Wall clock time and date at job start Tue Mar 31 2020 08:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50703 * 119.99965 * 2 1 4 4 H 1.08998 * 109.46708 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47137 * 239.99855 * 3 2 1 6 6 C 1.53000 * 109.47257 * 64.99907 * 5 3 2 7 7 C 1.52998 * 109.47108 * 119.99620 * 3 2 1 8 8 C 1.50694 * 109.47099 * 295.00124 * 7 3 2 9 9 O 1.21288 * 120.00407 * 359.97438 * 8 7 3 10 10 N 1.34783 * 120.00154 * 180.02562 * 8 7 3 11 11 C 1.46502 * 119.99649 * 355.25976 * 10 8 7 12 12 C 1.50702 * 109.46731 * 90.00499 * 11 10 8 13 13 H 1.07996 * 120.00513 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00112 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99809 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00341 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.46972 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47019 * 119.99394 * 16 14 12 19 19 H 1.48498 * 109.47061 * 239.99691 * 16 14 12 20 20 C 1.40025 * 120.00522 * 175.26709 * 10 8 7 21 21 C 1.38848 * 120.04153 * 291.84976 * 20 10 8 22 22 C 1.38118 * 119.95416 * 179.76643 * 21 20 10 23 23 C 1.38486 * 120.04152 * 0.50747 * 22 21 20 24 24 F 1.35098 * 119.95371 * 179.72413 * 23 22 21 25 25 C 1.38475 * 120.08939 * 359.74498 * 23 22 21 26 26 C 1.38111 * 120.04560 * 359.97438 * 25 23 22 27 27 H 1.07995 * 120.00189 * 0.02562 * 1 2 3 28 28 H 1.07995 * 119.99554 * 179.97438 * 1 2 3 29 29 H 1.07995 * 120.00189 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47300 * 184.99930 * 5 3 2 31 31 H 1.08996 * 109.47155 * 305.00324 * 5 3 2 32 32 H 1.08999 * 109.47242 * 180.02562 * 6 5 3 33 33 H 1.09003 * 109.46985 * 300.00216 * 6 5 3 34 34 H 1.08998 * 109.47419 * 59.99980 * 6 5 3 35 35 H 1.09002 * 109.46958 * 55.00207 * 7 3 2 36 36 H 1.09005 * 109.46864 * 174.99804 * 7 3 2 37 37 H 1.08997 * 109.47317 * 210.00309 * 11 10 8 38 38 H 1.09003 * 109.47555 * 330.00950 * 11 10 8 39 39 H 0.97003 * 119.99490 * 180.02562 * 15 14 12 40 40 H 1.08004 * 120.02600 * 0.02562 * 21 20 10 41 41 H 1.07997 * 119.98062 * 180.23229 * 22 21 20 42 42 H 1.07991 * 119.97398 * 179.97438 * 25 23 22 43 43 H 1.07996 * 120.02125 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9432 1.3862 -1.2492 6 6 2.0566 1.4307 -2.4953 7 6 2.9431 1.3862 1.2493 8 6 2.0697 1.4301 2.4765 9 8 0.8625 1.4000 2.3632 10 7 2.6299 1.5039 3.7002 11 6 4.0863 1.4367 3.8441 12 6 4.6627 2.8273 3.7731 13 1 4.0097 3.6761 3.6342 14 6 6.0240 3.0158 3.8844 15 7 6.8194 1.9821 4.0531 16 14 6.7385 4.7396 3.7971 17 1 5.6408 5.7213 3.6050 18 1 7.4579 5.0418 5.0606 19 1 7.6846 4.8260 2.6559 20 6 1.8201 1.6445 4.8338 21 6 1.1144 2.8220 5.0421 22 6 0.3124 2.9570 6.1584 23 6 0.2200 1.9229 7.0749 24 9 -0.5606 2.0590 8.1691 25 6 0.9272 0.7498 6.8716 26 6 1.7257 0.6087 5.7536 27 1 -0.5400 0.9352 -0.0004 28 1 -0.5399 -0.9353 -0.0004 29 1 1.8500 -0.9352 0.0004 30 1 3.5541 2.2879 -1.2056 31 1 3.5906 0.5105 -1.2951 32 1 2.6832 1.4880 -3.3853 33 1 1.4456 0.5290 -2.5389 34 1 1.4091 2.3063 -2.4495 35 1 3.5906 0.5106 1.2952 36 1 3.5540 2.2879 1.2056 37 1 4.3361 0.9885 4.8058 38 1 4.5033 0.8291 3.0409 39 1 7.7771 2.1149 4.1318 40 1 1.1893 3.6302 4.3296 41 1 -0.2397 3.8712 6.3190 42 1 0.8541 -0.0552 7.5877 43 1 2.2774 -0.3062 5.5957 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932318336.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:41 Heat of formation + Delta-G solvation = -49.563022 kcal Electronic energy + Delta-G solvation = -25100.581789 eV Core-core repulsion = 21446.278690 eV Total energy + Delta-G solvation = -3654.303099 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.62521 -39.97768 -38.19497 -36.37005 -34.92947 -32.67279 -31.52409 -30.85562 -30.44854 -28.80878 -27.05230 -24.62327 -23.29602 -22.52560 -21.99898 -21.33925 -19.47622 -18.69122 -17.40843 -16.84244 -16.60148 -15.94084 -15.85741 -15.29625 -15.01256 -14.65684 -14.37177 -14.16858 -14.05327 -13.67697 -13.27424 -13.12840 -13.05175 -12.65473 -12.49707 -12.28532 -11.93332 -11.87255 -11.56126 -11.49590 -11.12380 -11.04038 -10.97022 -10.85201 -10.79750 -10.52106 -10.26956 -10.19386 -9.87778 -9.29865 -8.83961 -8.78652 -8.63402 -8.49413 -7.68347 -6.26404 -4.33910 1.44959 1.55912 2.74158 3.16987 3.25397 3.27295 3.32430 3.72408 3.93043 4.27445 4.54700 4.99649 5.04269 5.05701 5.08627 5.11543 5.27250 5.45233 5.51295 5.56914 5.59392 5.69391 5.82768 5.85612 5.90686 6.07410 6.10193 6.13294 6.17776 6.22408 6.34900 6.39264 6.43201 6.46928 6.57399 6.70726 6.79136 7.01188 7.04756 7.11246 7.24706 7.55807 7.69103 7.94391 8.14151 8.69865 8.92578 9.34164 10.80529 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.008183 B = 0.006235 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3420.910303 B = 4489.466328 C = 7180.339634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.141 4.141 3 C -0.045 4.045 4 H 0.077 0.923 5 C -0.117 4.117 6 C -0.149 4.149 7 C -0.126 4.126 8 C 0.522 3.478 9 O -0.550 6.550 10 N -0.566 5.566 11 C 0.239 3.761 12 C -0.538 4.538 13 H 0.062 0.938 14 C 0.067 3.933 15 N -0.890 5.890 16 Si 0.896 3.104 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.281 1.281 20 C 0.172 3.828 21 C -0.080 4.080 22 C -0.144 4.144 23 C 0.077 3.923 24 F -0.147 7.147 25 C -0.144 4.144 26 C -0.098 4.098 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.038 0.962 38 H 0.044 0.956 39 H 0.266 0.734 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.133 0.867 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.059 -2.490 -4.100 9.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.064 4.064 4 H 0.095 0.905 5 C -0.154 4.154 6 C -0.206 4.206 7 C -0.165 4.165 8 C 0.312 3.688 9 O -0.429 6.429 10 N -0.294 5.294 11 C 0.121 3.879 12 C -0.576 4.576 13 H 0.080 0.920 14 C -0.136 4.136 15 N -0.528 5.528 16 Si 0.723 3.277 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.207 1.207 20 C 0.080 3.920 21 C -0.100 4.100 22 C -0.163 4.163 23 C 0.058 3.942 24 F -0.126 7.126 25 C -0.164 4.164 26 C -0.118 4.118 27 H 0.112 0.888 28 H 0.103 0.897 29 H 0.117 0.883 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.110 0.890 36 H 0.125 0.875 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.147 0.853 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.481 -2.563 -4.133 9.777 hybrid contribution 0.650 0.934 0.427 1.215 sum -7.831 -1.629 -3.707 8.816 Atomic orbital electron populations 1.23587 0.95908 1.00842 1.00614 1.22677 0.95904 0.97313 1.00059 1.20188 0.96566 0.96490 0.93142 0.90452 1.21535 0.97848 1.02273 0.93783 1.21756 0.99757 1.01834 0.97272 1.21660 0.98170 1.05542 0.91160 1.20681 0.88510 0.75183 0.84459 1.90643 1.14999 1.50514 1.86712 1.46053 1.09185 1.70932 1.03277 1.19576 0.71493 0.98051 0.98806 1.21459 0.92159 0.92696 1.51332 0.91960 1.24919 0.96844 0.97282 0.94591 1.69924 1.04439 1.29719 1.48693 0.86469 0.79198 0.84155 0.77873 1.19613 1.20794 1.20731 1.17608 0.92906 0.92620 0.88830 1.21107 0.95592 0.96829 0.96439 1.20924 1.01724 0.98804 0.94887 1.17617 0.95007 0.96131 0.85431 1.91449 1.72848 1.96341 1.51990 1.20878 0.99044 0.97093 0.99339 1.21083 0.98245 0.98553 0.93874 0.88839 0.89679 0.88337 0.91577 0.91854 0.93190 0.92635 0.92994 0.89033 0.87457 0.94433 0.93798 0.92466 0.85251 0.85017 0.84947 0.85043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 13.22 29.01 0.38 -2.08 16 2 C -0.14 -2.03 6.76 -36.03 -0.24 -2.28 16 3 C -0.05 -0.66 1.82 -91.77 -0.17 -0.82 16 4 H 0.08 1.21 7.60 -51.93 -0.39 0.82 16 5 C -0.12 -1.44 5.39 -26.73 -0.14 -1.59 16 6 C -0.15 -1.62 9.73 37.16 0.36 -1.26 16 7 C -0.13 -2.12 3.83 -27.89 -0.11 -2.23 16 8 C 0.52 10.18 7.28 -10.99 -0.08 10.10 16 9 O -0.55 -11.45 13.93 5.55 0.08 -11.37 16 10 N -0.57 -11.51 2.51 -114.72 -0.29 -11.80 16 11 C 0.24 5.40 4.88 -5.19 -0.03 5.38 16 12 C -0.54 -13.34 9.16 -34.44 -0.32 -13.65 16 13 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 14 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -23.65 13.29 55.43 0.74 -22.91 16 16 Si 0.90 19.94 29.54 -169.99 -5.02 14.92 16 17 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 C 0.17 3.33 4.75 -83.66 -0.40 2.93 16 21 C -0.08 -1.45 9.56 -39.40 -0.38 -1.83 16 22 C -0.14 -2.31 10.02 -39.53 -0.40 -2.70 16 23 C 0.08 1.23 7.30 -39.40 -0.29 0.95 16 24 F -0.15 -2.28 17.26 2.25 0.04 -2.24 16 25 C -0.14 -2.23 10.02 -39.54 -0.40 -2.62 16 26 C -0.10 -1.69 9.69 -39.40 -0.38 -2.07 16 27 H 0.09 1.40 7.83 -52.49 -0.41 0.98 16 28 H 0.08 1.09 8.06 -52.49 -0.42 0.67 16 29 H 0.10 1.33 8.06 -52.49 -0.42 0.91 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.60 7.38 -51.93 -0.38 0.22 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.09 1.50 7.26 -51.93 -0.38 1.13 16 36 H 0.11 1.90 7.91 -51.93 -0.41 1.49 16 37 H 0.04 0.91 7.86 -51.93 -0.41 0.50 16 38 H 0.04 1.00 6.47 -51.93 -0.34 0.67 16 39 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 40 H 0.13 2.34 8.06 -52.48 -0.42 1.92 16 41 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 42 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 43 H 0.13 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 366.05 15.07 5.52 5.52 Total: -1.00 -27.23 366.05 -8.10 -35.34 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -6.49 Total: 4.72 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -2.67 Total: -12.18 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.45 Total: -34.71 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.08 Total: -11.37 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -27.23 -8.10 -35.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932318336.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.226 kcal (2) G-P(sol) polarization free energy of solvation -27.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds