 0.96996 * 120.00327 * 174.92357 * 19 18 16 39 39 H 1.08999 * 115.54613 * 333.30067 * 24 15 13 40 40 H 1.08996 * 117.50005 * 0.02562 * 25 24 15 41 41 H 1.09005 * 117.49304 * 145.02495 * 25 24 15 42 42 H 1.08990 * 117.50116 * 214.98004 * 26 24 15 43 43 H 1.09000 * 117.49758 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6353 0.0690 -2.4953 6 6 2.1371 -0.6417 -3.7259 7 6 1.3436 -1.5863 -4.3497 8 6 1.8007 -2.2349 -5.4813 9 6 3.0559 -1.9421 -5.9870 10 9 3.5036 -2.5751 -7.0933 11 6 3.8521 -1.0001 -5.3579 12 6 3.3929 -0.3527 -4.2264 13 6 2.0324 -0.7104 1.2304 14 8 2.7297 -1.6966 1.1191 15 7 1.7067 -0.2500 2.4546 16 6 2.1641 -0.8960 3.5739 17 1 1.5012 -1.0622 4.4103 18 6 3.4804 -1.3369 3.6325 19 7 4.3791 -0.8332 2.8167 20 14 3.9728 -2.6459 4.8710 21 1 2.7849 -3.0456 5.6674 22 1 4.5093 -3.8298 4.1530 23 1 5.0158 -2.1021 5.7776 24 6 0.8648 0.9414 2.5890 25 6 0.6770 1.5189 3.9933 26 6 -0.4761 0.7814 3.3080 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6055 -1.7197 -1.2952 31 1 3.1263 -0.7994 -1.2055 32 1 2.0699 1.0675 -2.4494 33 1 0.5490 0.1472 -2.5390 34 1 0.3644 -1.8142 -3.9554 35 1 1.1788 -2.9695 -5.9711 36 1 4.8312 -0.7706 -5.7516 37 1 4.0136 0.3824 -3.7358 38 1 5.3112 -1.0861 2.9059 39 1 0.9093 1.6446 1.7574 40 1 1.1801 1.0126 4.8171 41 1 0.5974 2.6021 4.0855 42 1 -1.3138 1.3796 2.9498 43 1 -0.7322 -0.2104 3.6807 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864999141.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:32 Heat of formation + Delta-G solvation = -46.974929 kcal Electronic energy + Delta-G solvation = -24779.250622 eV Core-core repulsion = 21125.059752 eV Total energy + Delta-G solvation = -3654.190870 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.89275 -40.75932 -40.05565 -37.85971 -36.38591 -34.63669 -33.18832 -32.33023 -32.06084 -28.98935 -27.03752 -25.81130 -23.98517 -23.57067 -23.04860 -22.47355 -21.78462 -20.43490 -18.65113 -18.23338 -17.80714 -17.36855 -16.70448 -16.62223 -16.55915 -16.02360 -15.79553 -15.37193 -15.09833 -14.86844 -14.47364 -14.43128 -14.29250 -14.07569 -13.76956 -13.50003 -13.14476 -12.97697 -12.74886 -12.71942 -12.51630 -12.32441 -12.27355 -12.17457 -12.01180 -11.91982 -11.73228 -11.43002 -11.31710 -11.13610 -10.69021 -10.04268 -9.79125 -9.46291 -8.90404 -8.18309 -5.93943 0.17273 0.29999 1.33483 1.41277 1.48436 2.28727 2.48089 2.61795 3.12670 3.18606 3.31002 3.42839 3.78548 3.79925 3.98602 4.01752 4.13160 4.18632 4.28436 4.32997 4.37874 4.38729 4.49329 4.64170 4.66127 4.74184 4.87522 4.94009 4.97946 5.07784 5.10280 5.15445 5.17448 5.19972 5.21155 5.31049 5.35301 5.49672 5.50926 5.53167 5.57723 5.69314 5.97071 6.23140 7.08164 7.27978 7.78422 8.45858 8.90518 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.017291 B = 0.003455 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.973166 B = 8101.465590 C = 9202.192858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 H 0.089 0.911 4 C -0.077 4.077 5 C -0.070 4.070 6 C -0.092 4.092 7 C -0.092 4.092 8 C -0.155 4.155 9 C 0.067 3.933 10 F -0.151 7.151 11 C -0.158 4.158 12 C -0.098 4.098 13 C 0.468 3.532 14 O -0.592 6.592 15 N -0.446 5.446 16 C -0.355 4.355 17 H 0.074 0.926 18 C 0.022 3.978 19 N -0.871 5.871 20 Si 0.963 3.037 21 H -0.258 1.258 22 H -0.297 1.297 23 H -0.273 1.273 24 C 0.054 3.946 25 C -0.181 4.181 26 C -0.179 4.179 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.047 0.953 31 H 0.032 0.968 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.141 0.859 38 H 0.257 0.743 39 H 0.131 0.869 40 H 0.076 0.924 41 H 0.117 0.883 42 H 0.128 0.872 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.482 6.229 -12.838 17.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.108 0.892 4 C -0.115 4.115 5 C -0.107 4.107 6 C -0.093 4.093 7 C -0.110 4.110 8 C -0.174 4.174 9 C 0.048 3.952 10 F -0.130 7.130 11 C -0.177 4.177 12 C -0.116 4.116 13 C 0.258 3.742 14 O -0.474 6.474 15 N -0.166 5.166 16 C -0.483 4.483 17 H 0.092 0.908 18 C -0.184 4.184 19 N -0.506 5.506 20 Si 0.789 3.211 21 H -0.182 1.182 22 H -0.224 1.224 23 H -0.199 1.199 24 C -0.051 4.051 25 C -0.218 4.218 26 C -0.217 4.217 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.113 0.887 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.104 0.896 33 H 0.119 0.881 34 H 0.170 0.830 35 H 0.169 0.831 36 H 0.164 0.836 37 H 0.159 0.841 38 H 0.066 0.934 39 H 0.149 0.851 40 H 0.094 0.906 41 H 0.135 0.865 42 H 0.146 0.854 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.929 5.650 -13.012 16.762 hybrid contribution 1.217 -1.135 0.627 1.779 sum -7.712 4.514 -12.385 15.272 Atomic orbital electron populations 1.22008 0.91423 1.02221 1.04346 1.21163 0.98716 0.99713 0.92099 0.89248 1.21141 0.99477 0.98372 0.92525 1.20670 1.02773 0.98305 0.88921 1.20220 0.94599 0.97459 0.96976 1.21221 1.01014 0.94677 0.94086 1.21376 0.95010 1.02564 0.98434 1.17968 0.95066 0.96191 0.86009 1.91458 1.89605 1.80947 1.50954 1.21334 1.01208 0.97610 0.97538 1.21197 0.95727 0.99745 0.94966 1.20934 0.82491 0.85487 0.85270 1.90476 1.40329 1.30048 1.86522 1.43040 1.45800 1.23255 1.04533 1.19095 0.94510 1.37524 0.97149 0.90789 1.25964 0.95925 0.98533 0.97942 1.69938 1.01198 1.41480 1.38020 0.85354 0.78600 0.78969 0.78166 1.18218 1.22431 1.19855 1.22011 0.94980 0.91112 0.97030 1.23185 1.02375 1.00248 0.96024 1.23337 0.92422 1.01404 1.04580 0.93972 0.90598 0.88703 0.93418 0.94904 0.89587 0.88082 0.82971 0.83113 0.83633 0.84084 0.93400 0.85122 0.90575 0.86519 0.85432 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 8.57 71.98 0.62 -3.16 16 2 C -0.10 -3.34 1.94 -11.54 -0.02 -3.37 16 3 H 0.09 2.90 7.57 -2.39 -0.02 2.88 16 4 C -0.08 -2.55 4.01 30.59 0.12 -2.43 16 5 C -0.07 -1.55 5.10 29.85 0.15 -1.39 16 6 C -0.09 -2.13 5.13 -19.86 -0.10 -2.23 16 7 C -0.09 -1.93 9.70 22.26 0.22 -1.72 16 8 C -0.16 -3.31 10.03 22.31 0.22 -3.08 16 9 C 0.07 1.60 7.30 22.38 0.16 1.76 16 10 F -0.15 -3.77 17.27 44.97 0.78 -2.99 16 11 C -0.16 -3.62 10.03 22.31 0.22 -3.39 16 12 C -0.10 -2.28 9.70 22.26 0.22 -2.06 16 13 C 0.47 23.51 6.37 87.66 0.56 24.07 16 14 O -0.59 -36.06 13.58 -3.05 -0.04 -36.10 16 15 N -0.45 -21.97 2.85 -613.14 -1.75 -23.72 16 16 C -0.36 -19.68 7.83 84.04 0.66 -19.02 16 17 H 0.07 4.00 7.40 -2.91 -0.02 3.98 16 18 C 0.02 1.29 4.36 84.93 0.37 1.66 16 19 N -0.87 -53.63 11.67 21.66 0.25 -53.38 16 20 Si 0.96 46.57 29.60 68.60 2.03 48.60 16 21 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 22 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 23 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 24 C 0.05 1.96 4.30 44.99 0.19 2.15 16 25 C -0.18 -6.00 9.81 30.62 0.30 -5.70 16 26 C -0.18 -5.34 9.39 30.62 0.29 -5.05 16 27 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 28 H 0.08 1.96 4.37 -2.39 -0.01 1.95 16 29 H 0.09 1.72 6.57 -2.39 -0.02 1.70 16 30 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.03 1.31 7.95 -2.39 -0.02 1.30 16 32 H 0.09 1.70 8.09 -2.39 -0.02 1.68 16 33 H 0.10 1.73 6.51 -2.39 -0.02 1.72 16 34 H 0.15 2.50 8.06 -2.91 -0.02 2.47 16 35 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 36 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 37 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 38 H 0.26 15.29 8.32 -92.71 -0.77 14.52 16 39 H 0.13 4.04 6.24 -2.39 -0.01 4.02 16 40 H 0.08 3.01 6.83 -2.39 -0.02 2.99 16 41 H 0.12 3.06 8.14 -2.38 -0.02 3.04 16 42 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 43 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -75.69 352.62 6.46 -69.23 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 1.01 Total: 21.32 kcal Atomic # 6 Polarization: -27.15 SS G_CDS: 4.18 Total: -22.97 kcal Atomic # 7 Polarization: -75.60 SS G_CDS: -1.50 Total: -77.09 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -0.04 Total: -36.10 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.78 Total: -2.99 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -75.69 6.46 -69.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864999141.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.259 kcal (2) G-P(sol) polarization free energy of solvation -75.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds