Wall clock time and date at job start Tue Mar 31 2020 08:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 119.99707 * 2 1 4 4 C 1.52999 * 109.47335 * 0.02562 * 3 2 1 5 5 C 1.53001 * 109.47397 * 240.00335 * 3 2 1 6 6 C 1.53001 * 109.47162 * 120.00300 * 3 2 1 7 7 C 1.50705 * 109.47382 * 180.02562 * 6 3 2 8 8 O 1.21295 * 119.99707 * 0.02562 * 7 6 3 9 9 N 1.34767 * 120.00334 * 179.97438 * 7 6 3 10 10 C 1.46505 * 119.99965 * 4.73840 * 9 7 6 11 11 C 1.50700 * 109.47457 * 270.00209 * 10 9 7 12 12 H 1.08002 * 119.99601 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00123 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00189 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 119.99940 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47150 * 90.00022 * 15 13 11 17 17 H 1.48501 * 109.46988 * 209.99776 * 15 13 11 18 18 H 1.48501 * 109.47435 * 329.99840 * 15 13 11 19 19 C 1.40029 * 120.00286 * 184.74021 * 9 7 6 20 20 C 1.38849 * 120.04594 * 67.64283 * 19 9 7 21 21 C 1.38112 * 119.95571 * 179.72453 * 20 19 9 22 22 C 1.38469 * 120.04443 * 0.55038 * 21 20 19 23 23 F 1.35099 * 119.95758 * 179.70475 * 22 21 20 24 24 C 1.38476 * 120.09159 * 359.72205 * 22 21 20 25 25 C 1.38115 * 120.04287 * 0.02562 * 24 22 21 26 26 H 1.07992 * 120.00630 * 359.97438 * 1 2 3 27 27 H 1.08005 * 119.99657 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.00564 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47781 * 179.97438 * 4 3 2 30 30 H 1.09004 * 109.47326 * 300.00286 * 4 3 2 31 31 H 1.09005 * 109.47348 * 59.99624 * 4 3 2 32 32 H 1.09003 * 109.46991 * 299.99807 * 5 3 2 33 33 H 1.08996 * 109.47284 * 59.99505 * 5 3 2 34 34 H 1.08997 * 109.47246 * 180.02562 * 5 3 2 35 35 H 1.08997 * 109.47304 * 59.99688 * 6 3 2 36 36 H 1.09008 * 109.46888 * 299.99421 * 6 3 2 37 37 H 1.09005 * 109.46561 * 29.99916 * 10 9 7 38 38 H 1.09004 * 109.47073 * 149.99781 * 10 9 7 39 39 H 0.96995 * 120.00486 * 180.02562 * 14 13 11 40 40 H 1.08002 * 120.01859 * 359.97438 * 20 19 9 41 41 H 1.08005 * 119.97913 * 180.25059 * 21 20 19 42 42 H 1.08003 * 119.98106 * 179.97438 * 24 22 21 43 43 H 1.07998 * 120.02353 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 1.0692 2.4680 0.0006 5 6 2.9430 1.3863 -1.2493 6 6 2.9431 1.3862 1.2492 7 6 3.6961 2.6916 1.2496 8 8 3.5437 3.4799 0.3403 9 7 4.5380 2.9837 2.2606 10 6 4.8007 1.9906 3.3051 11 6 3.8030 2.1599 4.4218 12 1 3.0489 2.9306 4.3598 13 6 3.8530 1.3311 5.5225 14 7 2.9826 1.4792 6.4972 15 14 5.1569 -0.0022 5.6292 16 1 6.3681 0.5421 6.2942 17 1 4.6317 -1.1462 6.4170 18 1 5.5076 -0.4623 4.2616 19 6 5.1615 4.2364 2.3128 20 6 4.4078 5.3790 2.5459 21 6 5.0256 6.6130 2.6027 22 6 6.3940 6.7125 2.4160 23 9 6.9956 7.9211 2.4660 24 6 7.1468 5.5748 2.1778 25 6 6.5336 4.3384 2.1254 26 1 -0.5401 0.9352 0.0004 27 1 -0.5400 -0.9354 0.0004 28 1 1.8501 -0.9353 0.0004 29 1 1.6140 3.4120 0.0011 30 1 0.4421 2.4105 -0.8891 31 1 0.4428 2.4101 0.8908 32 1 3.6514 0.5579 -1.2493 33 1 2.3164 1.3285 -2.1392 34 1 3.4883 2.3301 -1.2490 35 1 3.6514 0.5577 1.2492 36 1 2.3164 1.3285 2.1393 37 1 4.7095 0.9889 2.8852 38 1 5.8092 2.1309 3.6945 39 1 3.0179 0.8964 7.2717 40 1 3.3398 5.3023 2.6868 41 1 4.4402 7.5015 2.7881 42 1 8.2139 5.6546 2.0320 43 1 7.1209 3.4514 1.9392 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900630799.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:12 Heat of formation + Delta-G solvation = -44.547769 kcal Electronic energy + Delta-G solvation = -25479.879427 eV Core-core repulsion = 21825.793806 eV Total energy + Delta-G solvation = -3654.085621 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.88746 -41.70105 -39.82612 -37.96781 -36.65866 -34.55321 -32.28932 -32.16972 -31.10001 -29.69696 -28.39196 -28.15693 -24.73793 -24.16844 -23.82592 -22.81128 -20.38061 -19.11302 -19.02321 -18.72580 -18.19609 -17.66911 -17.34197 -16.57244 -16.35120 -16.22290 -15.81861 -15.62232 -15.26597 -15.01026 -14.63012 -14.55206 -14.37880 -14.22042 -13.87016 -13.75917 -13.53551 -13.26099 -13.09269 -12.82588 -12.61377 -12.53153 -12.34571 -12.10910 -11.98255 -11.92397 -11.74331 -11.69444 -11.47915 -10.79864 -10.46541 -10.20444 -10.11242 -10.04143 -9.19637 -8.29064 -6.36755 0.07062 0.23967 1.41169 1.41466 1.45336 1.51019 1.66275 2.16144 2.34758 2.55866 3.05222 3.24581 3.67609 3.77279 3.88298 3.89495 4.04001 4.19245 4.23287 4.38512 4.40030 4.43909 4.47890 4.68419 4.79113 4.82619 4.84246 4.88166 4.89610 4.98907 5.08245 5.11171 5.12629 5.15159 5.22629 5.36438 5.45759 5.50929 5.54509 5.64703 5.79711 5.97600 6.00877 6.19742 6.51027 6.68321 7.23492 7.33416 8.87049 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.009237 B = 0.006259 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3030.537589 B = 4472.170377 C = 6649.413135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.150 4.150 3 C -0.020 4.020 4 C -0.148 4.148 5 C -0.140 4.140 6 C -0.119 4.119 7 C 0.522 3.478 8 O -0.555 6.555 9 N -0.562 5.562 10 C 0.218 3.782 11 C -0.538 4.538 12 H 0.030 0.970 13 C 0.020 3.980 14 N -0.941 5.941 15 Si 0.936 3.064 16 H -0.268 1.268 17 H -0.285 1.285 18 H -0.230 1.230 19 C 0.134 3.866 20 C -0.097 4.097 21 C -0.142 4.142 22 C 0.079 3.921 23 F -0.142 7.142 24 C -0.133 4.133 25 C -0.101 4.101 26 H 0.099 0.901 27 H 0.111 0.889 28 H 0.121 0.879 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.041 0.959 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.059 0.941 38 H 0.044 0.956 39 H 0.268 0.732 40 H 0.112 0.888 41 H 0.152 0.848 42 H 0.169 0.831 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.691 -0.333 -11.929 12.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.168 4.168 3 C -0.020 4.020 4 C -0.205 4.205 5 C -0.197 4.197 6 C -0.159 4.159 7 C 0.314 3.686 8 O -0.435 6.435 9 N -0.289 5.289 10 C 0.097 3.903 11 C -0.576 4.576 12 H 0.049 0.951 13 C -0.179 4.179 14 N -0.581 5.581 15 Si 0.759 3.241 16 H -0.193 1.193 17 H -0.211 1.211 18 H -0.152 1.152 19 C 0.043 3.957 20 C -0.117 4.117 21 C -0.162 4.162 22 C 0.060 3.940 23 F -0.120 7.120 24 C -0.152 4.152 25 C -0.120 4.120 26 H 0.117 0.883 27 H 0.129 0.871 28 H 0.139 0.861 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.123 0.877 36 H 0.105 0.895 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.130 0.870 41 H 0.169 0.831 42 H 0.186 0.814 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.565 0.018 -12.237 13.061 hybrid contribution -0.055 -0.167 1.055 1.069 sum 4.511 -0.149 -11.183 12.059 Atomic orbital electron populations 1.24132 0.96093 1.02631 1.00482 1.22961 0.96225 0.97309 1.00292 1.19395 0.94801 0.93775 0.94043 1.22084 0.98538 0.99005 1.00913 1.21942 0.99238 1.02711 0.95799 1.21701 0.99255 0.94714 1.00208 1.20999 0.77990 0.89434 0.80175 1.90519 1.64790 1.52143 1.36042 1.45692 1.44496 1.13483 1.25223 1.19795 0.96689 0.88284 0.85532 1.21424 1.15344 1.17421 1.03431 0.95133 1.25754 0.97853 0.99663 0.94585 1.70046 1.38114 1.40482 1.09441 0.85887 0.79062 0.78576 0.80625 1.19308 1.21125 1.15231 1.17953 0.92514 0.85536 0.99681 1.21097 1.00067 0.92106 0.98397 1.21109 0.93525 0.98618 1.02910 1.17733 0.91156 0.80834 1.04303 1.91473 1.83683 1.42678 1.94188 1.21223 1.01864 0.90118 1.01967 1.21275 0.92985 0.98754 0.98990 0.88276 0.87055 0.86097 0.91958 0.91675 0.93943 0.92285 0.92249 0.91705 0.87650 0.89480 0.92305 0.93770 0.92321 0.86991 0.83058 0.81394 0.83016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.56 13.70 67.78 0.93 -3.63 16 2 C -0.15 -3.72 8.76 25.65 0.22 -3.50 16 3 C -0.02 -0.57 0.74 -52.93 -0.04 -0.60 16 4 C -0.15 -4.53 6.83 71.98 0.49 -4.03 16 5 C -0.14 -3.75 8.16 71.98 0.59 -3.16 16 6 C -0.12 -3.96 3.41 29.85 0.10 -3.86 16 7 C 0.52 19.65 6.94 87.66 0.61 20.26 16 8 O -0.56 -22.00 11.10 -3.08 -0.03 -22.03 16 9 N -0.56 -21.84 2.51 -635.22 -1.59 -23.44 16 10 C 0.22 8.92 3.95 85.63 0.34 9.26 16 11 C -0.54 -27.75 9.71 25.60 0.25 -27.50 16 12 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 13 C 0.02 1.08 5.47 84.65 0.46 1.54 16 14 N -0.94 -54.98 13.96 21.45 0.30 -54.68 16 15 Si 0.94 38.48 27.47 68.60 1.88 40.36 16 16 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 17 H -0.29 -11.86 7.11 99.48 0.71 -11.16 16 18 H -0.23 -8.13 6.54 99.48 0.65 -7.48 16 19 C 0.13 4.95 4.76 38.12 0.18 5.13 16 20 C -0.10 -3.56 9.53 22.39 0.21 -3.35 16 21 C -0.14 -4.42 10.02 22.29 0.22 -4.19 16 22 C 0.08 2.28 7.30 22.38 0.16 2.45 16 23 F -0.14 -3.91 17.26 44.97 0.78 -3.13 16 24 C -0.13 -3.49 10.02 22.30 0.22 -3.27 16 25 C -0.10 -3.03 9.69 22.39 0.22 -2.81 16 26 H 0.10 2.35 5.69 -2.91 -0.02 2.33 16 27 H 0.11 2.14 8.06 -2.91 -0.02 2.12 16 28 H 0.12 2.62 8.06 -2.91 -0.02 2.59 16 29 H 0.06 2.20 5.51 -2.39 -0.01 2.19 16 30 H 0.06 1.72 7.50 -2.38 -0.02 1.70 16 31 H 0.04 1.33 7.50 -2.38 -0.02 1.31 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.06 2.05 5.51 -2.39 -0.01 2.03 16 35 H 0.11 3.10 7.26 -2.39 -0.02 3.08 16 36 H 0.09 3.32 7.91 -2.38 -0.02 3.30 16 37 H 0.06 2.21 5.53 -2.38 -0.01 2.20 16 38 H 0.04 1.73 7.29 -2.39 -0.02 1.71 16 39 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 40 H 0.11 4.43 8.06 -2.91 -0.02 4.40 16 41 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 42 H 0.17 3.22 8.06 -2.91 -0.02 3.20 16 43 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -61.93 352.72 7.45 -54.47 By element: Atomic # 1 Polarization: 28.78 SS G_CDS: 0.95 Total: 29.73 kcal Atomic # 6 Polarization: -26.45 SS G_CDS: 5.17 Total: -21.28 kcal Atomic # 7 Polarization: -76.83 SS G_CDS: -1.29 Total: -78.12 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.03 Total: -22.03 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.78 Total: -3.13 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 1.88 Total: 40.36 kcal Total: -61.93 7.45 -54.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900630799.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.925 kcal (2) G-P(sol) polarization free energy of solvation -61.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds