Wall clock time and date at job start Tue Mar 31 2020 09:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.27764 * 2 1 4 4 C 1.54600 * 110.39167 * 122.14670 * 2 1 3 5 5 C 1.54939 * 102.92133 * 97.00097 * 4 2 1 6 6 N 1.48532 * 103.22653 * 37.41153 * 5 4 2 7 7 C 1.46906 * 110.99639 * 200.27865 * 6 5 4 8 8 C 1.53000 * 109.47072 * 287.39912 * 7 6 5 9 9 C 1.52996 * 109.47188 * 180.02562 * 8 7 6 10 10 S 1.81000 * 109.47516 * 179.97438 * 9 8 7 11 11 C 1.76197 * 100.00143 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00081 * 0.02562 * 11 10 9 13 13 C 1.38800 * 119.99891 * 179.97438 * 11 10 9 14 14 N 1.31628 * 119.99891 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99828 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47434 * 59.99886 * 15 13 11 17 17 H 1.48499 * 109.47050 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46828 * 299.99402 * 15 13 11 19 19 C 1.47899 * 105.82316 * 320.79018 * 6 5 4 20 20 H 1.08991 * 109.92329 * 265.97800 * 19 6 5 21 21 C 1.50700 * 109.91299 * 144.68185 * 19 6 5 22 22 C 1.38234 * 120.00603 * 321.18406 * 21 19 6 23 23 C 1.38238 * 120.00152 * 179.74492 * 22 21 19 24 24 C 1.38231 * 119.99658 * 0.52875 * 23 22 21 25 25 C 1.38235 * 120.00565 * 359.74571 * 24 23 22 26 26 C 1.38235 * 119.99654 * 359.97438 * 25 24 23 27 27 H 1.09004 * 109.47271 * 182.09210 * 1 2 3 28 28 H 1.09000 * 109.46917 * 302.08990 * 1 2 3 29 29 H 1.08997 * 109.47365 * 62.08832 * 1 2 3 30 30 H 1.08997 * 110.72106 * 215.35599 * 4 2 1 31 31 H 1.08991 * 110.72287 * 338.46082 * 4 2 1 32 32 H 1.09000 * 110.66164 * 278.97591 * 5 4 2 33 33 H 1.09003 * 110.66561 * 155.84929 * 5 4 2 34 34 H 1.08993 * 109.47164 * 47.39766 * 7 6 5 35 35 H 1.08996 * 109.46920 * 167.39800 * 7 6 5 36 36 H 1.09002 * 109.46936 * 299.99708 * 8 7 6 37 37 H 1.08996 * 109.47340 * 60.00144 * 8 7 6 38 38 H 1.08999 * 109.47452 * 300.00348 * 9 8 7 39 39 H 1.09012 * 109.47215 * 59.99738 * 9 8 7 40 40 H 0.97000 * 119.99775 * 179.97438 * 14 13 11 41 41 H 1.08007 * 119.99614 * 359.97438 * 22 21 19 42 42 H 1.07999 * 119.99643 * 180.29640 * 23 22 21 43 43 H 1.08004 * 119.99825 * 179.76683 * 24 23 22 44 44 H 1.07997 * 120.00304 * 179.97438 * 25 24 23 45 45 H 1.07997 * 120.00332 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0687 -0.7711 1.2269 5 6 2.3619 -2.1788 0.6501 6 7 2.8828 -1.8870 -0.7100 7 6 2.7695 -3.0647 -1.5809 8 6 3.8093 -4.1076 -1.1662 9 6 3.6918 -5.3338 -2.0736 10 16 4.9224 -6.5673 -1.5835 11 6 4.5724 -7.8324 -2.7589 12 1 3.7869 -7.6912 -3.4866 13 6 5.3069 -9.0102 -2.7503 14 7 6.2652 -9.1817 -1.8644 15 14 4.9363 -10.3511 -3.9968 16 1 5.1291 -9.8181 -5.3694 17 1 5.8535 -11.4982 -3.7773 18 1 3.5311 -10.8034 -3.8342 19 6 2.0644 -0.7673 -1.2236 20 1 1.2323 -1.1546 -1.8115 21 6 2.9152 0.1444 -2.0698 22 6 4.2168 0.4204 -1.6948 23 6 4.9988 1.2525 -2.4739 24 6 4.4758 1.8173 -3.6221 25 6 3.1724 1.5458 -3.9941 26 6 2.3922 0.7091 -3.2181 27 1 -0.3634 -1.0270 0.0375 28 1 -0.3633 0.5459 0.8707 29 1 -0.3634 0.4810 -0.9081 30 1 2.9824 -0.3098 1.6016 31 1 1.3142 -0.8223 2.0119 32 1 1.4475 -2.7694 0.5934 33 1 3.1152 -2.6907 1.2490 34 1 1.7706 -3.4906 -1.4878 35 1 2.9436 -2.7694 -2.6155 36 1 4.8083 -3.6816 -1.2593 37 1 3.6352 -4.4028 -0.1315 38 1 2.6929 -5.7599 -1.9810 39 1 3.8662 -5.0382 -3.1083 40 1 6.7782 -10.0049 -1.8581 41 1 4.6238 -0.0171 -0.7952 42 1 6.0172 1.4643 -2.1835 43 1 5.0856 2.4704 -4.2287 44 1 2.7636 1.9874 -4.8909 45 1 1.3737 0.4973 -3.5084 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886546058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:28 Heat of formation + Delta-G solvation = 6.971502 kcal Electronic energy + Delta-G solvation = -22258.258344 eV Core-core repulsion = 19172.619942 eV Total energy + Delta-G solvation = -3085.638402 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.24825 -38.32876 -34.79834 -32.40983 -31.98674 -31.61375 -30.86621 -28.87233 -26.46692 -25.56427 -24.44945 -22.83131 -22.25977 -21.45347 -20.28382 -19.83688 -17.45340 -17.07573 -15.87562 -15.75658 -15.16845 -14.97906 -14.78171 -14.66340 -14.14051 -13.98928 -13.47570 -13.36771 -13.19890 -13.00383 -12.92355 -12.59003 -12.53597 -12.16388 -11.82648 -11.64391 -11.37747 -11.18269 -11.09233 -11.01978 -10.90715 -10.85090 -10.73003 -10.69966 -10.58531 -10.23798 -9.50996 -9.02490 -8.93075 -8.70404 -8.45286 -8.26547 -6.49075 -6.19892 -3.89730 1.31257 1.40837 3.23378 3.24950 3.29385 3.55633 3.72272 3.96734 4.25612 4.41004 4.50835 4.72153 4.86006 4.88444 4.96776 5.12792 5.13917 5.15835 5.19916 5.24424 5.30264 5.40694 5.46476 5.49367 5.51506 5.60943 5.67141 5.72054 5.80401 5.81158 5.84928 5.91362 5.95151 5.99019 6.06399 6.12094 6.15302 6.37466 6.43764 6.51760 6.58125 6.63832 6.81360 6.91832 7.01130 7.11400 7.62887 8.39202 9.26180 10.88282 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.016758 B = 0.002918 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.397550 B = 9592.046658 C =10427.100476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.079 0.921 4 C -0.120 4.120 5 C 0.035 3.965 6 N -0.508 5.508 7 C 0.054 3.946 8 C -0.089 4.089 9 C -0.112 4.112 10 S -0.131 6.131 11 C -0.517 4.517 12 H 0.071 0.929 13 C 0.071 3.929 14 N -0.870 5.870 15 Si 0.918 3.082 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C 0.108 3.892 20 H 0.060 0.940 21 C -0.068 4.068 22 C -0.084 4.084 23 C -0.125 4.125 24 C -0.125 4.125 25 C -0.125 4.125 26 C -0.119 4.119 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.087 0.913 34 H 0.034 0.966 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.267 0.733 41 H 0.130 0.870 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.117 0.883 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.708 23.071 2.462 25.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.098 0.902 4 C -0.158 4.158 5 C -0.093 4.093 6 N -0.231 5.231 7 C -0.076 4.076 8 C -0.128 4.128 9 C -0.262 4.262 10 S 0.097 5.903 11 C -0.665 4.665 12 H 0.089 0.911 13 C -0.138 4.138 14 N -0.506 5.506 15 Si 0.744 3.256 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.200 1.200 19 C -0.001 4.001 20 H 0.078 0.922 21 C -0.069 4.069 22 C -0.102 4.102 23 C -0.143 4.143 24 C -0.143 4.143 25 C -0.143 4.143 26 C -0.138 4.138 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.052 0.948 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.148 0.852 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.135 0.865 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.233 23.081 3.369 24.735 hybrid contribution -1.955 -1.247 -2.002 3.063 sum -10.187 21.833 1.367 24.132 Atomic orbital electron populations 1.21880 0.94626 1.01860 1.01819 1.22015 0.95540 0.99832 0.93910 0.90208 1.22581 1.01177 0.95297 0.96699 1.23262 0.98943 0.96567 0.90517 1.64615 1.50495 1.05781 1.02255 1.22341 0.98125 0.90171 0.96932 1.21191 0.99287 0.93011 0.99266 1.23236 1.02878 0.98819 1.01234 1.84612 1.44778 1.13449 1.47477 1.22658 1.22657 1.02506 1.18674 0.91084 1.25007 0.94578 0.97883 0.96298 1.70015 1.20150 1.26490 1.33922 0.86236 0.78333 0.80164 0.80871 1.19933 1.20814 1.19970 1.21335 0.93008 0.91088 0.94664 0.92175 1.19719 0.94942 0.97290 0.94917 1.21050 0.93214 0.96036 0.99943 1.21209 0.99821 0.97892 0.95418 1.21121 0.95644 1.00366 0.97212 1.21037 0.94544 0.99078 0.99672 1.20990 0.99701 0.98201 0.94909 0.92649 0.92322 0.92579 0.90719 0.90982 0.93623 0.89491 0.94761 0.91042 0.90856 0.91778 0.92466 0.92243 0.92281 0.85200 0.86266 0.86516 0.86460 0.86642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.88 37.16 0.33 -0.78 16 2 C -0.09 -0.84 3.21 -89.26 -0.29 -1.13 16 3 H 0.08 0.73 7.68 -51.93 -0.40 0.33 16 4 C -0.12 -1.06 6.62 -24.87 -0.16 -1.23 16 5 C 0.03 0.38 5.91 -1.90 -0.01 0.37 16 6 N -0.51 -6.23 4.10 -223.95 -0.92 -7.15 16 7 C 0.05 0.76 4.71 -3.82 -0.02 0.74 16 8 C -0.09 -1.51 5.31 -26.73 -0.14 -1.65 16 9 C -0.11 -2.34 5.67 37.16 0.21 -2.13 16 10 S -0.13 -3.51 21.44 -107.50 -2.30 -5.82 16 11 C -0.52 -15.09 9.50 30.94 0.29 -14.80 16 12 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 13 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 14 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 15 Si 0.92 21.81 29.55 -169.99 -5.02 16.79 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 C 0.11 1.16 2.29 -67.79 -0.16 1.00 16 20 H 0.06 0.66 7.21 -51.93 -0.37 0.29 16 21 C -0.07 -0.77 4.74 -104.62 -0.50 -1.27 16 22 C -0.08 -0.98 9.33 -39.58 -0.37 -1.35 16 23 C -0.13 -1.34 10.05 -39.58 -0.40 -1.73 16 24 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 25 C -0.13 -1.25 10.05 -39.58 -0.40 -1.64 16 26 C -0.12 -1.26 9.68 -39.58 -0.38 -1.64 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.55 7.86 -51.93 -0.41 0.14 16 32 H 0.05 0.50 7.81 -51.93 -0.41 0.10 16 33 H 0.09 0.99 7.80 -51.93 -0.41 0.59 16 34 H 0.03 0.47 7.83 -51.93 -0.41 0.07 16 35 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.06 1.09 7.37 -51.93 -0.38 0.70 16 38 H 0.06 1.18 8.14 -51.92 -0.42 0.75 16 39 H 0.06 1.24 8.14 -51.91 -0.42 0.82 16 40 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.13 1.54 7.70 -52.48 -0.40 1.13 16 42 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.12 0.93 8.06 -52.48 -0.42 0.50 16 44 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 45 H 0.12 1.04 8.05 -52.49 -0.42 0.62 16 LS Contribution 375.78 15.07 5.66 5.66 Total: -1.00 -31.30 375.78 -12.13 -43.43 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -7.80 Total: -0.39 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: -2.48 Total: -26.92 kcal Atomic # 7 Polarization: -32.57 SS G_CDS: -0.18 Total: -32.75 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -2.30 Total: -5.82 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.30 -12.13 -43.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886546058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.405 kcal (2) G-P(sol) polarization free energy of solvation -31.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds