Wall clock time and date at job start Tue Mar 31 2020 08:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50700 * 119.99852 * 2 1 4 4 H 1.09007 * 109.47182 * 359.97438 * 3 2 1 5 5 C 1.53003 * 109.46910 * 240.00220 * 3 2 1 6 6 C 1.52994 * 109.47331 * 64.99552 * 5 3 2 7 7 C 1.52997 * 109.47307 * 120.00184 * 3 2 1 8 8 C 1.50702 * 109.46881 * 294.99399 * 7 3 2 9 9 O 1.21281 * 119.99982 * 353.86717 * 8 7 3 10 10 N 1.34775 * 119.99767 * 173.86119 * 8 7 3 11 11 C 1.37126 * 120.00266 * 4.97154 * 10 8 7 12 12 H 1.07994 * 119.99814 * 351.03844 * 11 10 8 13 13 C 1.38884 * 119.99829 * 171.02963 * 11 10 8 14 14 N 1.31429 * 119.99860 * 13.47497 * 13 11 10 15 15 Si 1.86798 * 119.99673 * 193.47281 * 13 11 10 16 16 H 1.48504 * 109.47037 * 90.00305 * 15 13 11 17 17 H 1.48502 * 109.46952 * 210.00416 * 15 13 11 18 18 H 1.48505 * 109.47176 * 330.00306 * 15 13 11 19 19 C 1.39844 * 119.99660 * 184.96899 * 10 8 7 20 20 C 1.38972 * 120.05379 * 269.99809 * 19 10 8 21 21 C 1.38048 * 119.94703 * 180.27440 * 20 19 10 22 22 C 1.38535 * 120.04838 * 359.47919 * 21 20 19 23 23 F 1.35103 * 119.94473 * 180.27569 * 22 21 20 24 24 C 1.38497 * 120.10726 * 0.54694 * 22 21 20 25 25 C 1.38075 * 120.05178 * 359.70384 * 24 22 21 26 26 C 1.50703 * 120.02770 * 179.97438 * 25 24 22 27 27 H 1.07998 * 119.99890 * 0.02562 * 1 2 3 28 28 H 1.07995 * 120.00029 * 180.02562 * 1 2 3 29 29 H 1.07993 * 119.99803 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.47425 * 185.00385 * 5 3 2 31 31 H 1.09001 * 109.46637 * 304.99661 * 5 3 2 32 32 H 1.09000 * 109.47157 * 180.02562 * 6 5 3 33 33 H 1.08998 * 109.47739 * 300.00246 * 6 5 3 34 34 H 1.09001 * 109.47171 * 60.00436 * 6 5 3 35 35 H 1.09005 * 109.47179 * 175.00222 * 7 3 2 36 36 H 1.08994 * 109.47287 * 54.99257 * 7 3 2 37 37 H 0.97002 * 119.99639 * 174.99158 * 14 13 11 38 38 H 1.07998 * 120.02834 * 0.02562 * 20 19 10 39 39 H 1.08001 * 119.96874 * 179.72686 * 21 20 19 40 40 H 1.08002 * 119.96941 * 179.72602 * 24 22 21 41 41 H 1.09000 * 109.47523 * 270.02373 * 26 25 24 42 42 H 1.09004 * 109.46909 * 30.02077 * 26 25 24 43 43 H 1.09004 * 109.47324 * 150.02360 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1337 -0.0005 5 6 2.9431 1.3862 -1.2493 6 6 2.0564 1.4306 -2.4953 7 6 2.9432 1.3862 1.2492 8 6 2.0698 1.4302 2.4765 9 8 0.8653 1.5120 2.3610 10 7 2.6273 1.3785 3.7025 11 6 3.9920 1.3888 3.8361 12 1 4.6207 1.2923 2.9634 13 6 4.5656 1.5236 5.0938 14 7 3.8280 1.3761 6.1716 15 14 6.3852 1.9144 5.2534 16 1 6.5745 3.3870 5.2826 17 1 6.9102 1.3227 6.5102 18 1 7.1175 1.3441 4.0941 19 6 1.8140 1.3144 4.8383 20 6 1.3946 2.4840 5.4609 21 6 0.5964 2.4181 6.5853 22 6 0.2046 1.1875 7.0866 23 9 -0.5812 1.1255 8.1839 24 6 0.6217 0.0206 6.4682 25 6 1.4244 0.0814 5.3464 26 6 1.8784 -1.1887 4.6742 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 3.5541 2.2878 -1.2057 31 1 3.5906 0.5105 -1.2951 32 1 2.6831 1.4879 -3.3853 33 1 1.4455 0.5290 -2.5390 34 1 1.4090 2.3063 -2.4495 35 1 3.5540 2.2880 1.2055 36 1 3.5906 0.5106 1.2952 37 1 4.2414 1.3979 7.0488 38 1 1.6962 3.4436 5.0678 39 1 0.2739 3.3266 7.0720 40 1 0.3186 -0.9377 6.8636 41 1 2.8238 -1.5124 5.1097 42 1 1.1270 -1.9650 4.8190 43 1 2.0129 -1.0074 3.6078 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906081453.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:46 Heat of formation + Delta-G solvation = -39.503853 kcal Electronic energy + Delta-G solvation = -25893.880355 eV Core-core repulsion = 22240.013455 eV Total energy + Delta-G solvation = -3653.866900 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.03313 -39.63402 -37.76342 -36.09577 -34.60585 -31.85773 -31.57783 -31.39851 -30.11081 -28.41791 -26.22821 -25.00399 -24.16127 -21.79402 -21.29276 -20.69832 -19.40783 -18.99234 -17.65417 -16.30228 -16.13869 -15.73415 -14.88027 -14.86635 -14.72230 -14.55502 -14.14669 -13.94071 -13.64712 -13.25552 -12.91193 -12.79267 -12.58445 -12.41496 -12.31942 -11.98961 -11.88103 -11.50394 -11.38513 -11.23883 -11.12022 -10.94002 -10.84539 -10.74325 -10.58253 -10.48808 -10.28385 -10.20721 -10.09228 -9.44880 -8.87120 -8.44395 -8.09003 -7.82909 -7.56002 -6.16342 -4.03511 2.29462 2.33605 2.88872 3.05182 3.14602 3.16920 3.76267 3.96982 4.53197 4.68295 4.99345 5.11871 5.20133 5.22949 5.37608 5.52623 5.66890 5.70344 5.70760 5.86229 5.96174 5.99612 6.00776 6.11315 6.18574 6.28132 6.28286 6.35340 6.36852 6.44152 6.48591 6.51665 6.62303 6.71692 6.81489 7.02182 7.10478 7.15694 7.24331 7.32395 7.39677 7.55583 7.69148 7.90441 8.38467 8.96605 9.34398 9.77483 10.57148 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.012271 B = 0.005891 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.177554 B = 4751.904889 C = 6323.996639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.139 4.139 3 C -0.045 4.045 4 H 0.078 0.922 5 C -0.116 4.116 6 C -0.149 4.149 7 C -0.113 4.113 8 C 0.468 3.532 9 O -0.584 6.584 10 N -0.422 5.422 11 C -0.344 4.344 12 H 0.106 0.894 13 C 0.039 3.961 14 N -0.853 5.853 15 Si 0.922 3.078 16 H -0.277 1.277 17 H -0.284 1.284 18 H -0.271 1.271 19 C 0.257 3.743 20 C -0.069 4.069 21 C -0.152 4.152 22 C 0.063 3.937 23 F -0.160 7.160 24 C -0.148 4.148 25 C -0.046 4.046 26 C -0.093 4.093 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.272 0.728 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.068 0.932 42 H 0.047 0.953 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.504 -1.479 -7.215 7.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.064 4.064 4 H 0.096 0.904 5 C -0.154 4.154 6 C -0.206 4.206 7 C -0.153 4.153 8 C 0.259 3.741 9 O -0.468 6.468 10 N -0.140 5.140 11 C -0.470 4.470 12 H 0.124 0.876 13 C -0.167 4.167 14 N -0.489 5.489 15 Si 0.749 3.251 16 H -0.203 1.203 17 H -0.209 1.209 18 H -0.196 1.196 19 C 0.166 3.834 20 C -0.089 4.089 21 C -0.171 4.171 22 C 0.044 3.956 23 F -0.139 7.139 24 C -0.168 4.168 25 C -0.048 4.048 26 C -0.150 4.150 27 H 0.112 0.888 28 H 0.102 0.898 29 H 0.114 0.886 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.129 0.871 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.086 0.914 42 H 0.066 0.934 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.071 -1.377 -7.008 7.222 hybrid contribution 1.156 0.140 0.822 1.425 sum 0.086 -1.237 -6.186 6.309 Atomic orbital electron populations 1.23589 0.95958 1.00816 1.00598 1.22617 0.95867 0.97183 1.00066 1.20167 0.96639 0.96606 0.92938 0.90371 1.21542 0.97892 1.01737 0.94190 1.21756 0.99767 1.01958 0.97155 1.21433 0.98096 1.03468 0.92278 1.20127 0.88403 0.81500 0.84119 1.90587 1.14956 1.54851 1.86436 1.41402 1.05836 1.64289 1.02464 1.19692 0.79799 1.52309 0.95198 0.87614 1.25250 1.00064 0.96310 0.95099 1.69858 1.35059 1.45595 0.98421 0.85995 0.82229 0.78866 0.77989 1.20318 1.20948 1.19556 1.16794 0.88436 0.91443 0.86740 1.20673 0.96163 0.97777 0.94285 1.20553 1.02414 0.95484 0.98690 1.17393 0.96954 0.94758 0.86536 1.91373 1.72914 1.97425 1.52212 1.20454 1.02301 0.96269 0.97771 1.19447 0.95982 0.94875 0.94450 1.20494 1.00296 0.93774 1.00419 0.88777 0.89783 0.88554 0.92014 0.92104 0.93371 0.92566 0.92968 0.89759 0.90010 0.91554 0.87079 0.86675 0.86627 0.91350 0.93398 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.73 13.37 29.01 0.39 -2.34 16 2 C -0.14 -2.18 6.84 -36.03 -0.25 -2.42 16 3 C -0.04 -0.69 1.81 -91.77 -0.17 -0.86 16 4 H 0.08 1.33 7.51 -51.93 -0.39 0.94 16 5 C -0.12 -1.43 5.39 -26.73 -0.14 -1.57 16 6 C -0.15 -1.65 9.73 37.15 0.36 -1.29 16 7 C -0.11 -1.98 3.58 -27.88 -0.10 -2.08 16 8 C 0.47 10.30 6.60 -10.99 -0.07 10.22 16 9 O -0.58 -14.08 14.39 5.56 0.08 -14.00 16 10 N -0.42 -9.84 1.80 -58.97 -0.11 -9.94 16 11 C -0.34 -7.97 9.33 -14.94 -0.14 -8.11 16 12 H 0.11 2.28 6.36 -52.49 -0.33 1.95 16 13 C 0.04 0.92 5.41 -17.49 -0.09 0.82 16 14 N -0.85 -21.00 9.52 55.49 0.53 -20.47 16 15 Si 0.92 18.62 29.58 -169.99 -5.03 13.59 16 16 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 17 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 18 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 19 C 0.26 6.12 2.21 -83.67 -0.18 5.94 16 20 C -0.07 -1.60 8.94 -39.38 -0.35 -1.95 16 21 C -0.15 -3.24 10.02 -39.54 -0.40 -3.63 16 22 C 0.06 1.34 7.30 -39.38 -0.29 1.05 16 23 F -0.16 -3.24 17.27 2.25 0.04 -3.20 16 24 C -0.15 -3.16 9.67 -39.55 -0.38 -3.54 16 25 C -0.05 -1.03 5.22 -104.42 -0.54 -1.58 16 26 C -0.09 -1.89 9.77 36.01 0.35 -1.54 16 27 H 0.09 1.56 7.83 -52.49 -0.41 1.15 16 28 H 0.08 1.20 8.06 -52.49 -0.42 0.78 16 29 H 0.10 1.42 8.06 -52.49 -0.42 0.99 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.63 7.38 -51.93 -0.38 0.25 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.08 1.41 8.11 -51.93 -0.42 0.98 16 36 H 0.08 1.38 7.67 -51.93 -0.40 0.99 16 37 H 0.27 6.60 8.32 -40.82 -0.34 6.26 16 38 H 0.11 2.54 8.06 -52.49 -0.42 2.11 16 39 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 40 H 0.12 2.17 8.06 -52.49 -0.42 1.74 16 41 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.05 0.84 8.09 -51.93 -0.42 0.42 16 43 H 0.06 1.30 6.91 -51.93 -0.36 0.94 16 LS Contribution 358.22 15.07 5.40 5.40 Total: -1.00 -26.58 358.22 -7.58 -34.16 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -6.48 Total: 7.34 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -2.01 Total: -12.87 kcal Atomic # 7 Polarization: -30.84 SS G_CDS: 0.42 Total: -30.42 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.08 Total: -14.00 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.04 Total: -3.20 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -26.58 -7.58 -34.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906081453.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.346 kcal (2) G-P(sol) polarization free energy of solvation -26.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds