Wall clock time and date at job start Tue Mar 31 2020 08:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34234 * 117.00000 * 2 1 4 4 O 1.20821 * 119.99648 * 359.97438 * 3 2 1 5 5 C 1.50691 * 119.99976 * 179.97438 * 3 2 1 6 6 H 1.09003 * 115.56404 * 325.68617 * 5 3 2 7 7 C 1.53002 * 117.49820 * 179.97438 * 5 3 2 8 8 H 1.09007 * 117.49929 * 144.99628 * 7 5 3 9 9 C 1.53004 * 117.49764 * 0.02562 * 7 5 3 10 10 N 1.46896 * 109.46818 * 198.75199 * 9 7 5 11 11 C 1.46901 * 110.99860 * 142.05890 * 10 9 7 12 12 C 1.50699 * 109.47215 * 190.00183 * 11 10 9 13 13 H 1.07999 * 120.00174 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99872 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00134 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99942 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46983 * 90.00277 * 16 14 12 18 18 H 1.48504 * 109.47396 * 210.00081 * 16 14 12 19 19 H 1.48499 * 109.47257 * 330.00269 * 16 14 12 20 20 C 1.46905 * 111.00222 * 266.00999 * 10 9 7 21 21 C 1.52994 * 109.46940 * 72.20200 * 20 10 9 22 22 C 1.52999 * 109.47527 * 68.53613 * 21 20 10 23 23 C 1.52998 * 109.47287 * 188.53817 * 21 20 10 24 24 C 1.52998 * 60.03472 * 252.50014 * 7 5 3 25 25 F 1.39895 * 117.50125 * 107.50228 * 24 7 5 26 26 F 1.39903 * 117.49613 * 252.49781 * 24 7 5 27 27 H 1.08997 * 109.46891 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47382 * 300.00512 * 1 2 3 29 29 H 1.09004 * 109.46715 * 60.00566 * 1 2 3 30 30 H 1.09001 * 109.46909 * 78.75963 * 9 7 5 31 31 H 1.08997 * 109.46869 * 318.75363 * 9 7 5 32 32 H 1.08999 * 109.46924 * 309.99973 * 11 10 9 33 33 H 1.09000 * 109.47160 * 69.99635 * 11 10 9 34 34 H 0.97008 * 119.99656 * 180.02562 * 15 14 12 35 35 H 1.09006 * 109.46838 * 192.19807 * 20 10 9 36 36 H 1.08999 * 109.46723 * 312.19655 * 20 10 9 37 37 H 1.09005 * 109.47211 * 308.53206 * 21 20 10 38 38 H 1.08999 * 109.47257 * 299.99838 * 22 21 20 39 39 H 1.08995 * 109.47292 * 59.99691 * 22 21 20 40 40 H 1.08997 * 109.47520 * 180.02562 * 22 21 20 41 41 H 1.08998 * 109.47029 * 59.99424 * 23 21 20 42 42 H 1.09003 * 109.47690 * 179.97438 * 23 21 20 43 43 H 1.09006 * 109.46999 * 299.99683 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0783 0.4885 0.5553 7 6 4.2007 2.6672 -0.0001 8 1 5.1299 2.7971 0.5549 9 6 3.2587 3.8728 -0.0006 10 7 3.9906 5.0658 -0.4464 11 6 3.1425 5.9195 -1.2890 12 6 3.9858 6.9947 -1.9243 13 1 5.0458 7.0397 -1.7221 14 6 3.4042 7.9210 -2.7638 15 7 2.1134 7.8666 -3.0097 16 14 4.4495 9.2543 -3.5508 17 1 4.9713 8.7695 -4.8539 18 1 3.6217 10.4677 -3.7697 19 1 5.5863 9.5856 -2.6547 20 6 4.5204 5.8172 0.6994 21 6 5.6903 5.0483 1.3165 22 6 6.8730 5.0539 0.3460 23 6 6.1044 5.7168 2.6290 24 6 4.2471 1.8057 -1.2636 25 9 3.4249 2.1806 -2.3316 26 9 5.4788 1.2450 -1.6183 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 2.8771 4.0362 1.0073 31 1 2.4261 3.6830 -0.6781 32 1 2.6779 5.3146 -2.0676 33 1 2.3678 6.3801 -0.6760 34 1 1.7043 8.5181 -3.6006 35 1 4.8650 6.7956 0.3643 36 1 3.7353 5.9442 1.4448 37 1 5.3861 4.0201 1.5128 38 1 6.5781 4.5775 -0.5890 39 1 7.1771 6.0820 0.1498 40 1 7.7063 4.5057 0.7855 41 1 5.2618 5.7129 3.3204 42 1 6.9376 5.1688 3.0689 43 1 6.4085 6.7451 2.4328 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893883243.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:42 Heat of formation + Delta-G solvation = -164.484550 kcal Electronic energy + Delta-G solvation = -26885.520830 eV Core-core repulsion = 22795.465135 eV Total energy + Delta-G solvation = -4090.055695 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.82428 -48.50467 -41.81962 -39.56528 -37.97339 -36.71660 -35.57364 -34.23499 -30.00745 -29.06068 -27.84240 -27.81547 -26.03826 -25.29296 -23.10484 -22.06501 -21.59745 -20.77461 -19.33118 -18.65835 -18.42164 -18.09327 -17.53943 -17.34661 -16.69817 -16.46845 -16.32965 -15.83252 -15.25172 -15.10766 -14.93462 -14.72987 -14.66059 -14.38119 -14.31124 -14.27946 -13.85777 -13.59384 -13.53015 -13.12025 -12.96344 -12.86089 -12.71568 -12.63063 -12.41568 -12.20133 -11.96897 -11.88470 -11.71122 -11.61323 -11.38202 -11.26110 -11.10861 -10.83313 -10.60889 -9.00314 -8.19231 -6.29192 0.59803 1.38518 1.39595 1.41806 1.52402 1.96710 2.05281 2.39844 2.75213 3.13231 3.29537 3.39953 3.50641 3.75878 4.02220 4.17172 4.22969 4.25952 4.28997 4.30074 4.42048 4.46576 4.60334 4.67287 4.72948 4.86307 4.94066 4.96386 5.06306 5.15158 5.19540 5.24151 5.26509 5.34478 5.39576 5.60571 5.66610 5.70208 6.06461 6.37302 6.51461 6.65302 6.87979 7.40163 8.92292 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.012522 B = 0.005046 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.470387 B = 5547.170463 C = 6456.343272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.351 6.351 3 C 0.486 3.514 4 O -0.512 6.512 5 C -0.143 4.143 6 H 0.210 0.790 7 C -0.096 4.096 8 H 0.175 0.825 9 C 0.075 3.925 10 N -0.533 5.533 11 C 0.216 3.784 12 C -0.515 4.515 13 H 0.067 0.933 14 C -0.001 4.001 15 N -0.938 5.938 16 Si 0.969 3.031 17 H -0.275 1.275 18 H -0.283 1.283 19 H -0.260 1.260 20 C 0.065 3.935 21 C -0.090 4.090 22 C -0.133 4.133 23 C -0.141 4.141 24 C 0.216 3.784 25 F -0.172 7.172 26 F -0.148 7.148 27 H 0.140 0.860 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.068 0.932 32 H -0.007 1.007 33 H -0.044 1.044 34 H 0.263 0.737 35 H 0.058 0.942 36 H 0.016 0.984 37 H 0.083 0.917 38 H 0.045 0.955 39 H 0.038 0.962 40 H 0.070 0.930 41 H 0.054 0.946 42 H 0.076 0.924 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.673 -16.869 11.627 21.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.267 6.267 3 C 0.329 3.671 4 O -0.400 6.400 5 C -0.163 4.163 6 H 0.227 0.773 7 C -0.115 4.115 8 H 0.192 0.808 9 C -0.053 4.053 10 N -0.256 5.256 11 C 0.090 3.910 12 C -0.553 4.553 13 H 0.085 0.915 14 C -0.199 4.199 15 N -0.579 5.579 16 Si 0.793 3.207 17 H -0.201 1.201 18 H -0.209 1.209 19 H -0.184 1.184 20 C -0.063 4.063 21 C -0.109 4.109 22 C -0.191 4.191 23 C -0.198 4.198 24 C 0.179 3.821 25 F -0.152 7.152 26 F -0.128 7.128 27 H 0.158 0.842 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.011 0.989 33 H -0.026 1.026 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.034 0.966 37 H 0.101 0.899 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.692 -16.645 11.192 20.600 hybrid contribution -1.135 1.228 -0.735 1.827 sum 3.557 -15.417 10.457 18.965 Atomic orbital electron populations 1.23630 0.74159 1.06118 1.02587 1.86453 1.25297 1.31533 1.83392 1.22540 0.90414 0.81775 0.72362 1.90753 1.67419 1.36836 1.45022 1.23624 0.89726 1.02974 1.00013 0.77315 1.24179 1.02668 0.89746 0.94874 0.80828 1.21857 0.93909 0.89172 1.00339 1.61861 1.37055 1.07355 1.19341 1.19302 0.90576 0.90786 0.90338 1.21450 0.95332 1.11506 1.27046 0.91467 1.25944 0.96151 1.00535 0.97238 1.70122 1.12042 1.37666 1.38039 0.85393 0.78562 0.77888 0.78843 1.20070 1.20865 1.18442 1.22250 0.96258 0.97595 0.90148 1.21281 0.94477 0.99784 0.95350 1.21677 0.97124 1.01155 0.99111 1.21787 1.01659 1.00615 0.95773 1.19933 0.79132 1.02536 0.80470 1.93040 1.71365 1.91737 1.59102 1.93049 1.41057 1.85483 1.93228 0.84179 0.91377 0.92738 0.92557 0.91420 0.98930 1.02626 0.92843 0.92349 0.96570 0.89868 0.93586 0.94316 0.91095 0.92726 0.90502 0.93414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.56 113.37 1.20 1.67 16 2 O -0.35 -7.75 10.57 -51.45 -0.54 -8.30 16 3 C 0.49 13.15 7.35 71.23 0.52 13.67 16 4 O -0.51 -17.87 12.82 21.98 0.28 -17.59 16 5 C -0.14 -3.20 6.29 -11.51 -0.07 -3.27 16 6 H 0.21 2.47 8.14 -2.39 -0.02 2.45 16 7 C -0.10 -2.66 5.38 -10.79 -0.06 -2.71 16 8 H 0.17 3.85 5.43 -2.38 -0.01 3.83 16 9 C 0.08 2.84 3.53 86.31 0.30 3.15 16 10 N -0.53 -23.33 3.96 -900.79 -3.57 -26.89 16 11 C 0.22 12.19 4.60 85.56 0.39 12.58 16 12 C -0.52 -30.07 8.28 25.60 0.21 -29.85 16 13 H 0.07 3.80 7.26 -2.91 -0.02 3.78 16 14 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 15 N -0.94 -58.99 13.29 21.45 0.28 -58.71 16 16 Si 0.97 45.69 29.54 68.60 2.03 47.72 16 17 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 18 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 20 C 0.07 2.50 4.11 86.30 0.35 2.85 16 21 C -0.09 -2.49 2.58 -10.80 -0.03 -2.51 16 22 C -0.13 -3.74 9.07 71.98 0.65 -3.09 16 23 C -0.14 -3.13 9.18 71.98 0.66 -2.47 16 24 C 0.22 6.47 5.13 30.62 0.16 6.63 16 25 F -0.17 -6.72 16.28 44.97 0.73 -5.99 16 26 F -0.15 -4.10 17.60 44.97 0.79 -3.31 16 27 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.07 1.14 8.13 -2.39 -0.02 1.12 16 29 H 0.05 1.08 8.13 -2.38 -0.02 1.06 16 30 H 0.06 2.04 7.46 -2.39 -0.02 2.02 16 31 H 0.07 3.03 4.60 -2.39 -0.01 3.02 16 32 H -0.01 -0.47 7.80 -2.39 -0.02 -0.49 16 33 H -0.04 -2.71 8.12 -2.39 -0.02 -2.73 16 34 H 0.26 15.53 8.31 -92.70 -0.77 14.76 16 35 H 0.06 2.55 6.57 -2.38 -0.02 2.53 16 36 H 0.02 0.62 7.71 -2.39 -0.02 0.60 16 37 H 0.08 1.98 4.81 -2.38 -0.01 1.97 16 38 H 0.04 1.50 7.87 -2.39 -0.02 1.48 16 39 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 43 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 Total: -1.00 -74.13 356.09 5.78 -68.35 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: 1.01 Total: 7.68 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: 4.76 Total: -2.96 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -3.28 Total: -85.60 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.26 Total: -25.89 kcal Atomic # 9 Polarization: -10.82 SS G_CDS: 1.52 Total: -9.30 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -74.13 5.78 -68.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893883243.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.134 kcal (2) G-P(sol) polarization free energy of solvation -74.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds