Wall clock time and date at job start Tue Mar 31 2020 08:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 117.00244 * 2 1 4 4 O 1.20822 * 119.99964 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99929 * 179.97438 * 3 2 1 6 6 H 1.09003 * 115.54886 * 34.33337 * 5 3 2 7 7 C 1.52994 * 117.49949 * 180.02562 * 5 3 2 8 8 H 1.08998 * 117.49804 * 359.97438 * 7 5 3 9 9 C 1.53007 * 117.49998 * 214.98169 * 7 5 3 10 10 N 1.46898 * 109.46962 * 176.33426 * 9 7 5 11 11 C 1.46905 * 110.99855 * 75.66815 * 10 9 7 12 12 C 1.50703 * 109.47077 * 189.99549 * 11 10 9 13 13 H 1.07996 * 120.00190 * 0.02562 * 12 11 10 14 14 C 1.37869 * 119.99868 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00412 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00077 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.46931 * 90.00237 * 16 14 12 18 18 H 1.48507 * 109.47337 * 210.00137 * 16 14 12 19 19 H 1.48501 * 109.47134 * 330.00329 * 16 14 12 20 20 C 1.46900 * 110.99977 * 199.61572 * 10 9 7 21 21 C 1.52999 * 109.46766 * 75.73083 * 20 10 9 22 22 C 1.52998 * 109.47271 * 64.43263 * 21 20 10 23 23 C 1.52996 * 109.47316 * 184.43236 * 21 20 10 24 24 C 1.52997 * 60.00273 * 107.49308 * 7 5 3 25 25 F 1.39898 * 117.49603 * 252.51328 * 24 7 5 26 26 F 1.39897 * 117.49923 * 107.49230 * 24 7 5 27 27 H 1.09002 * 109.47337 * 300.00189 * 1 2 3 28 28 H 1.09001 * 109.46925 * 59.99718 * 1 2 3 29 29 H 1.08997 * 109.47326 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47081 * 296.33489 * 9 7 5 31 31 H 1.08996 * 109.46724 * 56.33950 * 9 7 5 32 32 H 1.09003 * 109.47042 * 309.99787 * 11 10 9 33 33 H 1.08996 * 109.46978 * 69.99492 * 11 10 9 34 34 H 0.97001 * 120.00598 * 179.97438 * 15 14 12 35 35 H 1.08998 * 109.47427 * 195.72699 * 20 10 9 36 36 H 1.08995 * 109.47272 * 315.73167 * 20 10 9 37 37 H 1.09004 * 109.47344 * 304.43453 * 21 20 10 38 38 H 1.08998 * 109.47370 * 179.97438 * 22 21 20 39 39 H 1.08999 * 109.47254 * 300.00033 * 22 21 20 40 40 H 1.09002 * 109.47299 * 59.99889 * 22 21 20 41 41 H 1.09005 * 109.47472 * 59.99976 * 23 21 20 42 42 H 1.08998 * 109.47453 * 180.02562 * 23 21 20 43 43 H 1.09004 * 109.47092 * 300.00372 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0785 0.4882 -0.5537 7 6 4.2008 2.6669 0.0012 8 1 3.5298 3.5259 0.0007 9 6 5.5060 2.8488 -0.7764 10 7 5.9100 4.2604 -0.7316 11 6 6.4740 4.6052 0.5804 12 6 6.6481 6.0991 0.6755 13 1 6.3674 6.7294 -0.1553 14 6 7.1646 6.6612 1.8235 15 7 7.5060 5.8937 2.8355 16 14 7.3797 8.5130 1.9418 17 1 6.1439 9.1203 2.4978 18 1 8.5272 8.8222 2.8324 19 1 7.6391 9.0686 0.5892 20 6 6.8577 4.5713 -1.8101 21 6 6.1038 4.6740 -3.1375 22 6 5.1327 5.8550 -3.0825 23 6 7.1029 4.8879 -4.2762 24 6 4.2456 1.8054 1.2647 25 9 3.4220 2.1804 2.3316 26 9 5.4766 1.2442 1.6207 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 6.2854 2.2334 -0.3271 31 1 5.3565 2.5465 -1.8129 32 1 5.7986 4.2672 1.3664 33 1 7.4420 4.1183 0.6990 34 1 7.8698 6.2891 3.6431 35 1 7.3510 5.5199 -1.5981 36 1 7.6046 3.7803 -1.8766 37 1 5.5467 3.7533 -3.3111 38 1 4.5960 5.9284 -4.0283 39 1 4.4209 5.7026 -2.2712 40 1 5.6898 6.7757 -2.9089 41 1 7.7948 4.0465 -4.3155 42 1 6.5659 4.9615 -5.2218 43 1 7.6601 5.8086 -4.1026 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893883244.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:45 Heat of formation + Delta-G solvation = -156.838669 kcal Electronic energy + Delta-G solvation = -26353.694164 eV Core-core repulsion = 22263.970020 eV Total energy + Delta-G solvation = -4089.724144 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.55577 -47.22047 -40.65031 -38.06221 -36.89590 -35.74705 -33.86568 -32.29251 -28.67440 -27.67330 -26.70877 -26.54575 -24.36288 -23.81105 -21.54607 -20.79311 -20.27590 -19.34445 -18.21685 -17.28785 -17.18926 -16.49741 -16.39592 -15.96221 -15.43503 -15.16715 -14.61188 -14.32575 -13.90946 -13.83159 -13.72485 -13.46078 -13.39865 -13.35203 -13.10066 -12.56991 -12.32836 -12.28235 -12.02285 -11.82700 -11.61695 -11.39443 -11.18891 -11.01638 -10.98455 -10.77487 -10.77221 -10.62952 -10.48587 -10.23789 -9.97606 -9.91119 -9.59921 -9.16558 -8.41951 -7.33738 -6.00420 -4.01998 1.71779 2.32131 3.11541 3.25871 3.33963 3.40196 3.42744 4.02607 4.32382 4.45234 4.62947 4.72291 4.89486 4.96631 4.98423 5.26978 5.30198 5.35539 5.36452 5.43803 5.51959 5.63318 5.74504 5.83109 5.93927 6.06123 6.11913 6.14900 6.27964 6.29941 6.42607 6.50024 6.57091 6.87569 6.94979 7.26328 7.33530 7.53327 7.79749 8.05678 8.16279 8.51084 9.05614 9.62211 11.10330 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.012045 B = 0.004792 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.024133 B = 5842.119131 C = 7132.525612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.354 6.354 3 C 0.495 3.505 4 O -0.484 6.484 5 C -0.180 4.180 6 H 0.157 0.843 7 C -0.082 4.082 8 H 0.154 0.846 9 C 0.075 3.925 10 N -0.530 5.530 11 C 0.193 3.807 12 C -0.508 4.508 13 H 0.065 0.935 14 C 0.057 3.943 15 N -0.896 5.896 16 Si 0.895 3.105 17 H -0.280 1.280 18 H -0.288 1.288 19 H -0.274 1.274 20 C 0.067 3.933 21 C -0.092 4.092 22 C -0.134 4.134 23 C -0.145 4.145 24 C 0.235 3.765 25 F -0.151 7.151 26 F -0.145 7.145 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.102 0.898 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.030 0.970 33 H -0.008 1.008 34 H 0.261 0.739 35 H 0.090 0.910 36 H 0.020 0.980 37 H 0.059 0.941 38 H 0.035 0.965 39 H 0.070 0.930 40 H 0.050 0.950 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.427 -11.653 -9.774 17.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.271 6.271 3 C 0.336 3.664 4 O -0.370 6.370 5 C -0.201 4.201 6 H 0.175 0.825 7 C -0.102 4.102 8 H 0.171 0.829 9 C -0.054 4.054 10 N -0.254 5.254 11 C 0.068 3.932 12 C -0.546 4.546 13 H 0.083 0.917 14 C -0.145 4.145 15 N -0.535 5.535 16 Si 0.723 3.277 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.199 1.199 20 C -0.061 4.061 21 C -0.111 4.111 22 C -0.191 4.191 23 C -0.203 4.203 24 C 0.198 3.802 25 F -0.131 7.131 26 F -0.125 7.125 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.121 0.879 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.048 0.952 33 H 0.010 0.990 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.038 0.962 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.089 0.911 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.982 -11.053 -9.595 17.174 hybrid contribution 0.665 0.300 0.676 0.994 sum -8.318 -10.753 -8.920 16.260 Atomic orbital electron populations 1.23320 0.75804 1.03809 1.02881 1.86470 1.23722 1.32779 1.84104 1.22104 0.89648 0.81669 0.72968 1.90718 1.66318 1.36192 1.43774 1.23458 0.90224 1.03862 1.02551 0.82510 1.23908 1.00580 0.92929 0.92770 0.82869 1.21638 0.92196 0.92948 0.98572 1.62018 1.42424 1.14542 1.06456 1.19778 0.93082 0.96657 0.83701 1.21128 1.41238 0.91582 1.00665 0.91668 1.24973 0.95668 0.98112 0.95722 1.69961 1.43517 1.34997 1.05061 0.86545 0.77628 0.85583 0.77928 1.20652 1.21401 1.19853 1.22080 0.92652 1.01609 0.89795 1.21136 0.96528 0.98906 0.94527 1.21670 0.99336 0.97550 1.00557 1.21817 0.99094 1.01505 0.97902 1.19782 0.78699 1.01255 0.80497 1.93069 1.70569 1.91337 1.58152 1.93058 1.41146 1.85366 1.92961 0.91619 0.91646 0.87915 0.93678 0.90016 0.95192 0.98996 0.92935 0.89168 0.96162 0.92222 0.94595 0.91113 0.93120 0.93307 0.93256 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.37 16 2 O -0.35 -4.19 10.56 -39.26 -0.41 -4.61 16 3 C 0.49 6.93 7.37 36.00 0.27 7.20 16 4 O -0.48 -8.05 16.01 -18.75 -0.30 -8.35 16 5 C -0.18 -2.40 6.01 -91.78 -0.55 -2.95 16 6 H 0.16 1.57 8.14 -51.93 -0.42 1.14 16 7 C -0.08 -1.33 4.69 -90.62 -0.42 -1.75 16 8 H 0.15 2.75 7.67 -51.93 -0.40 2.35 16 9 C 0.08 1.23 5.07 -3.82 -0.02 1.21 16 10 N -0.53 -10.51 3.79 -236.07 -0.89 -11.40 16 11 C 0.19 4.83 4.55 -4.97 -0.02 4.81 16 12 C -0.51 -13.84 8.23 -34.44 -0.28 -14.13 16 13 H 0.07 1.75 7.31 -52.49 -0.38 1.37 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 16 Si 0.90 21.60 29.54 -169.99 -5.02 16.57 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 C 0.07 1.20 4.19 -3.82 -0.02 1.18 16 21 C -0.09 -1.35 2.96 -90.62 -0.27 -1.62 16 22 C -0.13 -2.05 9.08 37.16 0.34 -1.71 16 23 C -0.15 -1.82 9.19 37.16 0.34 -1.48 16 24 C 0.23 3.94 5.14 -26.73 -0.14 3.80 16 25 F -0.15 -2.83 17.13 2.25 0.04 -2.79 16 26 F -0.15 -2.55 16.48 2.25 0.04 -2.51 16 27 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 28 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 29 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.76 6.92 -51.93 -0.36 0.40 16 31 H 0.08 1.11 6.45 -51.93 -0.33 0.78 16 32 H 0.03 0.82 7.44 -51.93 -0.39 0.43 16 33 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.09 1.84 6.58 -51.93 -0.34 1.50 16 36 H 0.02 0.35 8.00 -51.93 -0.42 -0.06 16 37 H 0.06 0.82 6.67 -51.93 -0.35 0.48 16 38 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 1.21 7.73 -51.93 -0.40 0.81 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 365.06 15.07 5.50 5.50 Total: -1.00 -31.11 365.06 -6.85 -37.97 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -6.73 Total: -1.92 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 0.19 Total: -2.57 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: -0.16 Total: -37.29 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -0.71 Total: -12.96 kcal Atomic # 9 Polarization: -5.38 SS G_CDS: 0.08 Total: -5.30 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.11 -6.85 -37.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893883244.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.871 kcal (2) G-P(sol) polarization free energy of solvation -31.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds