Wall clock time and date at job start Tue Mar 31 2020 08:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50703 * 119.99965 * 2 1 4 4 H 1.08998 * 109.46708 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47137 * 239.99855 * 3 2 1 6 6 C 1.53000 * 109.47257 * 64.99907 * 5 3 2 7 7 C 1.52998 * 109.47108 * 119.99620 * 3 2 1 8 8 C 1.50694 * 109.47099 * 295.00124 * 7 3 2 9 9 O 1.21288 * 120.00407 * 359.97438 * 8 7 3 10 10 N 1.34783 * 120.00154 * 180.02562 * 8 7 3 11 11 C 1.46502 * 119.99649 * 355.25976 * 10 8 7 12 12 C 1.50702 * 109.46731 * 90.00499 * 11 10 8 13 13 H 1.07996 * 120.00513 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00112 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99809 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00341 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.46972 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47019 * 119.99394 * 16 14 12 19 19 H 1.48498 * 109.47061 * 239.99691 * 16 14 12 20 20 C 1.40025 * 120.00522 * 175.26709 * 10 8 7 21 21 C 1.38848 * 120.04153 * 291.84976 * 20 10 8 22 22 C 1.38118 * 119.95416 * 179.76643 * 21 20 10 23 23 C 1.38486 * 120.04152 * 0.50747 * 22 21 20 24 24 F 1.35098 * 119.95371 * 179.72413 * 23 22 21 25 25 C 1.38475 * 120.08939 * 359.74498 * 23 22 21 26 26 C 1.38111 * 120.04560 * 359.97438 * 25 23 22 27 27 H 1.07995 * 120.00189 * 0.02562 * 1 2 3 28 28 H 1.07995 * 119.99554 * 179.97438 * 1 2 3 29 29 H 1.07995 * 120.00189 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47300 * 184.99930 * 5 3 2 31 31 H 1.08996 * 109.47155 * 305.00324 * 5 3 2 32 32 H 1.08999 * 109.47242 * 180.02562 * 6 5 3 33 33 H 1.09003 * 109.46985 * 300.00216 * 6 5 3 34 34 H 1.08998 * 109.47419 * 59.99980 * 6 5 3 35 35 H 1.09002 * 109.46958 * 55.00207 * 7 3 2 36 36 H 1.09005 * 109.46864 * 174.99804 * 7 3 2 37 37 H 1.08997 * 109.47317 * 210.00309 * 11 10 8 38 38 H 1.09003 * 109.47555 * 330.00950 * 11 10 8 39 39 H 0.97003 * 119.99490 * 180.02562 * 15 14 12 40 40 H 1.08004 * 120.02600 * 0.02562 * 21 20 10 41 41 H 1.07997 * 119.98062 * 180.23229 * 22 21 20 42 42 H 1.07991 * 119.97398 * 179.97438 * 25 23 22 43 43 H 1.07996 * 120.02125 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9432 1.3862 -1.2492 6 6 2.0566 1.4307 -2.4953 7 6 2.9431 1.3862 1.2493 8 6 2.0697 1.4301 2.4765 9 8 0.8625 1.4000 2.3632 10 7 2.6299 1.5039 3.7002 11 6 4.0863 1.4367 3.8441 12 6 4.6627 2.8273 3.7731 13 1 4.0097 3.6761 3.6342 14 6 6.0240 3.0158 3.8844 15 7 6.8194 1.9821 4.0531 16 14 6.7385 4.7396 3.7971 17 1 5.6408 5.7213 3.6050 18 1 7.4579 5.0418 5.0606 19 1 7.6846 4.8260 2.6559 20 6 1.8201 1.6445 4.8338 21 6 1.1144 2.8220 5.0421 22 6 0.3124 2.9570 6.1584 23 6 0.2200 1.9229 7.0749 24 9 -0.5606 2.0590 8.1691 25 6 0.9272 0.7498 6.8716 26 6 1.7257 0.6087 5.7536 27 1 -0.5400 0.9352 -0.0004 28 1 -0.5399 -0.9353 -0.0004 29 1 1.8500 -0.9352 0.0004 30 1 3.5541 2.2879 -1.2056 31 1 3.5906 0.5105 -1.2951 32 1 2.6832 1.4880 -3.3853 33 1 1.4456 0.5290 -2.5389 34 1 1.4091 2.3063 -2.4495 35 1 3.5906 0.5106 1.2952 36 1 3.5540 2.2879 1.2056 37 1 4.3361 0.9885 4.8058 38 1 4.5033 0.8291 3.0409 39 1 7.7771 2.1149 4.1318 40 1 1.1893 3.6302 4.3296 41 1 -0.2397 3.8712 6.3190 42 1 0.8541 -0.0552 7.5877 43 1 2.2774 -0.3062 5.5957 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932318336.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:40 Heat of formation + Delta-G solvation = -60.067102 kcal Electronic energy + Delta-G solvation = -25101.037280 eV Core-core repulsion = 21446.278690 eV Total energy + Delta-G solvation = -3654.758590 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.88255 -41.46852 -39.54375 -37.59704 -36.56614 -34.54702 -32.57732 -32.16879 -31.77480 -30.23952 -28.79464 -25.84784 -25.02757 -23.94320 -23.29869 -22.44293 -20.71304 -20.08929 -18.77398 -18.64478 -18.08909 -17.55124 -17.28754 -16.55906 -16.37174 -16.20876 -15.74779 -15.44168 -15.34900 -14.79092 -14.55396 -14.49877 -14.37264 -14.23879 -13.87116 -13.73792 -13.46516 -13.19880 -13.00708 -12.83989 -12.79131 -12.63849 -12.16999 -12.14022 -12.10146 -12.00105 -11.71365 -11.60850 -11.32157 -10.82906 -10.58009 -10.14877 -10.10863 -9.88087 -9.20894 -8.21003 -6.34759 0.09019 0.24379 1.40044 1.44169 1.53239 1.58877 1.76094 2.19903 2.41938 2.57999 3.10228 3.24755 3.74182 3.79686 3.89238 3.90135 4.04051 4.23953 4.37915 4.41141 4.44936 4.47623 4.50075 4.56697 4.76416 4.88360 4.92217 4.97300 5.04044 5.08137 5.11311 5.11751 5.13412 5.17855 5.21923 5.42413 5.45312 5.49705 5.64548 5.72065 5.86423 6.03060 6.06156 6.11435 6.49832 6.77589 7.30522 7.40942 8.84802 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.008183 B = 0.006235 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3420.910303 B = 4489.466328 C = 7180.339634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.148 4.148 3 C -0.038 4.038 4 H 0.063 0.937 5 C -0.114 4.114 6 C -0.145 4.145 7 C -0.120 4.120 8 C 0.517 3.483 9 O -0.564 6.564 10 N -0.568 5.568 11 C 0.256 3.744 12 C -0.542 4.542 13 H 0.053 0.947 14 C 0.026 3.974 15 N -0.918 5.918 16 Si 0.952 3.048 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.275 1.275 20 C 0.138 3.862 21 C -0.097 4.097 22 C -0.139 4.139 23 C 0.077 3.923 24 F -0.141 7.141 25 C -0.134 4.134 26 C -0.106 4.106 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.020 0.980 38 H 0.040 0.960 39 H 0.268 0.732 40 H 0.121 0.879 41 H 0.157 0.843 42 H 0.164 0.836 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.471 -2.471 -4.044 9.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.166 4.166 3 C -0.057 4.057 4 H 0.081 0.919 5 C -0.152 4.152 6 C -0.202 4.202 7 C -0.160 4.160 8 C 0.308 3.692 9 O -0.444 6.444 10 N -0.296 5.296 11 C 0.136 3.864 12 C -0.581 4.581 13 H 0.071 0.929 14 C -0.175 4.175 15 N -0.557 5.557 16 Si 0.778 3.222 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.200 1.200 20 C 0.047 3.953 21 C -0.116 4.116 22 C -0.158 4.158 23 C 0.058 3.942 24 F -0.120 7.120 25 C -0.153 4.153 26 C -0.126 4.126 27 H 0.101 0.899 28 H 0.119 0.881 29 H 0.127 0.873 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.038 0.962 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.139 0.861 41 H 0.175 0.825 42 H 0.181 0.819 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.910 -2.541 -4.076 10.122 hybrid contribution 0.696 0.916 0.489 1.251 sum -8.213 -1.625 -3.587 9.108 Atomic orbital electron populations 1.23669 0.95993 1.01118 1.00376 1.22766 0.96056 0.97475 1.00253 1.20136 0.96265 0.96300 0.93041 0.91884 1.21522 0.97772 1.02567 0.93291 1.21720 0.99686 1.01793 0.97015 1.21661 0.98088 1.05073 0.91152 1.21115 0.88648 0.74618 0.84828 1.90620 1.15639 1.51229 1.86875 1.45972 1.08347 1.71084 1.04153 1.19204 0.72931 0.96771 0.97490 1.21621 0.92275 0.93336 1.50840 0.92893 1.25568 0.97202 1.00333 0.94381 1.70003 1.04723 1.31327 1.49635 0.85595 0.78438 0.80347 0.77867 1.19556 1.20778 1.19996 1.17981 0.94033 0.93978 0.89358 1.21128 0.96652 0.96480 0.97368 1.21140 1.00915 0.99870 0.93867 1.17705 0.94854 0.96205 0.85431 1.91470 1.72616 1.96311 1.51592 1.21171 0.97510 0.97731 0.98935 1.21228 0.98831 0.98434 0.94105 0.89878 0.88142 0.87266 0.91668 0.91153 0.91640 0.92565 0.93176 0.88629 0.88536 0.96226 0.94212 0.92284 0.86087 0.82529 0.81858 0.84335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.88 13.22 67.78 0.90 -3.98 16 2 C -0.15 -4.13 6.76 25.64 0.17 -3.96 16 3 C -0.04 -1.12 1.82 -11.54 -0.02 -1.14 16 4 H 0.06 2.00 7.60 -2.39 -0.02 1.99 16 5 C -0.11 -2.71 5.39 30.59 0.16 -2.55 16 6 C -0.14 -2.95 9.73 71.98 0.70 -2.25 16 7 C -0.12 -4.11 3.83 29.85 0.11 -3.99 16 8 C 0.52 20.50 7.28 87.65 0.64 21.14 16 9 O -0.56 -23.74 13.93 -3.05 -0.04 -23.78 16 10 N -0.57 -23.51 2.51 -635.24 -1.59 -25.11 16 11 C 0.26 11.79 4.88 85.63 0.42 12.20 16 12 C -0.54 -27.22 9.16 25.60 0.23 -26.98 16 13 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 14 C 0.03 1.31 5.46 84.65 0.46 1.78 16 15 N -0.92 -48.95 13.29 21.45 0.28 -48.66 16 16 Si 0.95 40.75 29.54 68.60 2.03 42.77 16 17 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 18 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 19 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 20 C 0.14 5.37 4.75 38.13 0.18 5.55 16 21 C -0.10 -3.52 9.56 22.39 0.21 -3.30 16 22 C -0.14 -4.26 10.02 22.30 0.22 -4.04 16 23 C 0.08 2.31 7.30 22.39 0.16 2.47 16 24 F -0.14 -3.99 17.26 44.97 0.78 -3.21 16 25 C -0.13 -3.89 10.02 22.30 0.22 -3.67 16 26 C -0.11 -3.60 9.69 22.39 0.22 -3.39 16 27 H 0.08 2.48 7.83 -2.91 -0.02 2.45 16 28 H 0.10 2.45 8.06 -2.91 -0.02 2.43 16 29 H 0.11 2.82 8.06 -2.91 -0.02 2.79 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.06 1.14 7.38 -2.39 -0.02 1.12 16 34 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.10 3.16 7.26 -2.39 -0.02 3.14 16 36 H 0.10 3.50 7.91 -2.38 -0.02 3.48 16 37 H 0.02 0.97 7.86 -2.39 -0.02 0.95 16 38 H 0.04 1.86 6.47 -2.39 -0.02 1.84 16 39 H 0.27 13.55 8.31 -92.71 -0.77 12.78 16 40 H 0.12 4.50 8.06 -2.91 -0.02 4.47 16 41 H 0.16 3.91 8.06 -2.91 -0.02 3.89 16 42 H 0.16 3.65 8.06 -2.92 -0.02 3.62 16 43 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -57.07 366.05 7.43 -49.64 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.98 Total: 24.47 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: 5.00 Total: -16.11 kcal Atomic # 7 Polarization: -72.46 SS G_CDS: -1.31 Total: -73.77 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.04 Total: -23.78 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.78 Total: -3.21 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.77 kcal Total: -57.07 7.43 -49.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932318336.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.428 kcal (2) G-P(sol) polarization free energy of solvation -57.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds