Wall clock time and date at job start Tue Mar 31 2020 09:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.36900 * 2 1 4 4 C 1.54265 * 110.32201 * 122.17890 * 2 1 3 5 5 C 1.54381 * 105.05781 * 118.89782 * 4 2 1 6 6 N 1.48565 * 104.59541 * 336.14625 * 5 4 2 7 7 C 1.46903 * 111.00090 * 159.03851 * 6 5 4 8 8 C 1.53005 * 109.46559 * 54.58246 * 7 6 5 9 9 C 1.53000 * 109.46826 * 180.02562 * 8 7 6 10 10 S 1.81000 * 109.47320 * 180.02562 * 9 8 7 11 11 C 1.76202 * 100.00073 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99703 * 0.02562 * 11 10 9 13 13 C 1.38792 * 119.99735 * 180.02562 * 11 10 9 14 14 N 1.31625 * 120.00420 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00083 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.46779 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47472 * 119.99488 * 15 13 11 18 18 H 1.48502 * 109.47177 * 239.99891 * 15 13 11 19 19 C 1.48563 * 104.21700 * 39.48441 * 6 5 4 20 20 H 1.08996 * 110.41013 * 79.41704 * 19 6 5 21 21 C 1.50706 * 110.40669 * 201.73587 * 19 6 5 22 22 C 1.38238 * 119.99776 * 218.54659 * 21 19 6 23 23 C 1.38234 * 119.99693 * 179.97438 * 22 21 19 24 24 C 1.38234 * 120.00240 * 0.02562 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.26327 * 24 23 22 26 26 C 1.38234 * 120.00160 * 38.52875 * 21 19 6 27 27 H 1.09000 * 109.47740 * 182.17977 * 1 2 3 28 28 H 1.09005 * 109.47565 * 302.18445 * 1 2 3 29 29 H 1.09000 * 109.47041 * 62.18256 * 1 2 3 30 30 H 1.09001 * 110.32354 * 0.02562 * 4 2 1 31 31 H 1.08998 * 110.41083 * 237.83909 * 4 2 1 32 32 H 1.08997 * 110.40894 * 217.37378 * 5 4 2 33 33 H 1.08998 * 110.51219 * 94.97913 * 5 4 2 34 34 H 1.08991 * 109.47036 * 174.58084 * 7 6 5 35 35 H 1.08994 * 109.46948 * 294.58817 * 7 6 5 36 36 H 1.08991 * 109.47314 * 299.99668 * 8 7 6 37 37 H 1.08994 * 109.47024 * 60.00618 * 8 7 6 38 38 H 1.09005 * 109.47321 * 300.00288 * 9 8 7 39 39 H 1.09000 * 109.47436 * 59.99804 * 9 8 7 40 40 H 0.97001 * 120.00457 * 180.02562 * 14 13 11 41 41 H 1.08005 * 120.00103 * 359.97438 * 22 21 19 42 42 H 1.07999 * 119.99751 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.99744 * 179.97438 * 24 23 22 44 44 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 45 45 H 1.08000 * 120.00005 * 359.97438 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0657 -0.7704 1.2244 5 6 2.8806 -1.9422 0.6359 6 7 2.3147 -2.1467 -0.7224 7 6 3.2649 -2.8594 -1.5868 8 6 3.6869 -4.1662 -0.9120 9 6 4.6770 -4.9083 -1.8119 10 16 5.1757 -6.4545 -1.0141 11 6 6.2815 -7.0848 -2.2326 12 1 6.4625 -6.5254 -3.1384 13 6 6.9198 -8.3002 -2.0281 14 7 6.6995 -8.9817 -0.9238 15 14 8.0927 -8.9681 -3.3195 16 1 8.1670 -8.0187 -4.4590 17 1 9.4428 -9.1337 -2.7237 18 1 7.6001 -10.2831 -3.8027 19 6 2.0662 -0.7710 -1.2252 20 1 2.9937 -0.3234 -1.5822 21 6 1.0363 -0.7915 -2.3252 22 6 1.1767 0.0420 -3.4191 23 6 0.2323 0.0228 -4.4284 24 6 -0.8526 -0.8296 -4.3436 25 6 -0.9961 -1.6588 -3.2470 26 6 -0.0484 -1.6442 -2.2407 27 1 -0.3634 -1.0269 0.0391 28 1 -0.3634 0.5474 0.8698 29 1 -0.3633 0.4796 -0.9089 30 1 1.2387 -1.1489 1.8251 31 1 2.7077 -0.1277 1.8268 32 1 2.7488 -2.8388 1.2415 33 1 3.9364 -1.6791 0.5722 34 1 2.7908 -3.0808 -2.5429 35 1 4.1435 -2.2360 -1.7525 36 1 4.1610 -3.9448 0.0441 37 1 2.8083 -4.7897 -0.7463 38 1 4.2033 -5.1296 -2.7684 39 1 5.5555 -4.2846 -1.9774 40 1 7.1459 -9.8309 -0.7807 41 1 2.0242 0.7083 -3.4851 42 1 0.3418 0.6743 -5.2827 43 1 -1.5906 -0.8442 -5.1320 44 1 -1.8461 -2.3216 -3.1786 45 1 -0.1577 -2.2959 -1.3865 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886546057.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:26 Heat of formation + Delta-G solvation = 12.188561 kcal Electronic energy + Delta-G solvation = -22412.906124 eV Core-core repulsion = 19327.493951 eV Total energy + Delta-G solvation = -3085.412173 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.40911 -38.29309 -34.87674 -32.42167 -32.04138 -31.55824 -30.95533 -28.49239 -26.63459 -25.58395 -24.49554 -22.75422 -22.47835 -21.66708 -20.07672 -19.56320 -17.44826 -16.83950 -16.35118 -15.74386 -15.06554 -14.96390 -14.79285 -14.53583 -14.22981 -14.09404 -13.67398 -13.51942 -13.31255 -13.09080 -12.68194 -12.60649 -12.30864 -11.94586 -11.70154 -11.67259 -11.32070 -11.14448 -11.09848 -11.06044 -10.92386 -10.83486 -10.73857 -10.56812 -10.53941 -10.29832 -9.50148 -9.05101 -8.94041 -8.70440 -8.49526 -8.27678 -6.50613 -6.21348 -3.91179 1.28217 1.37850 3.21872 3.23312 3.30941 3.55817 3.69600 3.98321 4.24062 4.43176 4.54630 4.73167 4.84850 4.89544 4.94440 5.10142 5.14709 5.18130 5.25202 5.31825 5.34597 5.39327 5.45949 5.47810 5.54703 5.60556 5.71334 5.76031 5.81329 5.85524 5.91806 5.92993 5.95132 6.02752 6.05287 6.14921 6.20832 6.34294 6.40603 6.48488 6.54229 6.61634 6.77504 6.88561 6.97409 7.08655 7.62506 8.38626 9.25149 10.86919 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.018489 B = 0.002913 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.015906 B = 9610.867548 C =10567.257621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.085 4.085 3 H 0.073 0.927 4 C -0.121 4.121 5 C 0.031 3.969 6 N -0.500 5.500 7 C 0.051 3.949 8 C -0.095 4.095 9 C -0.112 4.112 10 S -0.133 6.133 11 C -0.515 4.515 12 H 0.072 0.928 13 C 0.070 3.930 14 N -0.870 5.870 15 Si 0.918 3.082 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 C 0.101 3.899 20 H 0.058 0.942 21 C -0.064 4.064 22 C -0.120 4.120 23 C -0.126 4.126 24 C -0.125 4.125 25 C -0.128 4.128 26 C -0.083 4.083 27 H 0.066 0.934 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.075 0.925 35 H 0.033 0.967 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.266 0.734 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.105 20.781 -0.517 25.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.104 4.104 3 H 0.091 0.909 4 C -0.159 4.159 5 C -0.097 4.097 6 N -0.223 5.223 7 C -0.078 4.078 8 C -0.133 4.133 9 C -0.261 4.261 10 S 0.095 5.905 11 C -0.663 4.663 12 H 0.090 0.910 13 C -0.138 4.138 14 N -0.506 5.506 15 Si 0.744 3.256 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.007 4.007 20 H 0.076 0.924 21 C -0.065 4.065 22 C -0.138 4.138 23 C -0.144 4.144 24 C -0.143 4.143 25 C -0.146 4.146 26 C -0.101 4.101 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -14.838 19.830 0.597 24.774 hybrid contribution 2.015 0.476 -2.178 3.005 sum -12.823 20.306 -1.581 24.068 Atomic orbital electron populations 1.21999 0.94260 1.02463 1.01126 1.21827 0.96788 0.98341 0.93485 0.90852 1.22432 0.99894 0.96548 0.97056 1.23119 0.96819 0.98879 0.90891 1.65351 1.41441 1.13397 1.02149 1.22346 0.93368 0.95214 0.96893 1.21309 0.99064 0.94549 0.98427 1.23226 1.00129 1.01281 1.01473 1.84606 1.57813 1.17647 1.30402 1.22734 1.29417 1.08386 1.05779 0.90960 1.25011 0.96756 0.95822 0.96234 1.70032 1.41660 1.14201 1.24665 0.86121 0.79962 0.78784 0.80703 1.19616 1.20586 1.20555 1.21615 0.95783 0.90171 0.93156 0.92434 1.19563 0.95846 0.96496 0.94560 1.20994 0.99333 0.99524 0.93994 1.21031 0.95000 0.99602 0.98727 1.21116 0.98121 0.96839 0.98189 1.21200 0.99529 0.99388 0.94477 1.21129 0.92890 0.97477 0.98638 0.91491 0.93250 0.92500 0.90746 0.91453 0.89446 0.93585 0.90678 0.94881 0.91646 0.90808 0.92151 0.92433 0.92388 0.86603 0.86470 0.86541 0.86287 0.84969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 7.53 37.16 0.28 -0.96 16 2 C -0.09 -0.78 3.57 -89.24 -0.32 -1.10 16 3 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.12 -1.10 6.65 -25.35 -0.17 -1.27 16 5 C 0.03 0.34 5.11 -2.18 -0.01 0.33 16 6 N -0.50 -6.09 4.42 -223.50 -0.99 -7.08 16 7 C 0.05 0.72 4.92 -3.82 -0.02 0.70 16 8 C -0.09 -1.59 4.93 -26.73 -0.13 -1.72 16 9 C -0.11 -2.32 5.67 37.16 0.21 -2.10 16 10 S -0.13 -3.53 21.44 -107.50 -2.30 -5.84 16 11 C -0.51 -14.99 9.50 30.94 0.29 -14.70 16 12 H 0.07 2.05 7.80 -52.49 -0.41 1.64 16 13 C 0.07 2.03 5.49 -17.44 -0.10 1.93 16 14 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 15 Si 0.92 21.78 29.55 -169.99 -5.02 16.76 16 16 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 C 0.10 1.09 2.42 -67.22 -0.16 0.92 16 20 H 0.06 0.63 7.71 -51.93 -0.40 0.23 16 21 C -0.06 -0.70 3.62 -104.62 -0.38 -1.08 16 22 C -0.12 -1.23 9.68 -39.58 -0.38 -1.61 16 23 C -0.13 -1.21 10.05 -39.58 -0.40 -1.60 16 24 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 25 C -0.13 -1.30 10.05 -39.58 -0.40 -1.69 16 26 C -0.08 -0.91 7.11 -39.58 -0.28 -1.20 16 27 H 0.07 0.63 6.27 -51.93 -0.33 0.31 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.53 6.74 -51.93 -0.35 0.18 16 30 H 0.07 0.65 7.71 -51.93 -0.40 0.25 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 1.03 7.67 -51.93 -0.40 0.63 16 33 H 0.05 0.53 7.99 -51.93 -0.42 0.12 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.03 0.46 7.88 -51.93 -0.41 0.05 16 36 H 0.06 1.09 6.84 -51.93 -0.36 0.73 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 38 H 0.06 1.25 8.14 -51.91 -0.42 0.83 16 39 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 40 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.12 1.03 8.05 -52.48 -0.42 0.60 16 42 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 44 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 45 H 0.13 1.50 6.66 -52.49 -0.35 1.15 16 LS Contribution 367.09 15.07 5.53 5.53 Total: -1.00 -31.03 367.09 -12.01 -43.03 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -7.60 Total: -0.17 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: -2.36 Total: -26.72 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: -0.25 Total: -32.59 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -2.30 Total: -5.84 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.03 -12.01 -43.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886546057.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.222 kcal (2) G-P(sol) polarization free energy of solvation -31.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds