Wall clock time and date at job start Tue Mar 31 2020 08:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34234 * 117.00000 * 2 1 4 4 O 1.20821 * 119.99648 * 359.97438 * 3 2 1 5 5 C 1.50691 * 119.99976 * 179.97438 * 3 2 1 6 6 H 1.09003 * 115.56404 * 325.68617 * 5 3 2 7 7 C 1.53002 * 117.49820 * 179.97438 * 5 3 2 8 8 H 1.09007 * 117.49929 * 144.99628 * 7 5 3 9 9 C 1.53004 * 117.49764 * 0.02562 * 7 5 3 10 10 N 1.46896 * 109.46818 * 198.75199 * 9 7 5 11 11 C 1.46901 * 110.99860 * 142.05890 * 10 9 7 12 12 C 1.50699 * 109.47215 * 190.00183 * 11 10 9 13 13 H 1.07999 * 120.00174 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99872 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00134 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99942 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46983 * 90.00277 * 16 14 12 18 18 H 1.48504 * 109.47396 * 210.00081 * 16 14 12 19 19 H 1.48499 * 109.47257 * 330.00269 * 16 14 12 20 20 C 1.46905 * 111.00222 * 266.00999 * 10 9 7 21 21 C 1.52994 * 109.46940 * 72.20200 * 20 10 9 22 22 C 1.52999 * 109.47527 * 68.53613 * 21 20 10 23 23 C 1.52998 * 109.47287 * 188.53817 * 21 20 10 24 24 C 1.52998 * 60.03472 * 252.50014 * 7 5 3 25 25 F 1.39895 * 117.50125 * 107.50228 * 24 7 5 26 26 F 1.39903 * 117.49613 * 252.49781 * 24 7 5 27 27 H 1.08997 * 109.46891 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47382 * 300.00512 * 1 2 3 29 29 H 1.09004 * 109.46715 * 60.00566 * 1 2 3 30 30 H 1.09001 * 109.46909 * 78.75963 * 9 7 5 31 31 H 1.08997 * 109.46869 * 318.75363 * 9 7 5 32 32 H 1.08999 * 109.46924 * 309.99973 * 11 10 9 33 33 H 1.09000 * 109.47160 * 69.99635 * 11 10 9 34 34 H 0.97008 * 119.99656 * 180.02562 * 15 14 12 35 35 H 1.09006 * 109.46838 * 192.19807 * 20 10 9 36 36 H 1.08999 * 109.46723 * 312.19655 * 20 10 9 37 37 H 1.09005 * 109.47211 * 308.53206 * 21 20 10 38 38 H 1.08999 * 109.47257 * 299.99838 * 22 21 20 39 39 H 1.08995 * 109.47292 * 59.99691 * 22 21 20 40 40 H 1.08997 * 109.47520 * 180.02562 * 22 21 20 41 41 H 1.08998 * 109.47029 * 59.99424 * 23 21 20 42 42 H 1.09003 * 109.47690 * 179.97438 * 23 21 20 43 43 H 1.09006 * 109.46999 * 299.99683 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0783 0.4885 0.5553 7 6 4.2007 2.6672 -0.0001 8 1 5.1299 2.7971 0.5549 9 6 3.2587 3.8728 -0.0006 10 7 3.9906 5.0658 -0.4464 11 6 3.1425 5.9195 -1.2890 12 6 3.9858 6.9947 -1.9243 13 1 5.0458 7.0397 -1.7221 14 6 3.4042 7.9210 -2.7638 15 7 2.1134 7.8666 -3.0097 16 14 4.4495 9.2543 -3.5508 17 1 4.9713 8.7695 -4.8539 18 1 3.6217 10.4677 -3.7697 19 1 5.5863 9.5856 -2.6547 20 6 4.5204 5.8172 0.6994 21 6 5.6903 5.0483 1.3165 22 6 6.8730 5.0539 0.3460 23 6 6.1044 5.7168 2.6290 24 6 4.2471 1.8057 -1.2636 25 9 3.4249 2.1806 -2.3316 26 9 5.4788 1.2450 -1.6183 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 2.8771 4.0362 1.0073 31 1 2.4261 3.6830 -0.6781 32 1 2.6779 5.3146 -2.0676 33 1 2.3678 6.3801 -0.6760 34 1 1.7043 8.5181 -3.6006 35 1 4.8650 6.7956 0.3643 36 1 3.7353 5.9442 1.4448 37 1 5.3861 4.0201 1.5128 38 1 6.5781 4.5775 -0.5890 39 1 7.1771 6.0820 0.1498 40 1 7.7063 4.5057 0.7855 41 1 5.2618 5.7129 3.3204 42 1 6.9376 5.1688 3.0689 43 1 6.4085 6.7451 2.4328 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893883243.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:43 Heat of formation + Delta-G solvation = -145.187297 kcal Electronic energy + Delta-G solvation = -26884.684038 eV Core-core repulsion = 22795.465135 eV Total energy + Delta-G solvation = -4089.218903 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.57694 -47.23769 -40.70576 -38.16737 -36.78608 -35.49627 -33.94273 -32.24106 -28.62928 -27.61230 -26.72935 -26.32974 -24.53654 -23.87361 -21.50984 -20.67292 -20.34066 -19.47285 -18.14479 -17.39980 -17.05893 -16.42149 -16.31641 -16.03331 -15.37332 -15.02600 -14.66216 -14.27184 -13.84062 -13.80357 -13.67844 -13.43431 -13.33125 -13.30482 -13.08937 -12.73514 -12.48205 -12.24498 -11.94524 -11.80381 -11.61380 -11.46386 -11.13795 -11.01587 -10.93008 -10.82016 -10.58330 -10.50781 -10.32488 -10.06064 -9.98148 -9.71445 -9.52982 -9.13134 -8.38207 -7.21942 -5.96587 -3.97554 1.73840 2.37349 3.10768 3.22270 3.35787 3.41636 3.44623 3.94322 4.38649 4.48231 4.61040 4.68079 4.95700 5.04431 5.06159 5.23913 5.34511 5.38626 5.41548 5.43761 5.47698 5.62893 5.77465 5.94973 6.00388 6.05432 6.12913 6.19958 6.27286 6.41896 6.52198 6.56872 6.63323 6.88272 6.93163 7.37353 7.42739 7.60945 7.85703 8.15752 8.26570 8.59398 9.10117 9.66051 11.14247 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.012522 B = 0.005046 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.470387 B = 5547.170463 C = 6456.343272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.356 6.356 3 C 0.490 3.510 4 O -0.474 6.474 5 C -0.183 4.183 6 H 0.157 0.843 7 C -0.093 4.093 8 H 0.148 0.852 9 C 0.071 3.929 10 N -0.533 5.533 11 C 0.198 3.802 12 C -0.504 4.504 13 H 0.064 0.936 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.896 3.104 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.274 1.274 20 C 0.065 3.935 21 C -0.099 4.099 22 C -0.137 4.137 23 C -0.145 4.145 24 C 0.241 3.759 25 F -0.143 7.143 26 F -0.153 7.153 27 H 0.102 0.898 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.099 0.901 32 H 0.031 0.969 33 H -0.009 1.009 34 H 0.260 0.740 35 H 0.087 0.913 36 H 0.020 0.980 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.037 0.963 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.473 -15.314 9.915 18.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.273 6.273 3 C 0.331 3.669 4 O -0.360 6.360 5 C -0.204 4.204 6 H 0.175 0.825 7 C -0.112 4.112 8 H 0.165 0.835 9 C -0.058 4.058 10 N -0.257 5.257 11 C 0.073 3.927 12 C -0.543 4.543 13 H 0.082 0.918 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.724 3.276 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.199 1.199 20 C -0.063 4.063 21 C -0.118 4.118 22 C -0.194 4.194 23 C -0.203 4.203 24 C 0.203 3.797 25 F -0.123 7.123 26 F -0.133 7.133 27 H 0.120 0.880 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.117 0.883 32 H 0.050 0.950 33 H 0.009 0.991 34 H 0.070 0.930 35 H 0.105 0.895 36 H 0.038 0.962 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.476 -15.052 9.459 17.949 hybrid contribution -0.345 0.813 -0.220 0.911 sum 2.130 -14.238 9.239 17.106 Atomic orbital electron populations 1.23319 0.75726 1.03728 1.03028 1.86456 1.23786 1.32935 1.84132 1.22171 0.89671 0.81724 0.73293 1.90742 1.66445 1.35452 1.43318 1.23488 0.90562 1.03492 1.02830 0.82528 1.24314 1.02206 0.90223 0.94478 0.83512 1.21984 0.93780 0.88832 1.01156 1.61867 1.38204 1.07276 1.18350 1.19732 0.90964 0.91042 0.90944 1.21160 0.95131 1.11031 1.26972 0.91773 1.24977 0.94915 0.97969 0.96718 1.69972 1.10048 1.36529 1.37208 0.86540 0.80122 0.81192 0.79783 1.20690 1.21432 1.19886 1.22194 0.94754 0.98252 0.91146 1.21327 0.96599 0.99268 0.94583 1.21715 0.96064 1.01723 0.99907 1.21822 1.00456 1.00889 0.97136 1.19634 0.78595 1.00771 0.80669 1.93100 1.70424 1.91207 1.57552 1.93044 1.41456 1.85620 1.93224 0.88007 0.91652 0.91468 0.93072 0.88329 0.95050 0.99147 0.93015 0.89494 0.96234 0.91815 0.91257 0.92981 0.94393 0.93281 0.93258 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.28 10.57 -39.27 -0.41 -4.69 16 3 C 0.49 6.88 7.35 36.00 0.26 7.14 16 4 O -0.47 -8.07 12.82 -18.75 -0.24 -8.31 16 5 C -0.18 -2.28 6.29 -91.73 -0.58 -2.85 16 6 H 0.16 1.35 8.14 -51.93 -0.42 0.93 16 7 C -0.09 -1.36 5.38 -90.62 -0.49 -1.84 16 8 H 0.15 1.88 5.43 -51.93 -0.28 1.60 16 9 C 0.07 1.31 3.53 -3.82 -0.01 1.29 16 10 N -0.53 -11.24 3.96 -236.07 -0.93 -12.17 16 11 C 0.20 5.22 4.60 -4.98 -0.02 5.19 16 12 C -0.50 -14.14 8.28 -34.44 -0.29 -14.43 16 13 H 0.06 1.77 7.26 -52.49 -0.38 1.39 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 16 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 20 C 0.06 1.22 4.11 -3.82 -0.02 1.20 16 21 C -0.10 -1.46 2.58 -90.62 -0.23 -1.70 16 22 C -0.14 -2.06 9.07 37.16 0.34 -1.72 16 23 C -0.15 -1.83 9.18 37.16 0.34 -1.49 16 24 C 0.24 3.71 5.13 -26.69 -0.14 3.57 16 25 F -0.14 -2.68 16.28 2.25 0.04 -2.64 16 26 F -0.15 -2.27 17.60 2.25 0.04 -2.23 16 27 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.58 8.13 -51.93 -0.42 0.15 16 29 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 30 H 0.05 0.91 7.46 -51.93 -0.39 0.52 16 31 H 0.10 2.07 4.60 -51.93 -0.24 1.83 16 32 H 0.03 0.91 7.80 -51.93 -0.41 0.51 16 33 H -0.01 -0.26 8.12 -51.93 -0.42 -0.69 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.09 1.84 6.57 -51.93 -0.34 1.49 16 36 H 0.02 0.37 7.71 -51.93 -0.40 -0.03 16 37 H 0.06 0.87 4.81 -51.93 -0.25 0.62 16 38 H 0.07 1.18 7.87 -51.93 -0.41 0.77 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 356.09 15.07 5.37 5.37 Total: -1.00 -31.72 356.09 -6.75 -38.46 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -6.45 Total: -1.51 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 0.14 Total: -2.74 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: -0.20 Total: -38.57 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -0.66 Total: -13.00 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 0.08 Total: -4.87 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.72 -6.75 -38.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893883243.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.725 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds