Wall clock time and date at job start Tue Mar 31 2020 09:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47756 * 2 1 4 4 C 1.52997 * 109.47283 * 120.00541 * 2 1 3 5 5 C 1.52994 * 109.47019 * 294.99874 * 4 2 1 6 6 C 1.50696 * 109.47381 * 179.97438 * 5 4 2 7 7 C 1.38252 * 119.97568 * 269.72787 * 6 5 4 8 8 C 1.38192 * 120.02532 * 179.72419 * 7 6 5 9 9 C 1.38461 * 119.97580 * 0.56461 * 8 7 6 10 10 F 1.35105 * 120.02510 * 179.67996 * 9 8 7 11 11 C 1.38458 * 119.94938 * 359.70904 * 9 8 7 12 12 C 1.38198 * 119.97000 * 359.97438 * 11 9 8 13 13 C 1.50709 * 109.46888 * 240.00236 * 2 1 3 14 14 O 1.21283 * 119.99745 * 248.21424 * 13 2 1 15 15 N 1.34774 * 119.99489 * 68.21612 * 13 2 1 16 16 C 1.37104 * 119.99597 * 185.11143 * 15 13 2 17 17 H 1.08005 * 119.99982 * 324.98856 * 16 15 13 18 18 C 1.38942 * 120.00086 * 144.99215 * 16 15 13 19 19 N 1.31409 * 120.00254 * 3.97987 * 18 16 15 20 20 Si 1.86804 * 119.99872 * 183.98037 * 18 16 15 21 21 H 1.48492 * 109.47335 * 359.97438 * 20 18 16 22 22 H 1.48507 * 109.47139 * 120.00164 * 20 18 16 23 23 H 1.48501 * 109.47149 * 239.99674 * 20 18 16 24 24 C 1.46495 * 120.00574 * 5.11123 * 15 13 2 25 25 C 1.52997 * 117.49997 * 132.41671 * 24 15 13 26 26 C 1.52999 * 117.50144 * 63.75192 * 24 15 13 27 27 H 1.08997 * 109.47328 * 174.85025 * 1 2 3 28 28 H 1.08996 * 109.46713 * 294.85824 * 1 2 3 29 29 H 1.09003 * 109.46790 * 54.85058 * 1 2 3 30 30 H 1.09006 * 109.47318 * 54.99594 * 4 2 1 31 31 H 1.08998 * 109.47712 * 174.99292 * 4 2 1 32 32 H 1.09004 * 109.47310 * 299.99770 * 5 4 2 33 33 H 1.09003 * 109.47418 * 59.99945 * 5 4 2 34 34 H 1.07995 * 119.98464 * 359.97438 * 7 6 5 35 35 H 1.08009 * 120.01386 * 180.25311 * 8 7 6 36 36 H 1.08001 * 120.01642 * 179.97438 * 11 9 8 37 37 H 1.08007 * 119.98286 * 180.02562 * 12 11 9 38 38 H 0.97005 * 120.00382 * 185.00572 * 19 18 16 39 39 H 1.09004 * 115.54793 * 278.08122 * 24 15 13 40 40 H 1.08996 * 117.49912 * 359.97438 * 25 24 15 41 41 H 1.08998 * 117.50024 * 145.02403 * 25 24 15 42 42 H 1.08995 * 117.49953 * 214.98468 * 26 24 15 43 43 H 1.08998 * 117.49640 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6353 0.0687 2.4952 6 6 2.1371 -0.6420 3.7257 7 6 1.3413 -1.5826 4.3529 8 6 1.8027 -2.2391 5.4779 9 6 3.0578 -1.9462 5.9839 10 9 3.5073 -2.5828 7.0875 11 6 3.8517 -1.0000 5.3582 12 6 3.3908 -0.3494 4.2294 13 6 2.0323 -0.7104 -1.2306 14 8 2.6020 -1.7760 -1.1255 15 7 1.8485 -0.1615 -2.4477 16 6 2.2106 -0.8544 -3.5739 17 1 3.0809 -1.4939 -3.5580 18 6 1.4582 -0.7340 -4.7357 19 7 0.4461 0.1031 -4.7793 20 14 1.8852 -1.7620 -6.2358 21 1 3.0590 -2.6189 -5.9309 22 1 0.7264 -2.6184 -6.5952 23 1 2.2099 -0.8654 -7.3743 24 6 1.2617 1.1755 -2.5673 25 6 1.9614 2.1739 -3.4917 26 6 2.0462 2.3470 -1.9731 27 1 -0.3634 -1.0235 -0.0922 28 1 -0.3632 0.4320 0.9324 29 1 -0.3633 0.5917 -0.8403 30 1 1.6054 -1.7199 1.2950 31 1 3.1263 -0.7997 1.2055 32 1 2.0700 1.0673 2.4494 33 1 0.5490 0.1470 2.5390 34 1 0.3603 -1.8073 3.9610 35 1 1.1824 -2.9769 5.9654 36 1 4.8307 -0.7704 5.7522 37 1 4.0101 0.3884 3.7410 38 1 -0.1235 0.1351 -5.5638 39 1 0.1740 1.2182 -2.5115 40 1 2.8584 1.8361 -4.0105 41 1 1.3340 2.8738 -4.0436 42 1 1.4745 3.1606 -1.5267 43 1 2.9986 2.1229 -1.4928 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864999142.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:34 Heat of formation + Delta-G solvation = -53.615720 kcal Electronic energy + Delta-G solvation = -24676.291215 eV Core-core repulsion = 21021.812379 eV Total energy + Delta-G solvation = -3654.478837 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.87112 -40.89180 -40.05478 -37.94173 -36.36996 -34.82170 -33.18520 -32.53208 -32.03573 -28.93907 -27.18057 -25.84177 -23.96032 -23.79955 -22.94582 -22.66913 -21.59043 -20.07344 -18.71106 -18.60079 -17.63536 -17.34159 -16.93799 -16.64110 -16.55509 -16.11935 -15.89973 -15.67910 -15.04284 -14.80643 -14.75350 -14.40027 -14.30528 -13.95708 -13.79799 -13.48757 -13.36161 -13.01957 -12.92833 -12.56712 -12.50019 -12.37780 -12.21795 -12.18598 -12.05733 -11.90316 -11.74130 -11.44168 -11.27155 -10.98313 -10.60321 -10.10054 -10.01833 -9.48317 -9.44628 -8.25917 -5.98461 0.19563 0.32535 1.34960 1.39469 1.50924 2.12235 2.29867 2.64070 3.05235 3.07149 3.27095 3.33563 3.79674 3.81796 3.94589 4.00814 4.13954 4.26701 4.32639 4.38007 4.40736 4.45467 4.53853 4.63327 4.68376 4.79261 4.87923 4.90989 5.00189 5.04493 5.11521 5.16426 5.20270 5.20404 5.22321 5.33213 5.43996 5.47551 5.48631 5.52319 5.61741 5.70657 5.99425 6.21881 6.62721 7.25505 7.56410 8.14479 8.77204 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.025258 B = 0.002960 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.287028 B = 9457.374755 C = 9914.192028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.092 4.092 3 H 0.108 0.892 4 C -0.081 4.081 5 C -0.072 4.072 6 C -0.092 4.092 7 C -0.094 4.094 8 C -0.157 4.157 9 C 0.066 3.934 10 F -0.152 7.152 11 C -0.157 4.157 12 C -0.095 4.095 13 C 0.453 3.547 14 O -0.635 6.635 15 N -0.439 5.439 16 C -0.344 4.344 17 H 0.056 0.944 18 C 0.016 3.984 19 N -0.878 5.878 20 Si 0.970 3.030 21 H -0.281 1.281 22 H -0.275 1.275 23 H -0.269 1.269 24 C 0.115 3.885 25 C -0.148 4.148 26 C -0.185 4.185 27 H 0.034 0.966 28 H 0.101 0.899 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.270 0.730 39 H 0.100 0.900 40 H 0.060 0.940 41 H 0.095 0.905 42 H 0.130 0.870 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.375 6.262 16.321 17.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.113 4.113 3 H 0.126 0.874 4 C -0.119 4.119 5 C -0.109 4.109 6 C -0.092 4.092 7 C -0.112 4.112 8 C -0.176 4.176 9 C 0.047 3.953 10 F -0.131 7.131 11 C -0.176 4.176 12 C -0.113 4.113 13 C 0.243 3.757 14 O -0.523 6.523 15 N -0.157 5.157 16 C -0.472 4.472 17 H 0.074 0.926 18 C -0.188 4.188 19 N -0.515 5.515 20 Si 0.795 3.205 21 H -0.206 1.206 22 H -0.201 1.201 23 H -0.194 1.194 24 C 0.010 3.990 25 C -0.186 4.186 26 C -0.222 4.222 27 H 0.053 0.947 28 H 0.119 0.881 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.166 0.834 35 H 0.165 0.835 36 H 0.165 0.835 37 H 0.166 0.834 38 H 0.080 0.920 39 H 0.117 0.883 40 H 0.079 0.921 41 H 0.113 0.887 42 H 0.148 0.852 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.194 5.849 16.208 17.272 hybrid contribution 0.519 -1.201 -1.082 1.697 sum -0.674 4.648 15.126 15.839 Atomic orbital electron populations 1.21778 0.92340 1.01412 1.03716 1.21204 0.98143 1.00672 0.91295 0.87449 1.21208 1.00004 0.98450 0.92242 1.20687 1.02701 0.98618 0.88871 1.20206 0.94678 0.97371 0.96942 1.21218 1.00938 0.94892 0.94185 1.21358 0.95095 1.02547 0.98584 1.17993 0.95040 0.96188 0.86101 1.91460 1.89533 1.80851 1.51224 1.21355 1.01213 0.97399 0.97613 1.21219 0.95595 0.99623 0.94842 1.21327 0.82485 0.85899 0.85963 1.90467 1.48178 1.26377 1.87241 1.43242 1.54571 1.13558 1.04355 1.19327 1.11641 1.26141 0.90092 0.92639 1.25878 0.95251 0.96885 1.00759 1.69923 1.16794 1.33911 1.30894 0.85228 0.78052 0.78572 0.78617 1.20610 1.20060 1.19391 1.21136 0.94647 0.78817 1.04385 1.22599 1.01661 1.01879 0.92467 1.23619 1.02078 1.00603 0.95947 0.94718 0.88086 0.92457 0.93499 0.93642 0.88845 0.88601 0.83378 0.83451 0.83452 0.83401 0.92031 0.88265 0.92143 0.88671 0.85243 0.89901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 8.88 71.98 0.64 -3.30 16 2 C -0.09 -3.07 2.00 -11.54 -0.02 -3.10 16 3 H 0.11 3.11 5.91 -2.39 -0.01 3.09 16 4 C -0.08 -2.42 3.96 30.59 0.12 -2.30 16 5 C -0.07 -1.41 5.11 29.84 0.15 -1.26 16 6 C -0.09 -1.89 5.13 -19.86 -0.10 -1.99 16 7 C -0.09 -1.86 9.70 22.26 0.22 -1.64 16 8 C -0.16 -3.16 10.03 22.31 0.22 -2.94 16 9 C 0.07 1.46 7.30 22.38 0.16 1.62 16 10 F -0.15 -3.57 17.27 44.97 0.78 -2.80 16 11 C -0.16 -3.16 10.03 22.31 0.22 -2.94 16 12 C -0.09 -1.87 9.70 22.26 0.22 -1.65 16 13 C 0.45 21.93 6.82 87.66 0.60 22.52 16 14 O -0.64 -36.48 15.83 -3.04 -0.05 -36.53 16 15 N -0.44 -22.19 2.91 -613.14 -1.78 -23.97 16 16 C -0.34 -19.61 8.61 84.04 0.72 -18.89 16 17 H 0.06 3.46 7.59 -2.91 -0.02 3.44 16 18 C 0.02 0.83 5.18 84.92 0.44 1.27 16 19 N -0.88 -45.12 10.62 21.66 0.23 -44.89 16 20 Si 0.97 43.23 29.56 68.60 2.03 45.25 16 21 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 22 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 24 C 0.11 4.77 2.56 44.99 0.12 4.89 16 25 C -0.15 -5.83 8.84 30.62 0.27 -5.56 16 26 C -0.18 -5.87 8.55 30.62 0.26 -5.61 16 27 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.10 2.02 6.34 -2.39 -0.02 2.00 16 29 H 0.06 1.78 5.70 -2.39 -0.01 1.76 16 30 H 0.05 1.58 8.13 -2.38 -0.02 1.56 16 31 H 0.04 1.53 8.08 -2.39 -0.02 1.51 16 32 H 0.09 1.51 8.09 -2.39 -0.02 1.49 16 33 H 0.10 1.55 6.40 -2.39 -0.02 1.53 16 34 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 35 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 36 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 37 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 38 H 0.27 13.12 8.32 -92.70 -0.77 12.35 16 39 H 0.10 4.23 6.61 -2.38 -0.02 4.21 16 40 H 0.06 2.70 7.98 -2.39 -0.02 2.68 16 41 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 42 H 0.13 3.06 8.14 -2.39 -0.02 3.04 16 43 H 0.08 2.68 7.86 -2.39 -0.02 2.66 16 Total: -1.00 -69.05 353.56 6.45 -62.60 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 1.01 Total: 21.20 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: 4.24 Total: -20.86 kcal Atomic # 7 Polarization: -67.31 SS G_CDS: -1.55 Total: -68.86 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -0.05 Total: -36.53 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.78 Total: -2.80 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -69.05 6.45 -62.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864999142.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.987 kcal (2) G-P(sol) polarization free energy of solvation -69.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds