Wall clock time and date at job start Tue Mar 31 2020 08:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 120.00381 * 2 1 4 4 H 1.09002 * 109.47249 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.47513 * 119.99772 * 3 2 1 6 6 C 1.53001 * 109.47148 * 295.00203 * 5 3 2 7 7 C 1.53004 * 109.46874 * 240.00128 * 3 2 1 8 8 C 1.50701 * 109.47080 * 64.99871 * 7 3 2 9 9 O 1.21284 * 120.00413 * 0.02562 * 8 7 3 10 10 N 1.34773 * 119.99477 * 179.97438 * 8 7 3 11 11 C 1.46502 * 120.00327 * 355.26502 * 10 8 7 12 12 C 1.50701 * 109.47181 * 90.00293 * 11 10 8 13 13 H 1.08000 * 119.99757 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00217 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99789 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00188 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47226 * 89.99354 * 16 14 12 18 18 H 1.48494 * 109.47379 * 209.99789 * 16 14 12 19 19 H 1.48501 * 109.46895 * 329.99437 * 16 14 12 20 20 C 1.40037 * 120.00036 * 175.26860 * 10 8 7 21 21 C 1.38856 * 120.04045 * 291.85419 * 20 10 8 22 22 C 1.38111 * 119.95215 * 179.76848 * 21 20 10 23 23 C 1.38478 * 120.04484 * 0.49973 * 22 21 20 24 24 F 1.35096 * 119.95612 * 179.72312 * 23 22 21 25 25 C 1.38476 * 120.09086 * 359.75155 * 23 22 21 26 26 C 1.38113 * 120.04366 * 359.97438 * 25 23 22 27 27 H 1.07997 * 120.00561 * 180.02562 * 1 2 3 28 28 H 1.08004 * 119.99592 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.99310 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47352 * 174.99576 * 5 3 2 31 31 H 1.09007 * 109.46591 * 54.99889 * 5 3 2 32 32 H 1.08996 * 109.47242 * 179.97438 * 6 5 3 33 33 H 1.09003 * 109.47024 * 59.99924 * 6 5 3 34 34 H 1.08994 * 109.47015 * 299.99601 * 6 5 3 35 35 H 1.09007 * 109.46832 * 184.99892 * 7 3 2 36 36 H 1.08999 * 109.46863 * 304.99301 * 7 3 2 37 37 H 1.09003 * 109.47079 * 209.99994 * 11 10 8 38 38 H 1.09001 * 109.47051 * 330.00170 * 11 10 8 39 39 H 0.97002 * 119.99971 * 180.02562 * 15 14 12 40 40 H 1.08004 * 120.02023 * 0.02562 * 21 20 10 41 41 H 1.07997 * 119.98052 * 180.22775 * 22 21 20 42 42 H 1.07998 * 119.97979 * 179.97438 * 25 23 22 43 43 H 1.08003 * 120.02215 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3553 2.1336 -0.0005 5 6 2.9432 1.3861 1.2492 6 6 2.0565 1.4307 2.4953 7 6 2.9432 1.3859 -1.2493 8 6 2.0698 1.4298 -2.4766 9 8 0.8626 1.3999 -2.3633 10 7 2.6302 1.5035 -3.7001 11 6 4.0822 1.6454 -3.8335 12 6 4.7162 0.2800 -3.9020 13 1 4.0992 -0.6050 -3.8517 14 6 6.0839 0.1605 -4.0289 15 7 6.8351 1.2382 -4.0907 16 14 6.8697 -1.5320 -4.1146 17 1 6.9494 -1.9696 -5.5314 18 1 8.2364 -1.4730 -3.5371 19 1 6.0478 -2.4989 -3.3433 20 6 1.8245 1.4444 -4.8440 21 6 1.1680 0.2655 -5.1716 22 6 0.3700 0.2107 -6.2976 23 6 0.2328 1.3272 -7.1052 24 9 -0.5438 1.2699 -8.2092 25 6 0.8908 2.5022 -6.7830 26 6 1.6852 2.5629 -5.6548 27 1 -0.5401 -0.9352 0.0004 28 1 -0.5400 0.9354 -0.0004 29 1 1.8499 -0.9354 0.0004 30 1 3.5542 2.2877 1.2055 31 1 3.5906 0.5103 1.2951 32 1 2.6831 1.4880 3.3853 33 1 1.4456 0.5290 2.5390 34 1 1.4092 2.3064 2.4494 35 1 3.5542 2.2876 -1.2057 36 1 3.5906 0.5103 -1.2951 37 1 4.3111 2.1984 -4.7445 38 1 4.4751 2.1856 -2.9721 39 1 7.7973 1.1542 -4.1803 40 1 1.2779 -0.6066 -4.5442 41 1 -0.1438 -0.7049 -6.5508 42 1 0.7828 3.3718 -7.4143 43 1 2.1987 3.4794 -5.4041 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932318341.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:44 Heat of formation + Delta-G solvation = -49.501968 kcal Electronic energy + Delta-G solvation = -25143.176348 eV Core-core repulsion = 21488.875897 eV Total energy + Delta-G solvation = -3654.300451 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.62567 -39.97736 -38.19247 -36.36479 -34.92965 -32.67191 -31.50992 -30.85555 -30.44906 -28.80630 -27.05038 -24.62250 -23.29612 -22.52467 -21.99952 -21.33643 -19.43204 -18.70006 -17.40738 -16.85017 -16.59903 -15.93290 -15.85453 -15.29599 -15.01313 -14.65094 -14.40501 -14.08492 -14.07640 -13.70772 -13.27533 -13.11483 -13.06226 -12.63629 -12.46702 -12.29545 -11.94237 -11.87247 -11.58479 -11.46266 -11.11678 -11.05732 -10.94009 -10.84635 -10.80600 -10.52833 -10.25266 -10.20008 -9.90384 -9.29014 -8.80949 -8.74650 -8.62936 -8.53817 -7.68125 -6.26074 -4.33590 1.44952 1.55991 2.76984 3.18334 3.25177 3.26288 3.31909 3.72564 3.93096 4.27571 4.54746 5.00394 5.03711 5.06265 5.08453 5.11519 5.27222 5.46009 5.50828 5.57110 5.62015 5.69125 5.82341 5.90310 5.92573 6.04249 6.10316 6.12113 6.17935 6.23431 6.33419 6.39267 6.39928 6.47106 6.61391 6.71024 6.79243 7.04391 7.04627 7.11171 7.27034 7.55735 7.69233 7.94636 8.14179 8.69798 8.92574 9.34372 10.80832 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.008409 B = 0.006115 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3328.776219 B = 4577.943423 C = 6984.436692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.140 4.140 3 C -0.045 4.045 4 H 0.076 0.924 5 C -0.117 4.117 6 C -0.149 4.149 7 C -0.126 4.126 8 C 0.522 3.478 9 O -0.550 6.550 10 N -0.566 5.566 11 C 0.239 3.761 12 C -0.538 4.538 13 H 0.061 0.939 14 C 0.067 3.933 15 N -0.890 5.890 16 Si 0.896 3.104 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.272 1.272 20 C 0.172 3.828 21 C -0.079 4.079 22 C -0.144 4.144 23 C 0.077 3.923 24 F -0.148 7.148 25 C -0.144 4.144 26 C -0.098 4.098 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.038 0.962 38 H 0.044 0.956 39 H 0.266 0.734 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.133 0.867 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.113 1.143 4.286 9.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.063 4.063 4 H 0.094 0.906 5 C -0.154 4.154 6 C -0.206 4.206 7 C -0.166 4.166 8 C 0.312 3.688 9 O -0.429 6.429 10 N -0.294 5.294 11 C 0.121 3.879 12 C -0.577 4.577 13 H 0.080 0.920 14 C -0.136 4.136 15 N -0.528 5.528 16 Si 0.723 3.277 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.197 1.197 20 C 0.080 3.920 21 C -0.099 4.099 22 C -0.164 4.164 23 C 0.058 3.942 24 F -0.126 7.126 25 C -0.164 4.164 26 C -0.118 4.118 27 H 0.103 0.897 28 H 0.111 0.889 29 H 0.118 0.882 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.111 0.889 36 H 0.125 0.875 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.147 0.853 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.533 1.203 4.330 9.644 hybrid contribution 0.681 -1.021 -0.537 1.339 sum -7.852 0.182 3.793 8.722 Atomic orbital electron populations 1.23576 0.95886 1.00799 1.00837 1.22676 0.95880 0.97382 0.99821 1.20182 0.96513 0.96528 0.93126 0.90596 1.21535 0.97855 1.02244 0.93799 1.21755 0.99753 1.01847 0.97262 1.21667 0.98250 1.05509 0.91159 1.20680 0.88482 0.75149 0.84531 1.90642 1.14968 1.50463 1.86783 1.46058 1.09530 1.71131 1.02727 1.19573 0.71607 0.97887 0.98829 1.21416 0.91990 0.92358 1.51899 0.92041 1.24909 0.97027 0.97051 0.94608 1.69911 1.05731 1.28065 1.49079 0.86524 0.78669 0.83994 0.78515 1.20466 1.20980 1.19714 1.17614 0.93010 0.92489 0.88886 1.21107 0.95705 0.97472 0.95613 1.20921 1.01673 0.97911 0.95847 1.17615 0.95306 0.95657 0.85597 1.91448 1.73020 1.97091 1.51070 1.20879 0.99449 0.97175 0.98866 1.21084 0.98063 0.98170 0.94460 0.89672 0.88902 0.88194 0.91767 0.91690 0.93191 0.92582 0.93036 0.88941 0.87526 0.94422 0.93790 0.92413 0.85270 0.85030 0.84938 0.85017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.54 13.22 29.01 0.38 -2.16 16 2 C -0.14 -2.07 6.76 -36.03 -0.24 -2.32 16 3 C -0.04 -0.65 1.82 -91.77 -0.17 -0.82 16 4 H 0.08 1.17 7.60 -51.93 -0.39 0.77 16 5 C -0.12 -1.44 5.39 -26.73 -0.14 -1.58 16 6 C -0.15 -1.61 9.73 37.16 0.36 -1.25 16 7 C -0.13 -2.13 3.83 -27.88 -0.11 -2.24 16 8 C 0.52 10.18 7.28 -10.99 -0.08 10.10 16 9 O -0.55 -11.45 13.93 5.55 0.08 -11.37 16 10 N -0.57 -11.51 2.51 -114.71 -0.29 -11.80 16 11 C 0.24 5.40 4.88 -5.19 -0.03 5.38 16 12 C -0.54 -13.36 9.16 -34.44 -0.32 -13.68 16 13 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 14 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -23.65 13.29 55.43 0.74 -22.92 16 16 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 20 C 0.17 3.32 4.75 -83.65 -0.40 2.93 16 21 C -0.08 -1.45 9.56 -39.40 -0.38 -1.82 16 22 C -0.14 -2.31 10.02 -39.54 -0.40 -2.71 16 23 C 0.08 1.24 7.30 -39.41 -0.29 0.95 16 24 F -0.15 -2.28 17.26 2.25 0.04 -2.24 16 25 C -0.14 -2.22 10.02 -39.54 -0.40 -2.62 16 26 C -0.10 -1.68 9.69 -39.40 -0.38 -2.07 16 27 H 0.08 1.13 8.06 -52.49 -0.42 0.71 16 28 H 0.09 1.39 7.83 -52.48 -0.41 0.98 16 29 H 0.10 1.45 8.06 -52.49 -0.42 1.03 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.62 7.38 -51.93 -0.38 0.23 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 1.49 7.26 -51.93 -0.38 1.12 16 36 H 0.11 1.92 7.92 -51.93 -0.41 1.51 16 37 H 0.04 0.91 7.86 -51.93 -0.41 0.50 16 38 H 0.04 1.00 6.47 -51.93 -0.34 0.66 16 39 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 40 H 0.13 2.36 8.06 -52.48 -0.42 1.94 16 41 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 42 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 43 H 0.13 2.09 8.06 -52.48 -0.42 1.67 16 LS Contribution 366.05 15.07 5.52 5.52 Total: -1.00 -27.22 366.05 -8.10 -35.32 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -6.49 Total: 4.80 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -2.67 Total: -12.29 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.45 Total: -34.71 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.08 Total: -11.37 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -27.22 -8.10 -35.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932318341.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.180 kcal (2) G-P(sol) polarization free energy of solvation -27.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds