Wall clock time and date at job start Tue Mar 31 2020 09:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.27764 * 2 1 4 4 C 1.54600 * 110.39167 * 122.14670 * 2 1 3 5 5 C 1.54939 * 102.92133 * 97.00097 * 4 2 1 6 6 N 1.48532 * 103.22653 * 37.41153 * 5 4 2 7 7 C 1.46906 * 110.99639 * 200.27865 * 6 5 4 8 8 C 1.53000 * 109.47072 * 287.39912 * 7 6 5 9 9 C 1.52996 * 109.47188 * 180.02562 * 8 7 6 10 10 S 1.81000 * 109.47516 * 179.97438 * 9 8 7 11 11 C 1.76197 * 100.00143 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00081 * 0.02562 * 11 10 9 13 13 C 1.38800 * 119.99891 * 179.97438 * 11 10 9 14 14 N 1.31628 * 119.99891 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99828 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47434 * 59.99886 * 15 13 11 17 17 H 1.48499 * 109.47050 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46828 * 299.99402 * 15 13 11 19 19 C 1.47899 * 105.82316 * 320.79018 * 6 5 4 20 20 H 1.08991 * 109.92329 * 265.97800 * 19 6 5 21 21 C 1.50700 * 109.91299 * 144.68185 * 19 6 5 22 22 C 1.38234 * 120.00603 * 321.18406 * 21 19 6 23 23 C 1.38238 * 120.00152 * 179.74492 * 22 21 19 24 24 C 1.38231 * 119.99658 * 0.52875 * 23 22 21 25 25 C 1.38235 * 120.00565 * 359.74571 * 24 23 22 26 26 C 1.38235 * 119.99654 * 359.97438 * 25 24 23 27 27 H 1.09004 * 109.47271 * 182.09210 * 1 2 3 28 28 H 1.09000 * 109.46917 * 302.08990 * 1 2 3 29 29 H 1.08997 * 109.47365 * 62.08832 * 1 2 3 30 30 H 1.08997 * 110.72106 * 215.35599 * 4 2 1 31 31 H 1.08991 * 110.72287 * 338.46082 * 4 2 1 32 32 H 1.09000 * 110.66164 * 278.97591 * 5 4 2 33 33 H 1.09003 * 110.66561 * 155.84929 * 5 4 2 34 34 H 1.08993 * 109.47164 * 47.39766 * 7 6 5 35 35 H 1.08996 * 109.46920 * 167.39800 * 7 6 5 36 36 H 1.09002 * 109.46936 * 299.99708 * 8 7 6 37 37 H 1.08996 * 109.47340 * 60.00144 * 8 7 6 38 38 H 1.08999 * 109.47452 * 300.00348 * 9 8 7 39 39 H 1.09012 * 109.47215 * 59.99738 * 9 8 7 40 40 H 0.97000 * 119.99775 * 179.97438 * 14 13 11 41 41 H 1.08007 * 119.99614 * 359.97438 * 22 21 19 42 42 H 1.07999 * 119.99643 * 180.29640 * 23 22 21 43 43 H 1.08004 * 119.99825 * 179.76683 * 24 23 22 44 44 H 1.07997 * 120.00304 * 179.97438 * 25 24 23 45 45 H 1.07997 * 120.00332 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0687 -0.7711 1.2269 5 6 2.3619 -2.1788 0.6501 6 7 2.8828 -1.8870 -0.7100 7 6 2.7695 -3.0647 -1.5809 8 6 3.8093 -4.1076 -1.1662 9 6 3.6918 -5.3338 -2.0736 10 16 4.9224 -6.5673 -1.5835 11 6 4.5724 -7.8324 -2.7589 12 1 3.7869 -7.6912 -3.4866 13 6 5.3069 -9.0102 -2.7503 14 7 6.2652 -9.1817 -1.8644 15 14 4.9363 -10.3511 -3.9968 16 1 5.1291 -9.8181 -5.3694 17 1 5.8535 -11.4982 -3.7773 18 1 3.5311 -10.8034 -3.8342 19 6 2.0644 -0.7673 -1.2236 20 1 1.2323 -1.1546 -1.8115 21 6 2.9152 0.1444 -2.0698 22 6 4.2168 0.4204 -1.6948 23 6 4.9988 1.2525 -2.4739 24 6 4.4758 1.8173 -3.6221 25 6 3.1724 1.5458 -3.9941 26 6 2.3922 0.7091 -3.2181 27 1 -0.3634 -1.0270 0.0375 28 1 -0.3633 0.5459 0.8707 29 1 -0.3634 0.4810 -0.9081 30 1 2.9824 -0.3098 1.6016 31 1 1.3142 -0.8223 2.0119 32 1 1.4475 -2.7694 0.5934 33 1 3.1152 -2.6907 1.2490 34 1 1.7706 -3.4906 -1.4878 35 1 2.9436 -2.7694 -2.6155 36 1 4.8083 -3.6816 -1.2593 37 1 3.6352 -4.4028 -0.1315 38 1 2.6929 -5.7599 -1.9810 39 1 3.8662 -5.0382 -3.1083 40 1 6.7782 -10.0049 -1.8581 41 1 4.6238 -0.0171 -0.7952 42 1 6.0172 1.4643 -2.1835 43 1 5.0856 2.4704 -4.2287 44 1 2.7636 1.9874 -4.8909 45 1 1.3737 0.4973 -3.5084 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886546058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:28 Heat of formation + Delta-G solvation = -8.261445 kcal Electronic energy + Delta-G solvation = -22258.918894 eV Core-core repulsion = 19172.619942 eV Total energy + Delta-G solvation = -3086.298952 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.09095 -39.15359 -35.96523 -34.61368 -32.83350 -32.68687 -31.66115 -29.72609 -27.93052 -27.25371 -25.55333 -23.68723 -23.19454 -22.51912 -21.28677 -20.67511 -19.54459 -17.90717 -16.92036 -16.90382 -16.62551 -16.31259 -15.99713 -15.83263 -15.45394 -14.99516 -14.76881 -14.40532 -14.14862 -14.07738 -13.83628 -13.58485 -13.45339 -13.31099 -13.10110 -13.01409 -12.87032 -12.73567 -12.51407 -12.27642 -12.18762 -11.87361 -11.73087 -11.61093 -11.51537 -11.44089 -11.32384 -11.14196 -10.33833 -9.73470 -9.50722 -9.41404 -8.67816 -8.37970 -6.14629 0.51407 0.60270 1.30236 1.40107 1.46802 1.72804 2.27577 2.84608 2.95999 3.02886 3.32036 3.62236 3.72129 3.89833 4.00877 4.08712 4.14089 4.23600 4.24191 4.33586 4.37894 4.39806 4.42606 4.49936 4.60730 4.69662 4.72508 4.75366 4.77511 4.84613 4.85842 5.02730 5.09824 5.12043 5.18718 5.20557 5.21985 5.29218 5.29990 5.38171 5.44011 5.65043 5.71731 5.72860 5.99434 6.12378 6.16941 6.21829 7.03786 8.71338 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.016758 B = 0.002918 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.397550 B = 9592.046658 C =10427.100476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.088 4.088 3 H 0.078 0.922 4 C -0.113 4.113 5 C 0.031 3.969 6 N -0.517 5.517 7 C 0.067 3.933 8 C -0.075 4.075 9 C -0.087 4.087 10 S -0.195 6.195 11 C -0.541 4.541 12 H 0.072 0.928 13 C 0.016 3.984 14 N -0.907 5.907 15 Si 0.994 3.006 16 H -0.265 1.265 17 H -0.274 1.274 18 H -0.264 1.264 19 C 0.109 3.891 20 H 0.060 0.940 21 C -0.080 4.080 22 C -0.101 4.101 23 C -0.136 4.136 24 C -0.132 4.132 25 C -0.130 4.130 26 C -0.129 4.129 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.041 0.959 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.272 0.728 41 H 0.120 0.880 42 H 0.130 0.870 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.216 23.954 1.529 26.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 H 0.097 0.903 4 C -0.151 4.151 5 C -0.096 4.096 6 N -0.240 5.240 7 C -0.063 4.063 8 C -0.114 4.114 9 C -0.237 4.237 10 S 0.033 5.967 11 C -0.689 4.689 12 H 0.090 0.910 13 C -0.189 4.189 14 N -0.544 5.544 15 Si 0.816 3.184 16 H -0.189 1.189 17 H -0.198 1.198 18 H -0.188 1.188 19 C 0.001 3.999 20 H 0.078 0.922 21 C -0.080 4.080 22 C -0.119 4.119 23 C -0.154 4.154 24 C -0.150 4.150 25 C -0.147 4.147 26 C -0.147 4.147 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.138 0.862 42 H 0.148 0.852 43 H 0.155 0.845 44 H 0.157 0.843 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.746 23.982 2.446 26.002 hybrid contribution -1.476 -1.422 -1.693 2.658 sum -11.222 22.561 0.753 25.209 Atomic orbital electron populations 1.21856 0.93366 1.01925 1.02673 1.21979 0.96476 0.99356 0.92901 0.90309 1.22558 1.01688 0.93764 0.97044 1.23306 0.98633 0.97892 0.89800 1.64551 1.51556 1.05348 1.02575 1.22088 0.97116 0.90132 0.96961 1.21044 0.99796 0.92152 0.98386 1.23151 1.00637 0.98074 1.01789 1.84628 1.48073 1.15651 1.48301 1.23015 1.23095 1.03565 1.19183 0.91008 1.26078 0.94058 1.00429 0.98378 1.70150 1.21119 1.27409 1.35692 0.85068 0.78641 0.76708 0.78014 1.18950 1.19847 1.18849 1.21368 0.92618 0.90516 0.95382 0.92198 1.19849 0.94984 0.97709 0.95492 1.21080 0.93784 0.96935 1.00147 1.21436 1.00429 0.97831 0.95737 1.21425 0.96080 1.00386 0.97097 1.21366 0.94515 0.98638 1.00225 1.21224 1.00543 0.98273 0.94689 0.92965 0.91049 0.92171 0.90845 0.89275 0.93458 0.90375 0.94092 0.91518 0.92013 0.91807 0.92030 0.92319 0.91916 0.86171 0.85162 0.84490 0.84311 0.85285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.88 71.98 0.64 -1.21 16 2 C -0.09 -1.44 3.21 -9.91 -0.03 -1.47 16 3 H 0.08 1.33 7.68 -2.39 -0.02 1.31 16 4 C -0.11 -1.84 6.62 31.80 0.21 -1.63 16 5 C 0.03 0.65 5.91 86.65 0.51 1.17 16 6 N -0.52 -12.39 4.10 -862.43 -3.54 -15.92 16 7 C 0.07 1.85 4.71 86.30 0.41 2.25 16 8 C -0.07 -2.55 5.31 30.59 0.16 -2.39 16 9 C -0.09 -3.64 5.67 71.98 0.41 -3.23 16 10 S -0.20 -10.69 21.44 -56.49 -1.21 -11.90 16 11 C -0.54 -31.95 9.50 67.95 0.65 -31.30 16 12 H 0.07 4.08 7.80 -2.91 -0.02 4.06 16 13 C 0.02 0.90 5.49 84.86 0.47 1.36 16 14 N -0.91 -55.63 13.22 21.65 0.29 -55.34 16 15 Si 0.99 44.49 29.55 68.60 2.03 46.52 16 16 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 17 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 18 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 19 C 0.11 2.24 2.29 44.31 0.10 2.34 16 20 H 0.06 1.23 7.21 -2.39 -0.02 1.21 16 21 C -0.08 -1.74 4.74 -19.86 -0.09 -1.84 16 22 C -0.10 -2.33 9.33 22.27 0.21 -2.12 16 23 C -0.14 -2.82 10.05 22.27 0.22 -2.60 16 24 C -0.13 -2.44 10.05 22.27 0.22 -2.22 16 25 C -0.13 -2.34 10.05 22.27 0.22 -2.12 16 26 C -0.13 -2.53 9.68 22.27 0.22 -2.31 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 31 H 0.09 1.17 7.86 -2.39 -0.02 1.15 16 32 H 0.05 0.98 7.81 -2.39 -0.02 0.96 16 33 H 0.08 1.77 7.80 -2.39 -0.02 1.75 16 34 H 0.04 1.08 7.83 -2.39 -0.02 1.06 16 35 H 0.07 1.91 8.08 -2.39 -0.02 1.89 16 36 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.06 2.18 7.37 -2.39 -0.02 2.16 16 38 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.27 15.46 8.31 -92.71 -0.77 14.68 16 41 H 0.12 2.91 7.70 -2.91 -0.02 2.88 16 42 H 0.13 2.27 8.06 -2.91 -0.02 2.24 16 43 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 44 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 45 H 0.13 2.09 8.05 -2.91 -0.02 2.07 16 Total: -1.00 -67.60 375.78 3.02 -64.58 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.93 Total: 19.38 kcal Atomic # 6 Polarization: -51.84 SS G_CDS: 4.52 Total: -47.32 kcal Atomic # 7 Polarization: -68.01 SS G_CDS: -3.25 Total: -71.26 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: -10.69 SS G_CDS: -1.21 Total: -11.90 kcal Total: -67.60 3.02 -64.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886546058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.323 kcal (2) G-P(sol) polarization free energy of solvation -67.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds