Wall clock time and date at job start Tue Mar 31 2020 08:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 120.00381 * 2 1 4 4 H 1.09002 * 109.47249 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.47513 * 119.99772 * 3 2 1 6 6 C 1.53001 * 109.47148 * 295.00203 * 5 3 2 7 7 C 1.53004 * 109.46874 * 240.00128 * 3 2 1 8 8 C 1.50701 * 109.47080 * 64.99871 * 7 3 2 9 9 O 1.21284 * 120.00413 * 0.02562 * 8 7 3 10 10 N 1.34773 * 119.99477 * 179.97438 * 8 7 3 11 11 C 1.46502 * 120.00327 * 355.26502 * 10 8 7 12 12 C 1.50701 * 109.47181 * 90.00293 * 11 10 8 13 13 H 1.08000 * 119.99757 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00217 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99789 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00188 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47226 * 89.99354 * 16 14 12 18 18 H 1.48494 * 109.47379 * 209.99789 * 16 14 12 19 19 H 1.48501 * 109.46895 * 329.99437 * 16 14 12 20 20 C 1.40037 * 120.00036 * 175.26860 * 10 8 7 21 21 C 1.38856 * 120.04045 * 291.85419 * 20 10 8 22 22 C 1.38111 * 119.95215 * 179.76848 * 21 20 10 23 23 C 1.38478 * 120.04484 * 0.49973 * 22 21 20 24 24 F 1.35096 * 119.95612 * 179.72312 * 23 22 21 25 25 C 1.38476 * 120.09086 * 359.75155 * 23 22 21 26 26 C 1.38113 * 120.04366 * 359.97438 * 25 23 22 27 27 H 1.07997 * 120.00561 * 180.02562 * 1 2 3 28 28 H 1.08004 * 119.99592 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.99310 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47352 * 174.99576 * 5 3 2 31 31 H 1.09007 * 109.46591 * 54.99889 * 5 3 2 32 32 H 1.08996 * 109.47242 * 179.97438 * 6 5 3 33 33 H 1.09003 * 109.47024 * 59.99924 * 6 5 3 34 34 H 1.08994 * 109.47015 * 299.99601 * 6 5 3 35 35 H 1.09007 * 109.46832 * 184.99892 * 7 3 2 36 36 H 1.08999 * 109.46863 * 304.99301 * 7 3 2 37 37 H 1.09003 * 109.47079 * 209.99994 * 11 10 8 38 38 H 1.09001 * 109.47051 * 330.00170 * 11 10 8 39 39 H 0.97002 * 119.99971 * 180.02562 * 15 14 12 40 40 H 1.08004 * 120.02023 * 0.02562 * 21 20 10 41 41 H 1.07997 * 119.98052 * 180.22775 * 22 21 20 42 42 H 1.07998 * 119.97979 * 179.97438 * 25 23 22 43 43 H 1.08003 * 120.02215 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3553 2.1336 -0.0005 5 6 2.9432 1.3861 1.2492 6 6 2.0565 1.4307 2.4953 7 6 2.9432 1.3859 -1.2493 8 6 2.0698 1.4298 -2.4766 9 8 0.8626 1.3999 -2.3633 10 7 2.6302 1.5035 -3.7001 11 6 4.0822 1.6454 -3.8335 12 6 4.7162 0.2800 -3.9020 13 1 4.0992 -0.6050 -3.8517 14 6 6.0839 0.1605 -4.0289 15 7 6.8351 1.2382 -4.0907 16 14 6.8697 -1.5320 -4.1146 17 1 6.9494 -1.9696 -5.5314 18 1 8.2364 -1.4730 -3.5371 19 1 6.0478 -2.4989 -3.3433 20 6 1.8245 1.4444 -4.8440 21 6 1.1680 0.2655 -5.1716 22 6 0.3700 0.2107 -6.2976 23 6 0.2328 1.3272 -7.1052 24 9 -0.5438 1.2699 -8.2092 25 6 0.8908 2.5022 -6.7830 26 6 1.6852 2.5629 -5.6548 27 1 -0.5401 -0.9352 0.0004 28 1 -0.5400 0.9354 -0.0004 29 1 1.8499 -0.9354 0.0004 30 1 3.5542 2.2877 1.2055 31 1 3.5906 0.5103 1.2951 32 1 2.6831 1.4880 3.3853 33 1 1.4456 0.5290 2.5390 34 1 1.4092 2.3064 2.4494 35 1 3.5542 2.2876 -1.2057 36 1 3.5906 0.5103 -1.2951 37 1 4.3111 2.1984 -4.7445 38 1 4.4751 2.1856 -2.9721 39 1 7.7973 1.1542 -4.1803 40 1 1.2779 -0.6066 -4.5442 41 1 -0.1438 -0.7049 -6.5508 42 1 0.7828 3.3718 -7.4143 43 1 2.1987 3.4794 -5.4041 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932318341.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:43 Heat of formation + Delta-G solvation = -59.974436 kcal Electronic energy + Delta-G solvation = -25143.630468 eV Core-core repulsion = 21488.875897 eV Total energy + Delta-G solvation = -3654.754571 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.88271 -41.46698 -39.54172 -37.59581 -36.56468 -34.54613 -32.58152 -32.16810 -31.77496 -30.23731 -28.79169 -25.84532 -25.02705 -23.94169 -23.29663 -22.44815 -20.68824 -20.09954 -18.77777 -18.64749 -18.08576 -17.54507 -17.28577 -16.55907 -16.37357 -16.21313 -15.77363 -15.40383 -15.35608 -14.79356 -14.55266 -14.47014 -14.42662 -14.22686 -13.80746 -13.77419 -13.46147 -13.20181 -13.02680 -12.84309 -12.80087 -12.59414 -12.17163 -12.13535 -12.10593 -12.00081 -11.73062 -11.61358 -11.32837 -10.83503 -10.56911 -10.10918 -10.05749 -9.96893 -9.20341 -8.20745 -6.34430 0.09105 0.24543 1.40788 1.43805 1.51832 1.58500 1.75774 2.20204 2.41894 2.58152 3.10437 3.24873 3.74505 3.79344 3.89547 3.90532 4.03447 4.24118 4.38113 4.40792 4.44693 4.47381 4.48650 4.65498 4.76583 4.81627 4.89386 4.98843 5.05712 5.08271 5.10706 5.12985 5.13968 5.17442 5.21906 5.43124 5.44947 5.50562 5.64636 5.72037 5.86858 6.03249 6.06339 6.10037 6.49962 6.77514 7.30657 7.41093 8.84843 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.008409 B = 0.006115 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3328.776219 B = 4577.943423 C = 6984.436692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.149 4.149 3 C -0.038 4.038 4 H 0.068 0.932 5 C -0.114 4.114 6 C -0.145 4.145 7 C -0.121 4.121 8 C 0.517 3.483 9 O -0.564 6.564 10 N -0.568 5.568 11 C 0.255 3.745 12 C -0.542 4.542 13 H 0.052 0.948 14 C 0.026 3.974 15 N -0.917 5.917 16 Si 0.951 3.049 17 H -0.279 1.279 18 H -0.279 1.279 19 H -0.269 1.269 20 C 0.137 3.863 21 C -0.096 4.096 22 C -0.139 4.139 23 C 0.077 3.923 24 F -0.141 7.141 25 C -0.134 4.134 26 C -0.107 4.107 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.020 0.980 38 H 0.040 0.960 39 H 0.268 0.732 40 H 0.120 0.880 41 H 0.157 0.843 42 H 0.164 0.836 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.578 0.806 4.198 9.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.167 4.167 3 C -0.056 4.056 4 H 0.086 0.914 5 C -0.151 4.151 6 C -0.202 4.202 7 C -0.160 4.160 8 C 0.308 3.692 9 O -0.443 6.443 10 N -0.296 5.296 11 C 0.136 3.864 12 C -0.581 4.581 13 H 0.071 0.929 14 C -0.174 4.174 15 N -0.556 5.556 16 Si 0.776 3.224 17 H -0.205 1.205 18 H -0.204 1.204 19 H -0.193 1.193 20 C 0.046 3.954 21 C -0.115 4.115 22 C -0.158 4.158 23 C 0.058 3.942 24 F -0.120 7.120 25 C -0.154 4.154 26 C -0.126 4.126 27 H 0.116 0.884 28 H 0.105 0.895 29 H 0.120 0.880 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.038 0.962 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.138 0.862 41 H 0.174 0.826 42 H 0.182 0.818 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.015 0.864 4.240 10.000 hybrid contribution 0.742 -0.893 -0.588 1.302 sum -8.273 -0.030 3.651 9.043 Atomic orbital electron populations 1.23659 0.95869 1.01153 1.00370 1.22761 0.96126 0.97552 1.00263 1.20140 0.96282 0.96193 0.93035 0.91378 1.21524 0.97760 1.02568 0.93290 1.21719 0.99692 1.01805 0.96995 1.21672 0.98126 1.05080 0.91165 1.21112 0.88620 0.74581 0.84900 1.90618 1.15603 1.51177 1.86948 1.45976 1.08695 1.71282 1.03600 1.19206 0.73017 0.96560 0.97619 1.21583 0.92168 0.92934 1.51389 0.92948 1.25553 0.97515 0.99952 0.94417 1.69990 1.05976 1.29660 1.50021 0.85661 0.77978 0.80434 0.78294 1.20530 1.20450 1.19326 1.17986 0.94158 0.93842 0.89387 1.21118 0.96820 0.96988 0.96613 1.21134 1.00803 0.99091 0.94799 1.17704 0.95139 0.95755 0.85598 1.91469 1.72788 1.97066 1.50672 1.21176 0.97882 0.98096 0.98198 1.21235 0.98614 0.97939 0.94819 0.88374 0.89515 0.87964 0.91178 0.91642 0.91644 0.92841 0.92861 0.88441 0.88705 0.96193 0.94171 0.92283 0.86165 0.82571 0.81837 0.84258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.97 13.22 67.78 0.90 -4.08 16 2 C -0.15 -4.37 6.76 25.64 0.17 -4.20 16 3 C -0.04 -1.09 1.82 -11.54 -0.02 -1.11 16 4 H 0.07 2.08 7.60 -2.39 -0.02 2.06 16 5 C -0.11 -2.69 5.39 30.59 0.16 -2.53 16 6 C -0.14 -2.92 9.73 71.98 0.70 -2.22 16 7 C -0.12 -4.13 3.83 29.85 0.11 -4.01 16 8 C 0.52 20.47 7.28 87.66 0.64 21.11 16 9 O -0.56 -23.68 13.93 -3.04 -0.04 -23.72 16 10 N -0.57 -23.48 2.51 -635.23 -1.59 -25.07 16 11 C 0.26 11.77 4.88 85.63 0.42 12.18 16 12 C -0.54 -27.22 9.16 25.60 0.23 -26.98 16 13 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 14 C 0.03 1.34 5.46 84.65 0.46 1.80 16 15 N -0.92 -48.93 13.29 21.44 0.28 -48.64 16 16 Si 0.95 40.78 29.54 68.60 2.03 42.81 16 17 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 18 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 20 C 0.14 5.35 4.75 38.12 0.18 5.53 16 21 C -0.10 -3.49 9.56 22.39 0.21 -3.27 16 22 C -0.14 -4.28 10.02 22.30 0.22 -4.05 16 23 C 0.08 2.31 7.30 22.38 0.16 2.47 16 24 F -0.14 -3.99 17.26 44.97 0.78 -3.22 16 25 C -0.13 -3.88 10.02 22.30 0.22 -3.66 16 26 C -0.11 -3.60 9.69 22.39 0.22 -3.38 16 27 H 0.10 2.51 8.06 -2.91 -0.02 2.48 16 28 H 0.09 2.58 7.83 -2.91 -0.02 2.56 16 29 H 0.10 2.93 8.06 -2.91 -0.02 2.91 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.05 1.10 7.38 -2.39 -0.02 1.08 16 34 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.10 3.19 7.26 -2.38 -0.02 3.17 16 36 H 0.09 3.47 7.92 -2.39 -0.02 3.45 16 37 H 0.02 0.99 7.86 -2.39 -0.02 0.97 16 38 H 0.04 1.87 6.47 -2.39 -0.02 1.85 16 39 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 40 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 41 H 0.16 3.91 8.06 -2.91 -0.02 3.89 16 42 H 0.16 3.64 8.06 -2.91 -0.02 3.61 16 43 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -56.93 366.05 7.43 -49.50 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 0.98 Total: 24.74 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: 5.00 Total: -16.40 kcal Atomic # 7 Polarization: -72.40 SS G_CDS: -1.31 Total: -73.71 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.04 Total: -23.72 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.78 Total: -3.22 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -56.93 7.43 -49.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932318341.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.479 kcal (2) G-P(sol) polarization free energy of solvation -56.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds