Wall clock time and date at job start Tue Mar 31 2020 08:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 119.99707 * 2 1 4 4 C 1.52999 * 109.47335 * 0.02562 * 3 2 1 5 5 C 1.53001 * 109.47397 * 240.00335 * 3 2 1 6 6 C 1.53001 * 109.47162 * 120.00300 * 3 2 1 7 7 C 1.50705 * 109.47382 * 180.02562 * 6 3 2 8 8 O 1.21295 * 119.99707 * 0.02562 * 7 6 3 9 9 N 1.34767 * 120.00334 * 179.97438 * 7 6 3 10 10 C 1.46505 * 119.99965 * 4.73840 * 9 7 6 11 11 C 1.50700 * 109.47457 * 270.00209 * 10 9 7 12 12 H 1.08002 * 119.99601 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00123 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00189 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 119.99940 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47150 * 90.00022 * 15 13 11 17 17 H 1.48501 * 109.46988 * 209.99776 * 15 13 11 18 18 H 1.48501 * 109.47435 * 329.99840 * 15 13 11 19 19 C 1.40029 * 120.00286 * 184.74021 * 9 7 6 20 20 C 1.38849 * 120.04594 * 67.64283 * 19 9 7 21 21 C 1.38112 * 119.95571 * 179.72453 * 20 19 9 22 22 C 1.38469 * 120.04443 * 0.55038 * 21 20 19 23 23 F 1.35099 * 119.95758 * 179.70475 * 22 21 20 24 24 C 1.38476 * 120.09159 * 359.72205 * 22 21 20 25 25 C 1.38115 * 120.04287 * 0.02562 * 24 22 21 26 26 H 1.07992 * 120.00630 * 359.97438 * 1 2 3 27 27 H 1.08005 * 119.99657 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.00564 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47781 * 179.97438 * 4 3 2 30 30 H 1.09004 * 109.47326 * 300.00286 * 4 3 2 31 31 H 1.09005 * 109.47348 * 59.99624 * 4 3 2 32 32 H 1.09003 * 109.46991 * 299.99807 * 5 3 2 33 33 H 1.08996 * 109.47284 * 59.99505 * 5 3 2 34 34 H 1.08997 * 109.47246 * 180.02562 * 5 3 2 35 35 H 1.08997 * 109.47304 * 59.99688 * 6 3 2 36 36 H 1.09008 * 109.46888 * 299.99421 * 6 3 2 37 37 H 1.09005 * 109.46561 * 29.99916 * 10 9 7 38 38 H 1.09004 * 109.47073 * 149.99781 * 10 9 7 39 39 H 0.96995 * 120.00486 * 180.02562 * 14 13 11 40 40 H 1.08002 * 120.01859 * 359.97438 * 20 19 9 41 41 H 1.08005 * 119.97913 * 180.25059 * 21 20 19 42 42 H 1.08003 * 119.98106 * 179.97438 * 24 22 21 43 43 H 1.07998 * 120.02353 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 1.0692 2.4680 0.0006 5 6 2.9430 1.3863 -1.2493 6 6 2.9431 1.3862 1.2492 7 6 3.6961 2.6916 1.2496 8 8 3.5437 3.4799 0.3403 9 7 4.5380 2.9837 2.2606 10 6 4.8007 1.9906 3.3051 11 6 3.8030 2.1599 4.4218 12 1 3.0489 2.9306 4.3598 13 6 3.8530 1.3311 5.5225 14 7 2.9826 1.4792 6.4972 15 14 5.1569 -0.0022 5.6292 16 1 6.3681 0.5421 6.2942 17 1 4.6317 -1.1462 6.4170 18 1 5.5076 -0.4623 4.2616 19 6 5.1615 4.2364 2.3128 20 6 4.4078 5.3790 2.5459 21 6 5.0256 6.6130 2.6027 22 6 6.3940 6.7125 2.4160 23 9 6.9956 7.9211 2.4660 24 6 7.1468 5.5748 2.1778 25 6 6.5336 4.3384 2.1254 26 1 -0.5401 0.9352 0.0004 27 1 -0.5400 -0.9354 0.0004 28 1 1.8501 -0.9353 0.0004 29 1 1.6140 3.4120 0.0011 30 1 0.4421 2.4105 -0.8891 31 1 0.4428 2.4101 0.8908 32 1 3.6514 0.5579 -1.2493 33 1 2.3164 1.3285 -2.1392 34 1 3.4883 2.3301 -1.2490 35 1 3.6514 0.5577 1.2492 36 1 2.3164 1.3285 2.1393 37 1 4.7095 0.9889 2.8852 38 1 5.8092 2.1309 3.6945 39 1 3.0179 0.8964 7.2717 40 1 3.3398 5.3023 2.6868 41 1 4.4402 7.5015 2.7881 42 1 8.2139 5.6546 2.0320 43 1 7.1209 3.4514 1.9392 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900630799.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:13 Heat of formation + Delta-G solvation = -32.044846 kcal Electronic energy + Delta-G solvation = -25479.337259 eV Core-core repulsion = 21825.793806 eV Total energy + Delta-G solvation = -3653.543453 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.67632 -40.29600 -38.55568 -36.72302 -35.12021 -32.64505 -31.12646 -30.92027 -29.72440 -28.06330 -27.01430 -26.96832 -23.17235 -22.89146 -22.35657 -21.61068 -19.02331 -17.82597 -17.47187 -17.20638 -16.83899 -16.20449 -15.96863 -15.36572 -15.03831 -14.80033 -14.43594 -14.13210 -14.00587 -13.77591 -13.33430 -13.16182 -12.97054 -12.78985 -12.52727 -12.24140 -12.10760 -11.87940 -11.81818 -11.43394 -11.30437 -10.97112 -10.87020 -10.83708 -10.71097 -10.52804 -10.40436 -10.30023 -9.74001 -9.17706 -9.05399 -8.86208 -8.79394 -8.62016 -7.75978 -6.29077 -4.31752 1.36763 1.49390 2.48166 3.11484 3.12029 3.17952 3.21165 3.58262 3.85090 4.19181 4.48683 4.92354 4.98907 5.00946 5.05741 5.06689 5.27868 5.44795 5.48990 5.51665 5.61033 5.63988 5.77070 5.94190 5.97329 6.03186 6.10747 6.15963 6.28059 6.30914 6.32073 6.36910 6.42595 6.45995 6.52977 6.65986 6.74353 6.76348 6.85068 6.94391 7.02651 7.31874 7.41267 7.90545 8.27095 8.71445 8.78741 9.28821 10.83294 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.009237 B = 0.006259 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3030.537589 B = 4472.170377 C = 6649.413135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.138 4.138 3 C -0.021 4.021 4 C -0.153 4.153 5 C -0.147 4.147 6 C -0.123 4.123 7 C 0.528 3.472 8 O -0.545 6.545 9 N -0.558 5.558 10 C 0.209 3.791 11 C -0.543 4.543 12 H 0.080 0.920 13 C 0.079 3.921 14 N -0.887 5.887 15 Si 0.869 3.131 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.264 1.264 19 C 0.166 3.834 20 C -0.074 4.074 21 C -0.143 4.143 22 C 0.081 3.919 23 F -0.146 7.146 24 C -0.145 4.145 25 C -0.100 4.100 26 H 0.103 0.897 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.085 0.915 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.040 0.960 38 H 0.032 0.968 39 H 0.268 0.732 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.483 1.071 -10.492 10.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.156 4.156 3 C -0.022 4.022 4 C -0.210 4.210 5 C -0.204 4.204 6 C -0.163 4.163 7 C 0.319 3.681 8 O -0.425 6.425 9 N -0.285 5.285 10 C 0.090 3.910 11 C -0.581 4.581 12 H 0.098 0.902 13 C -0.125 4.125 14 N -0.524 5.524 15 Si 0.695 3.305 16 H -0.198 1.198 17 H -0.207 1.207 18 H -0.188 1.188 19 C 0.075 3.925 20 C -0.093 4.093 21 C -0.162 4.162 22 C 0.062 3.938 23 F -0.125 7.125 24 C -0.164 4.164 25 C -0.119 4.119 26 H 0.121 0.879 27 H 0.110 0.890 28 H 0.123 0.877 29 H 0.104 0.896 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.129 0.871 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.078 0.922 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.351 1.399 -10.765 11.107 hybrid contribution 0.719 -0.777 0.621 1.228 sum 3.070 0.622 -10.144 10.617 Atomic orbital electron populations 1.23947 0.96186 1.01801 1.01883 1.22942 0.95918 0.97684 0.99063 1.19402 0.95019 0.93054 0.94678 1.22156 0.98515 0.99776 1.00573 1.22039 0.99147 1.03409 0.95790 1.21697 0.99212 0.95205 1.00151 1.20630 0.78182 0.88871 0.80449 1.90520 1.64679 1.51623 1.35632 1.45714 1.43970 1.13240 1.25581 1.19971 0.97732 0.86949 0.86389 1.21276 1.15755 1.19154 1.01886 0.90227 1.24837 0.95500 0.96958 0.95196 1.69873 1.35417 1.38725 1.08365 0.86963 0.82372 0.82165 0.78969 1.19846 1.20726 1.18818 1.17587 0.91130 0.85896 0.97912 1.21127 1.00733 0.90896 0.96589 1.20954 0.92795 0.98832 1.03617 1.17630 0.91296 0.80290 1.04621 1.91457 1.83887 1.42903 1.94266 1.20870 1.00261 0.91236 1.04081 1.21046 0.94073 0.97264 0.99549 0.87887 0.89018 0.87700 0.89590 0.93333 0.93039 0.93681 0.93441 0.89496 0.89275 0.87092 0.94171 0.95027 0.92239 0.84983 0.84829 0.84886 0.85107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.51 13.70 29.01 0.40 -2.11 16 2 C -0.14 -1.84 8.76 -36.03 -0.32 -2.16 16 3 C -0.02 -0.31 0.74 -155.66 -0.11 -0.43 16 4 C -0.15 -2.30 6.83 37.16 0.25 -2.05 16 5 C -0.15 -2.08 8.16 37.16 0.30 -1.77 16 6 C -0.12 -2.06 3.41 -27.88 -0.10 -2.15 16 7 C 0.53 9.80 6.94 -10.99 -0.08 9.73 16 8 O -0.55 -10.56 11.10 5.54 0.06 -10.50 16 9 N -0.56 -10.80 2.51 -114.71 -0.29 -11.09 16 10 C 0.21 4.38 3.95 -5.19 -0.02 4.36 16 11 C -0.54 -13.63 9.71 -34.44 -0.33 -13.96 16 12 H 0.08 2.24 8.06 -52.49 -0.42 1.81 16 13 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 14 N -0.89 -25.01 13.96 55.43 0.77 -24.24 16 15 Si 0.87 19.12 27.47 -169.99 -4.67 14.46 16 16 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.26 -5.38 6.54 56.52 0.37 -5.01 16 19 C 0.17 3.06 4.76 -83.66 -0.40 2.67 16 20 C -0.07 -1.31 9.53 -39.40 -0.38 -1.68 16 21 C -0.14 -2.22 10.02 -39.54 -0.40 -2.62 16 22 C 0.08 1.24 7.30 -39.41 -0.29 0.95 16 23 F -0.15 -2.18 17.26 2.25 0.04 -2.14 16 24 C -0.15 -2.11 10.02 -39.54 -0.40 -2.50 16 25 C -0.10 -1.60 9.69 -39.40 -0.38 -1.98 16 26 H 0.10 1.27 5.69 -52.49 -0.30 0.97 16 27 H 0.09 1.00 8.06 -52.48 -0.42 0.57 16 28 H 0.10 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.09 1.46 5.51 -51.93 -0.29 1.17 16 30 H 0.05 0.65 7.50 -51.93 -0.39 0.26 16 31 H 0.05 0.78 7.50 -51.93 -0.39 0.39 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 1.40 5.51 -51.93 -0.29 1.11 16 35 H 0.09 1.39 7.26 -51.93 -0.38 1.01 16 36 H 0.11 2.05 7.91 -51.92 -0.41 1.64 16 37 H 0.04 0.80 5.53 -51.93 -0.29 0.52 16 38 H 0.03 0.65 7.29 -51.93 -0.38 0.28 16 39 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.13 2.38 8.06 -52.49 -0.42 1.96 16 41 H 0.13 1.76 8.06 -52.48 -0.42 1.34 16 42 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 43 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 352.72 15.07 5.32 5.32 Total: -1.00 -27.63 352.72 -7.18 -34.80 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -6.08 Total: 7.13 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -2.33 Total: -13.73 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.49 Total: -35.33 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.06 Total: -10.50 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.67 Total: 14.46 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -27.63 -7.18 -34.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900630799.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.760 kcal (2) G-P(sol) polarization free energy of solvation -27.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds